FFCP PHASE1:Hg19::chr2:20402663..20402684,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr2:20402663..20402684,- | |||
|coexpression_cluster_id=C572 | |||
|description=CAGE_peak_at_chr2:20402663..20402684,- | |description=CAGE_peak_at_chr2:20402663..20402684,- | ||
|id=chr2:20402663..20402684,- | |id=chr2:20402663..20402684,- | ||
|ontology_enrichment_celltype=CL:0000223!6.39e-20!59;CL:0000066!1.19e-17!254;CL:0002076!1.85e-16!43;CL:0002321!1.18e-10!248;CL:0002368!3.45e-10!13;CL:0000220!4.15e-10!246 | |ontology_enrichment_celltype=CL:0000223!6.39e-20!59;CL:0000066!1.19e-17!254;CL:0002076!1.85e-16!43;CL:0002321!1.18e-10!248;CL:0002368!3.45e-10!13;CL:0000220!4.15e-10!246 | ||
|ontology_enrichment_celltype_v019=CL:0002368;1.92e-21;13!CL:0002328;1.43e-18;3!CL:0002202;1.68e-16;9!CL:0002632;1.68e-16;9!CL:0002159;2.01e-14;14!CL:0000575;5.94e-13;2!CL:0002076;1.13e-12;42!CL:0002231;5.47e-09;3!CL:0000307;5.47e-09;3!CL:0002623;6.39e-09;3!CL:0002166;2.19e-08;3!CL:0000244;5.14e-07;4!CL:0000731;5.14e-07;4!CL:0002077;6.68e-07;34!CL:0002327;6.89e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002368,1.96e-21,13;CL:0002328,1.23e-18,3;CL:0002076,8.54e-18,42;CL:0000223,9.39e-17,58;CL:0002202,1.77e-16,9;CL:0002632,1.77e-16,9;CL:0002159,1.94e-14,14;CL:0000575,6.32e-13,2;CL:0000066,3.09e-10,253;CL:0002231,5.92e-09,3;CL:0000068,6.40e-09,3;CL:0000069,6.40e-09,3;CL:0000307,6.40e-09,3;CL:0002623,6.40e-09,3;CL:0000377,6.40e-09,3;CL:0002166,2.19e-08,3;CL:0002077,1.91e-07,34;CL:0002321,2.60e-07,250;CL:0000244,4.85e-07,4;CL:0000731,4.85e-07,4;CL:0002327,6.70e-07,4 | |||
|ontology_enrichment_development_v019=CL:0000223;8.11e-10;58!CL:0000377;5.47e-09;3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004119!3.01e-18!169;UBERON:0000925!3.01e-18!169;UBERON:0006595!3.01e-18!169;UBERON:0001007!1.13e-13!155;UBERON:0001555!1.13e-13!155;UBERON:0007026!1.13e-13!155;UBERON:0000161!2.91e-13!35;UBERON:0000077!2.42e-12!130;UBERON:0003102!6.67e-12!95;UBERON:0004921!1.19e-10!129;UBERON:0004185!1.19e-10!129;UBERON:0001004!3.36e-10!72;UBERON:0005911!1.17e-09!82;UBERON:0000166!1.43e-08!21;UBERON:0000165!2.70e-08!28;UBERON:0000930!2.70e-08!28;UBERON:0001041!7.48e-08!98;UBERON:0000475!9.42e-08!365;UBERON:0000466!3.14e-07!126;UBERON:0005153!4.35e-07!37;UBERON:0003104!5.53e-07!238;UBERON:0009142!5.53e-07!238 | |||
|ontology_enrichment_uberon_v019=UBERON:0004815;1.43e-18;3!UBERON:0002031;1.43e-18;3!UBERON:0002185;2.38e-11;5!UBERON:0007196;8.40e-10;15!UBERON:0001558;8.40e-10;15!UBERON:0001723;2.19e-08;3!UBERON:0001033;2.19e-08;3!UBERON:0002365;2.23e-08;31!UBERON:0002330;2.23e-08;31!UBERON:0000485;3.11e-08;7!UBERON:0005795;6.68e-07;1!UBERON:0001911;6.89e-07;4!UBERON:0000964;6.89e-07;4!UBERON:0010409;6.89e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004815,1.23e-18,3;UBERON:0002031,1.23e-18,3;UBERON:0002185,2.18e-11,5;UBERON:0004119,3.91e-10,160;UBERON:0000925,3.91e-10,160;UBERON:0006595,3.91e-10,160;UBERON:0007196,8.65e-10,15;UBERON:0001558,8.65e-10,15;UBERON:0001004,5.39e-09,74;UBERON:0005157,8.95e-09,47;UBERON:0003102,1.35e-08,99;UBERON:0001723,1.50e-08,3;UBERON:0001033,1.50e-08,3;UBERON:0010056,1.50e-08,3;UBERON:0002365,3.21e-08,31;UBERON:0002330,3.21e-08,31;UBERON:0000065,2.74e-07,54;UBERON:0001041,3.14e-07,87;UBERON:0000161,4.58e-07,36;UBERON:0005153,4.88e-07,37;UBERON:0001911,6.70e-07,4;UBERON:0005333,6.70e-07,4;UBERON:0008425,6.70e-07,4;UBERON:0005311,6.70e-07,4;UBERON:0000964,7.10e-07,4;UBERON:0010409,7.10e-07,4;UBERON:0004348,7.10e-07,4;UBERON:0005427,7.10e-07,4;UBERON:0000033,7.51e-07,56 | |||
|phase1_expression=0,0,0,1.0007329835313,0,0,0,0,0.261185628199839,0,0.697801167972428,0.218441372130172,0.263766978228454,0,0,1.34465029290355,0,0,0,0.246242116153576,0.612002073732759,0.313454721478088,0,0.273748850145768,0,0.0764134057479513,0,0.0787107813136792,0,0,0,4.59710612239464,2.409647350226,2.9580320813343,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0.130979075497713,2.18577172975525,3.70784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.872188104285069,0,0,0,0,0,0,0,0.24666754841716,0,0,0,0,0,0,0,0,0,0.117434498643765,0,0,0,0,0,0,0.247266929278557,0,0,0.168336113954066,0,0,0,0.30648779579902,0,0,0.179389635688862,0,0,0.600182192168805,0,0.257640540045629,0.18611685633159,0.337552664482532,0,0,0,0.161646056818812,0,0,0,0.966304265816484,0.545492241181669,0.573609190778008,0.121973706129595,0.132529768321485,0.232387885739037,0.207322110030741,0,0,0,1.92972281457866,0,0,0,0,0,0,0.330881918197182,0,0.474541238222193,0.269662616320329,0,0,0,0,0,0,1.26755034821831,0.982827216677626,1.18157981336281,0,0.122988438543114,0,1.42675371031213,0,6.63491217916764,0.833296006426766,0,0,0,0,0,0,0,0,0,0.858486162094873,0,0,0,1.87467667973554,0.503946384596579,1.13420077793909,0.985143749731331,2.90633938513962,3.06706143332169,0,0,0,0,0,0,0,0,0,0,0,0,0.112131084345361,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0.542621605391443,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205476322550383,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0.356857977594324,0,0.117141414992713,0,0,0,0,0,0.173767228936166,0,0,0,0,0,0,1.66435439510497,0,0,0,0.280660094433074,0,0,0,0,0.771048469013278,0.355123450626254,0,0.519254429183621,0.464841513839837,0.362578348774867,2.6065841139427,4.32780647998713,0.114814448164607,0,0,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0.254876273045038,0,0.447749509444357,0,0,0,0,0,0.618246069886334,0,0,0.574265537996172,0,0,0.096670718292122,0,0,0,0,0,0.0852266274161009,0.0890320356467374,2.80984356113663,0.960950336825531,0.127612712494584,1.31505115112215,0,0,0,0,0,0.869932992075073,0,0,0.372158369359667,0,0.190630193923825,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136499911407986,0.141405431953713,0,0,0,0,0,0,0,0,0.281695602532241,0,0,0,0.709522128141196,0,0.329294892959902,0,0.349934720244983,0.577332676353072,2.01090682660736,4.3556393944529,0.564862804660675,0,3.36942951335251,4.87773168890343,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121360521749513,0,0.284136146806413,0,0,0,0,0,0,0,0,0.19924798825107,0,0,0,0.123084805461069,0,0.0898683511473268,0.179021174675609,0,0.197286811273867,0,0,0,0,0,0.260427761085233,0,0,0.682760689712998,0,0,0,0,0.173624994933292,0,0,0,0,0,0,0,0.41827123283581,0.0769502585037971,0.113942055847001,0.23056390438806,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0.208843899010911,0,0,0,0,0.19566461893209,0.242780379534093,0,0,0,0,0,0,0,0,0,0,0,0,0.347119476670262,0.0979923974143777,0,0,0.171986032471617,0,0.0730893170861856,0.0821154570532092,0.872901148395775,0,0,0.137041924646751,0,0,0.391102765469606,0.160317640503067,0.85381197895741,0,0,0,0,0,0,0.235694034616795,0.135904206073614,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.472699093843342,0.412079291905832,0.404421263125109,0,0,0,0,0.321506296930038,0.275078873194468,0,0,0,0,0.335434687599266,0.86686278029118,0.157363764404994,0,0.179287339332845,0,0.714695326373367,0,0,1.62899880526114,0.864221491201268,0.979762080328227,0,0,0,0.113312091520126,1.02586563574658,0,0,0,0,0,0.106787412567695,0,0.828478110694391,0,0.197611631897944,0,0,0,0,0,0,0.157054096250234,0,0,0,0,0,0,0,0.124980407962107,0,0,0,0,0.144921028610825,0.149254802886874,0,0,0,0,0,0,0,0,0.147855149989634,0,0,0,0,0,0,0,0,0,1.45478927362048,0,0,0,0.400027764663154,0,0.336749488765919,0,0,0,0,0,0,0,0.179088841081487,0,0.219284049578707,0,0,0,0.256241518587947,0.345430341731199,0,0,0,0,0,0,0,0,0,0,0,0,0,0.419638523158333,1.24415452006595,0,0,0,0.109209638192014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0981477185010256,0.11796972334774,1.28400018965175,0.115525666150338,0,0,0,0,0,0,0,0,0.147856086217045,0,0,0,0,0,0.548257766857182,0,0,0.383287282918786,0,0,0,0,0.975726071789027,0,0,0,0,0.118193840883968,0.222462803784138,0.078493092850514,0,0,0,0,0.47775168788705,0,0.158013611732727,0,0,0,2.69381013411948,3.24365106478505,0,0,0,0,0,0.22910686854405,0.31020638566432,0,0.782988022584546,0,0.365753774946808,0,0,0,0.971421986118279,0,0.198950775161368,0,0,0,0.150962843566674,0.231522474323834,0.437119121007915,0.470317296361523,0.245148321753905,0,0,0,0,0,0,0,0.0999411559249289,0,0,0.0802413666891683,0,0.458729283404541,0,0.315543124386369,0,0,0,0.743990036333503,0.462175628631418,0.432626562123789,0,0,0,0,0,0.0918948995348449,0,0.151557396436479,0,0,0,0,0,0,0,0,0,0,1.95945073107265,1.36893320434112,0.134704106029175,0.0717222053926763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| ||
|short_description=p@chr2:20402663..20402684,- | |short_description=p@chr2:20402663..20402684,- | ||
}} | }} |
Latest revision as of 05:13, 29 July 2015
Short description: | p@chr2:20402663..20402684, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:20402663..20402684, - |
Coexpression cluster: | C572_Urothelial_Prostate_Keratinocyte_Corneal_Mammary_Bronchial_Gingival |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
respiratory epithelial cell | 1.96e-21 | 13 |
bronchial epithelial cell | 1.23e-18 | 3 |
endo-epithelial cell | 8.54e-18 | 42 |
endodermal cell | 9.39e-17 | 58 |
epithelial cell of tracheobronchial tree | 1.77e-16 | 9 |
epithelial cell of lower respiratory tract | 1.77e-16 | 9 |
general ecto-epithelial cell | 1.94e-14 | 14 |
corneal epithelial cell | 6.32e-13 | 2 |
epithelial cell | 3.09e-10 | 253 |
epithelial cell of prostate | 5.92e-09 | 3 |
duct epithelial cell | 6.40e-09 | 3 |
branched duct epithelial cell | 6.40e-09 | 3 |
tracheal epithelial cell | 6.40e-09 | 3 |
acinar cell of salivary gland | 6.40e-09 | 3 |
tracheoblast | 6.40e-09 | 3 |
epithelial cell of Malassez | 2.19e-08 | 3 |
ecto-epithelial cell | 1.91e-07 | 34 |
embryonic cell | 2.60e-07 | 250 |
transitional epithelial cell | 4.85e-07 | 4 |
urothelial cell | 4.85e-07 | 4 |
mammary gland epithelial cell | 6.70e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
lower respiratory tract epithelium | 1.23e-18 | 3 |
epithelium of bronchus | 1.23e-18 | 3 |
bronchus | 2.18e-11 | 5 |
endoderm-derived structure | 3.91e-10 | 160 |
endoderm | 3.91e-10 | 160 |
presumptive endoderm | 3.91e-10 | 160 |
tracheobronchial tree | 8.65e-10 | 15 |
lower respiratory tract | 8.65e-10 | 15 |
respiratory system | 5.39e-09 | 74 |
epithelial fold | 8.95e-09 | 47 |
surface structure | 1.35e-08 | 99 |
tongue | 1.50e-08 | 3 |
gustatory system | 1.50e-08 | 3 |
future tongue | 1.50e-08 | 3 |
exocrine gland | 3.21e-08 | 31 |
exocrine system | 3.21e-08 | 31 |
respiratory tract | 2.74e-07 | 54 |
foregut | 3.14e-07 | 87 |
orifice | 4.58e-07 | 36 |
epithelial bud | 4.88e-07 | 37 |
mammary gland | 6.70e-07 | 4 |
mammary bud | 6.70e-07 | 4 |
mammary ridge | 6.70e-07 | 4 |
mammary placode | 6.70e-07 | 4 |
cornea | 7.10e-07 | 4 |
eye surface | 7.10e-07 | 4 |
optic eminence | 7.10e-07 | 4 |
corneal primordium | 7.10e-07 | 4 |
head | 7.51e-07 | 56 |