FFCP PHASE1:Hg19::chr2:228680226..228680243,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6364 | |EntrezGene=6364 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10619 | |HGNC=10619 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=141bp_to_ENST00000473642_5end | |association_with_transcript=141bp_to_ENST00000473642_5end | ||
|cluster_id=chr2:228680226..228680243,+ | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_4_at_CCL20_5end | |description=CAGE_peak_4_at_CCL20_5end | ||
|id=chr2:228680226..228680243,+ | |id=chr2:228680226..228680243,+ | ||
|ontology_enrichment_celltype=CL:0002057!4.09e-14!42;CL:0000860!8.96e-13!45;CL:0002194!3.53e-08!63;CL:0000576!3.53e-08!63;CL:0000040!3.53e-08!63;CL:0000559!3.53e-08!63;CL:0002009!9.20e-08!65;CL:0000188!6.12e-07!9;CL:0000839!7.76e-07!70 | |ontology_enrichment_celltype=CL:0002057!4.09e-14!42;CL:0000860!8.96e-13!45;CL:0002194!3.53e-08!63;CL:0000576!3.53e-08!63;CL:0000040!3.53e-08!63;CL:0000559!3.53e-08!63;CL:0002009!9.20e-08!65;CL:0000188!6.12e-07!9;CL:0000839!7.76e-07!70 | ||
|ontology_enrichment_celltype_v019=CL:0000860;7.53e-45;33!CL:0002057;7.53e-45;33!CL:0000473;4.01e-32;39!CL:0000234;4.01e-32;39!CL:0000576;4.46e-18;48!CL:0000766;6.68e-14;69!CL:0002087;8.60e-10;104!CL:0000763;4.70e-09;100!CL:0002540;1.42e-08;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,6.74e-39,42;CL:0002057,6.74e-39,42;CL:0000473,7.38e-34,48;CL:0000234,7.38e-34,48;CL:0002194,8.54e-27,59;CL:0000576,8.54e-27,59;CL:0000040,8.54e-27,59;CL:0000559,8.54e-27,59;CL:0002009,6.98e-26,61;CL:0000839,7.71e-24,66;CL:0000557,1.82e-23,67;CL:0000766,9.35e-22,72;CL:0000763,4.73e-14,108;CL:0000049,4.73e-14,108;CL:0002087,4.17e-13,115;CL:0002031,1.69e-12,120;CL:0000738,7.60e-11,136;CL:0002032,6.51e-09,161;CL:0000837,6.51e-09,161;CL:0002540,1.31e-08,6;CL:0000037,1.79e-08,168;CL:0000988,5.86e-08,177 | |||
|ontology_enrichment_development_v019=CL:0002057;7.65e-26;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:4468;4.98e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:4468,4.69e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0002405!2.57e-11!115;UBERON:0002204!2.56e-07!167;UBERON:0002371!6.67e-07!80;UBERON:0002193!9.05e-07!112 | |ontology_enrichment_uberon=UBERON:0002405!2.57e-11!115;UBERON:0002204!2.56e-07!167;UBERON:0002371!6.67e-07!80;UBERON:0002193!9.05e-07!112 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,3.77e-28,76;UBERON:0004765,3.82e-27,90;UBERON:0001474,5.43e-26,82;UBERON:0001434,2.80e-24,100;UBERON:0002405,9.53e-23,93;UBERON:0002390,1.65e-21,98;UBERON:0003061,1.65e-21,98;UBERON:0002193,2.25e-19,108;UBERON:0002204,7.63e-14,167;UBERON:0003081,1.78e-09,203 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0,0.37129905888014,0.994192127183747,0,0.602694528023977,0,0,0,0,0,0,0,0,0,0,0.0787107813136792,0,0,0,0,0,0,0,0,0,0,0,0.434021741431704,0,0,0,0,0,0,0,0.822335776043652,0.619412741790207,0,0.512321413058201,0.236482229888585,6.55016793399575,9.03678557017357,6.77132432971709,0,0,0.224723484445085,7.34601341690166,6.41858054152187,10.2293940127847,0,0,0,7.54544020434318,13.0498601678962,5.60540024096017,0.251248665256743,0,0.217188844705117,3.63239701580021,10.3117738076518,8.22802207346299,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.294605907474837,0.221533894583621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.12786256184353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.760272105718513,0,0,0,0,0,0.112611480483322,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163461903113459,0,0.576175924479999,0,0,0,0.149448680551801,0.23486899728753,0,0.140450806702248,0,0.122834317311768,0,0,0,0.910161361938026,0.718618141816238,0,0,0,0,0,0,0.226864366320042,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.464367928031979,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0,0,0,0,0.514703430895577,0,0,0,0,0,0,0,0,0.117408694235822,0.288732895522148,0.462985512576611,0.380508304469197,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0.112131084345361,0,0.07333828582095,0,0,0,0,0,0,1.41849132023278,0,0.428933980974443,0,0,0,0.355391948742546,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.36807447515742,0.500170521059677,1.08506009479894,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426910231213777,0,0,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0.116210378459959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223874754722178,0,0,0,0,0.650756789328606,0,0,0,0,0,0,0,0.462145851343933,0.307007349452259,0.413509717453592,0.859361958946189,0.290033387828457,0.340906509664404,0,0,0.768760269460425,0.382838137483752,0.4046311234222,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179872457583315,0,0.589062011728432,0,0,0,0,0.487426979262569,0,0,0,0,0,0,0.876901770507525,0,0,0,0,0,0.143411352204052,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.71623345421307,0,0.614321404198464,0,0,0,0.494411622680279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113942055847001,0,0,0,0.31900115973192,0,0,0,0,0,0,0,0,0,0,1.47698645169619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.661983911750998,0.627865836814451,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0,0.19871461170299,0,0,0,0,0,0,0,0,0.14405479798815,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0787831823072236,0.164831716762333,0.202210631562555,0,0.0846733320657845,0,0,0,0,0,0,0,0,0,0,0,0,1.25501137532991,0,0,0,0.76280561296425,0,0,0,0,0,0,0,0,0,0,0,0.513260513652988,0,0.213574825135389,0.628817220398664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.77962244319307,0,0.151230923763239,0.15543720058278,0,0,0.449803112163605,0,0,0.265841714557995,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192914038270915,0,0,0,0,0,0,0,0,0,0.491545817507439,0,0,0.106691729694141,0,0,0,0,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.20170506870352,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.342976018874837,0,0,0.118193840883968,0,0,0,0,0,0,0,0,0,0,0,0,0.414432328326074,0,0,0,0,0,0,0,0,0,0,0,0.121917924982269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0717222053926763,0,0.0814032686109745,0.213454691755431,0,0,0,0,0,0,0,0 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| ||
|short_description=p4@CCL20 | |short_description=p4@CCL20 | ||
}} | }} |
Latest revision as of 04:17, 25 September 2015
Short description: | p4@CCL20 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_CCL20_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | 141bp_to_ENST00000473642_5end |
EntrezGene: | CCL20 |
HGNC: | 10619 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 6.74e-39 | 42 |
CD14-positive, CD16-negative classical monocyte | 6.74e-39 | 42 |
defensive cell | 7.38e-34 | 48 |
phagocyte | 7.38e-34 | 48 |
monopoietic cell | 8.54e-27 | 59 |
monocyte | 8.54e-27 | 59 |
monoblast | 8.54e-27 | 59 |
promonocyte | 8.54e-27 | 59 |
macrophage dendritic cell progenitor | 6.98e-26 | 61 |
myeloid lineage restricted progenitor cell | 7.71e-24 | 66 |
granulocyte monocyte progenitor cell | 1.82e-23 | 67 |
myeloid leukocyte | 9.35e-22 | 72 |
myeloid cell | 4.73e-14 | 108 |
common myeloid progenitor | 4.73e-14 | 108 |
nongranular leukocyte | 4.17e-13 | 115 |
hematopoietic lineage restricted progenitor cell | 1.69e-12 | 120 |
leukocyte | 7.60e-11 | 136 |
hematopoietic oligopotent progenitor cell | 6.51e-09 | 161 |
hematopoietic multipotent progenitor cell | 6.51e-09 | 161 |
mesenchymal stem cell of the bone marrow | 1.31e-08 | 6 |
hematopoietic stem cell | 1.79e-08 | 168 |
hematopoietic cell | 5.86e-08 | 177 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 3.77e-28 | 76 |
skeletal element | 3.82e-27 | 90 |
bone element | 5.43e-26 | 82 |
skeletal system | 2.80e-24 | 100 |
immune system | 9.53e-23 | 93 |
hematopoietic system | 1.65e-21 | 98 |
blood island | 1.65e-21 | 98 |
hemolymphoid system | 2.25e-19 | 108 |
musculoskeletal system | 7.63e-14 | 167 |
lateral plate mesoderm | 1.78e-09 | 203 |
Ontology term | p-value | n |
---|---|---|
clear cell adenocarcinoma | 4.69e-07 | 2 |