FFCP PHASE1:Hg19::chr8:95220775..95220820,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1015 | |EntrezGene=1015 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1756 | |HGNC=1756 | ||
|TSSclassifier=strong | |||
|UniProt=Q12864,E7EN24,E5RJT3 | |UniProt=Q12864,E7EN24,E5RJT3 | ||
|association_with_transcript=0bp_to_ENST00000027335,ENST00000441892,ENST00000521491,NM_004063,uc003ygh.2,uc011lgo.1_5end | |association_with_transcript=0bp_to_ENST00000027335,ENST00000441892,ENST00000521491,NM_004063,uc003ygh.2,uc011lgo.1_5end | ||
|cluster_id=chr8:95220775..95220820,- | |||
|coexpression_cluster_id=C25 | |||
|description=CAGE_peak_1_at_CDH17_5end | |description=CAGE_peak_1_at_CDH17_5end | ||
|id=chr8:95220775..95220820,- | |id=chr8:95220775..95220820,- | ||
|ontology_enrichment_celltype=CL:0002563!3.39e-10!4;CL:0002253!1.82e-09!2;CL:0002322!7.55e-08!5 | |ontology_enrichment_celltype=CL:0002563!3.39e-10!4;CL:0002253!1.82e-09!2;CL:0002322!7.55e-08!5 | ||
|ontology_enrichment_celltype_v019=CL:0002563;3.04e-17;4!CL:0002253;1.15e-15;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,3.04e-17,4;CL:0002253,1.15e-15,2;CL:0000223,4.56e-07,58 | |||
|ontology_enrichment_development_v019=UBERON:0001045;9.74e-09;1!UBERON:0006242;1.22e-08;1!UBERON:0003104;6.28e-08;31!UBERON:0006595;7.66e-07;86 | |||
|ontology_enrichment_disease=DOID:3119!2.07e-13!14;DOID:4929!4.51e-09!2;DOID:299!3.56e-07!25 | |||
|ontology_enrichment_disease_v019=DOID:3119;1.17e-08;14!DOID:299;2.90e-07;25 | |||
|ontology_enrichment_disease_v019_2=DOID:3119,1.17e-08,14;DOID:299,2.90e-07,25 | |||
|ontology_enrichment_uberon=UBERON:0005409!8.47e-34!35;UBERON:0000160!6.08e-31!27;UBERON:0000059!4.82e-24!11;UBERON:0004907!2.89e-21!5;UBERON:0001052!2.23e-17!4;UBERON:0001155!6.73e-17!9;UBERON:0004921!2.31e-15!129;UBERON:0004185!2.31e-15!129;UBERON:0001007!5.86e-13!155;UBERON:0001555!5.86e-13!155;UBERON:0007026!5.86e-13!155;UBERON:0004119!2.28e-11!169;UBERON:0000925!2.28e-11!169;UBERON:0006595!2.28e-11!169;UBERON:0001242!3.39e-10!4;UBERON:0001262!3.39e-10!4;UBERON:0004786!3.39e-10!4;UBERON:0004808!3.39e-10!4;UBERON:0001277!3.39e-10!4;UBERON:0001046!6.76e-10!19;UBERON:0002108!1.38e-09!14;UBERON:0003350!3.09e-08!5;UBERON:0000077!7.80e-08!130 | |||
|ontology_enrichment_uberon_v019=UBERON:0005409;3.95e-61;22!UBERON:0000160;3.41e-58;17!UBERON:0000059;1.35e-42;11!UBERON:0004907;8.51e-37;5!UBERON:0004921;5.30e-36;33!UBERON:0001052;8.07e-30;4!UBERON:0001155;1.06e-29;9!UBERON:0001242;3.04e-17;4!UBERON:0001262;3.04e-17;4!UBERON:0004786;3.04e-17;4!UBERON:0004808;3.04e-17;4!UBERON:0001277;3.04e-17;4!UBERON:0002108;1.55e-14;4!UBERON:0001555;2.72e-13;54!UBERON:0001007;1.86e-10;81!UBERON:0000485;4.34e-10;7!UBERON:0003929;4.34e-10;7!UBERON:0003350;6.89e-09;8!UBERON:0001154;9.74e-09;1!UBERON:0001153;9.74e-09;1!UBERON:0009854;9.74e-09;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,3.41e-58,17;UBERON:0005409,7.96e-54,25;UBERON:0000059,1.35e-42,11;UBERON:0004907,8.51e-37,5;UBERON:0001052,8.07e-30,4;UBERON:0001155,1.06e-29,9;UBERON:0004921,4.53e-19,118;UBERON:0001242,3.04e-17,4;UBERON:0001262,3.04e-17,4;UBERON:0004786,3.04e-17,4;UBERON:0004808,3.04e-17,4;UBERON:0001277,3.04e-17,4;UBERON:0001007,1.02e-16,145;UBERON:0001555,1.02e-16,145;UBERON:0007026,1.02e-16,145;UBERON:0004119,8.20e-15,160;UBERON:0000925,8.20e-15,160;UBERON:0006595,8.20e-15,160;UBERON:0002108,1.55e-14,4;UBERON:0001046,1.34e-13,19;UBERON:0011216,1.96e-09,223;UBERON:0003350,6.89e-09,8;UBERON:0001154,9.74e-09,1;UBERON:0001153,9.74e-09,1;UBERON:0001045,9.74e-09,1;UBERON:0000485,5.94e-08,9 | |||
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| ||
|short_description=p1@CDH17 | |short_description=p1@CDH17 | ||
}} | }} |
Latest revision as of 12:46, 19 September 2015
Short description: | p1@CDH17 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CDH17_5end |
Coexpression cluster: | C25_small_colon_temporal_duodenum_liver_Hepatocyte_gall |
Association with transcript: | 0bp_to_ENST00000027335, ENST00000441892, ENST00000521491, NM_004063, uc003ygh.2, uc011lgo.1_5end |
EntrezGene: | CDH17 |
HGNC: | 1756 |
UniProt: | Q12864E7EN24E5RJT3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 3.04e-17 | 4 |
epithelial cell of large intestine | 1.15e-15 | 2 |
endodermal cell | 4.56e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
intestine | 3.41e-58 | 17 |
gastrointestinal system | 7.96e-54 | 25 |
large intestine | 1.35e-42 | 11 |
lower digestive tract | 8.51e-37 | 5 |
rectum | 8.07e-30 | 4 |
colon | 1.06e-29 | 9 |
subdivision of digestive tract | 4.53e-19 | 118 |
intestinal mucosa | 3.04e-17 | 4 |
wall of intestine | 3.04e-17 | 4 |
gastrointestinal system mucosa | 3.04e-17 | 4 |
gastrointestinal system epithelium | 3.04e-17 | 4 |
intestinal epithelium | 3.04e-17 | 4 |
digestive system | 1.02e-16 | 145 |
digestive tract | 1.02e-16 | 145 |
primitive gut | 1.02e-16 | 145 |
endoderm-derived structure | 8.20e-15 | 160 |
endoderm | 8.20e-15 | 160 |
presumptive endoderm | 8.20e-15 | 160 |
small intestine | 1.55e-14 | 4 |
hindgut | 1.34e-13 | 19 |
organ system subdivision | 1.96e-09 | 223 |
epithelium of mucosa | 6.89e-09 | 8 |
vermiform appendix | 9.74e-09 | 1 |
caecum | 9.74e-09 | 1 |
midgut | 9.74e-09 | 1 |
simple columnar epithelium | 5.94e-08 | 9 |
Ontology term | p-value | n |
---|---|---|
gastrointestinal system cancer | 1.17e-08 | 14 |
adenocarcinoma | 2.90e-07 | 25 |