FFCP PHASE1:Hg19::chr8:143763347..143763359,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=6199 | |HGNC=6199 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=26bp_to_ENST00000512113_5end | |association_with_transcript=26bp_to_ENST00000512113_5end | ||
|cluster_id=chr8:143763347..143763359,- | |||
|description=CAGE_peak_3_at_JRK_5end | |description=CAGE_peak_3_at_JRK_5end | ||
|id=chr8:143763347..143763359,- | |id=chr8:143763347..143763359,- | ||
|ontology_enrichment_celltype=CL:0000860!1.59e-08!45;CL:0002057!9.26e-07!42 | |ontology_enrichment_celltype=CL:0000860!1.59e-08!45;CL:0002057!9.26e-07!42 | ||
|ontology_enrichment_celltype_v019=CL:0002537;6.02e-10;5!CL:0002564;7.41e-10;3!CL:0002602;1.14e-07;2!CL:0002598;2.57e-07;2!CL:0002600;3.10e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002537,5.00e-10,5;CL:0002564,6.60e-10,3;CL:0002602,1.20e-07,2;CL:0002598,2.92e-07,2;CL:0002600,3.21e-07,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001737!1.59e-08!9;UBERON:0000926!2.02e-07!448;UBERON:0004120!2.02e-07!448;UBERON:0006603!2.02e-07!448;UBERON:0002204!2.22e-07!167;UBERON:0004119!6.26e-07!169;UBERON:0000925!6.26e-07!169;UBERON:0006595!6.26e-07!169;UBERON:0000062!9.01e-07!511 | |||
|ontology_enrichment_uberon_v019=UBERON:0011135;8.00e-16;5!UBERON:0002216;8.00e-16;5!UBERON:0011134;8.00e-16;5!UBERON:0002209;8.00e-16;5!UBERON:0002213;8.00e-16;5!UBERON:0007844;8.00e-16;5!UBERON:0011138;8.00e-16;5!UBERON:0001130;8.00e-16;5!UBERON:0001066;8.00e-16;5!UBERON:0001468;8.00e-16;5!UBERON:0002242;7.41e-10;3!UBERON:0004905;9.45e-10;8!UBERON:0000982;9.45e-10;8!UBERON:0004770;9.45e-10;8!UBERON:0000075;1.19e-08;16!UBERON:0004765;1.33e-08;26!UBERON:0001264;1.10e-07;10!UBERON:0006444;1.14e-07;2!UBERON:0001995;1.14e-07;2!UBERON:0004715;1.14e-07;2!UBERON:0000305;4.16e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0011135,7.48e-16,5;UBERON:0002216,7.48e-16,5;UBERON:0011134,7.48e-16,5;UBERON:0002209,7.48e-16,5;UBERON:0002213,7.48e-16,5;UBERON:0005856,7.48e-16,5;UBERON:0005866,7.48e-16,5;UBERON:0005863,7.48e-16,5;UBERON:0007844,7.48e-16,5;UBERON:0011138,7.48e-16,5;UBERON:0001130,7.48e-16,5;UBERON:0001066,7.48e-16,5;UBERON:0001468,7.48e-16,5;UBERON:0002204,1.33e-10,167;UBERON:0002242,6.60e-10,3;UBERON:0003068,6.60e-10,3;UBERON:0002328,6.60e-10,3;UBERON:0004880,6.60e-10,3;UBERON:0004905,9.07e-10,8;UBERON:0000982,9.07e-10,8;UBERON:0004770,9.07e-10,8;UBERON:0001434,2.65e-09,100;UBERON:0004765,1.11e-08,90;UBERON:0000075,1.11e-08,16;UBERON:0006444,1.20e-07,2;UBERON:0001995,1.20e-07,2;UBERON:0004715,1.20e-07,2;UBERON:0001264,1.33e-07,10;UBERON:0000305,3.66e-07,7 | |||
|phase1_expression=0,0.214100523890983,0,0,0,0,0,0,0,0,0,0,0.263766978228454,4.20805600064159,3.64537113300707,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0,0,0.393364276848904,0,0.619264493264304,0,0,0,0,0,0,0,0,0,0.447830948479849,0.971680998056939,0,0.581592955118259,0.377875943688809,0.485168122375632,1.39457422143411,2.87817521615278,1.23882548358041,0.28769239232215,0.512321413058201,0,1.72372840368309,1.93645405075148,0,0.752969358170419,1.63743690034707,0,0,0.641858054152187,0.639337125799041,0,0,0.426224750532694,0.580418477257168,0,1.86846674698672,0.502497330513487,2.08593167368081,0.217188844705117,0,1.47311054395026,1.89877432464531,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0.860234595106124,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163461903113459,0.302714855289863,0,0.234321431833797,3.1216007683032,0,0.747243402759005,0.117434498643765,0.485618833104395,0.702254033511242,4.89970011011744,2.57952066354713,4.02970546585485,0,0.247266929278557,4.55080680969013,0,0.841680569770331,1.37630371859161,2.49357703935765,0,0,0.150238058906597,0,0,0,0,0,0,0,0,0.506328996723799,0,0,0,0,0,0,1.01736355386293,0,0,0,0,0,0,0,0,0,0,0.643240938192885,0,1.39310378409594,0.721879481669586,0.828147600278907,0.674338760312407,0.723033089650446,1.10293972732394,0.653638332277218,0.474541238222193,0.808987848960987,1.37355025587742,0.38474715694639,0,0,0,0,0,0,0,0,0.245976877086227,0,0,0,0,0,0.651616610620649,2.07986957055916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102827492703324,0.300343057843917,0,0.112131084345361,0,0.22001485746285,0.129271715757778,10.7296933755565,0.845302752556,0.797814349754612,2.08014873822732,6.17297698229141,9.92943924162948,5.32844358032199,0,4.34097284313154,0,0.325736184293735,0,0.791951872933429,0,0,0,0,1.50677127429638,0,0,0,0,0.579125226670317,3.6985738059069,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,1.2269149171914,5.00170521059677,1.89885516589815,0,0,0,0,0,0,0,0,0,1.12948698808508,2.15381273209015,0,0,0,0.106727557803444,0.909382714338778,0,0,0,0,0,0,0,0,0,0.308419387605311,0,0,0,0.116210378459959,0,0,0,0,0,0,0,0,0,0,0,0,0,0.431831832204279,0,0,0,0,0,0,0,0,0,0,0,0.309123034943167,0,0,0,0,0,0,0.770243085573222,0.460511024178389,1.24052915236078,1.39646318328756,1.74020032697074,0.596586391912706,0,0,0,0,0,0,0.31481234683064,0,0,0,0,0,0,0.372158369359667,0.632758849437452,0.571890581771475,5.62975140884935,1.28381696410176,0,0,1.2591072030832,0.274537029736055,0.117812402345686,0,0,0,2.43816869544795,0,0,0,0,0,0,0,0,4.6302042741335,1.31178950409327,0,0,0,0,0,0,0,0.844430541190656,0,0.75894634753143,0.349934720244983,0,0,0,0.376575203107117,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0.735120647943095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425846237690326,0,0,0,0,1.17232857241224,0,0,0,0,0,0,0.586032717087576,0,0.111443384277478,0,1.43246690842614,2.07875276582847,1.84296421259539,0,0,0.445234820091624,0,0,0,0,0,0.306806047506464,0,0,0,0.358042349351218,0,0.0986434056369336,0,6.66821940867821,0,0.185536196323703,0,0,0,0,0,1.27126825146383,0,0,0,0,0,0,0,0,0,0,0.21787692703798,0,0.0769502585037971,0.341826167541004,0,0.0897576444097721,0,0.957003479195758,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.391329237864179,0,0,0,0,0,0,0,3.32326936353593,1.323967823502,4.39506085770115,4.77889719091835,0,0,0,4.01768829398948,0,0,0,0.774050650312681,1.90032224424082,1.06750094169172,0.387956065953678,0,0,0.411125773940253,0,0,0,0,0,0.39961921916426,0,0,0,0,0,0.471388069233591,0,0,0.101998217636322,2.60055530911367,0,0,0,0,0,0.279282401272254,0,0,0,0,0.223171457441873,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0,0,0.211200673038813,0,0,0,0,0,0,0,0,0,0,0,0.339936274560377,0,0,0,0,0.513260513652988,2.11444506695002,0.320362237703084,0,0.828478110694391,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0.1251909307065,0,0,0.0620964029413835,0,0.124980407962107,0,0,0.235265819698172,0,0,0.149254802886874,0.233713309847224,0,0.568209015825267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.181848659202559,0,0,0,0,0,0,0,0.770479321629213,0,0,0,0,0,0,0,0,0.883445729729405,0,0,0,0.345430341731199,0.911579868532147,0.138258436151731,0,0,0,0,0.245772908753719,0.845248493434508,0,0,0,0.567515953566836,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192687675289379,0,0,0.205116364240755,0,0,0,0,0.588886311006154,0,0,0.231051332300676,0,0,0,0,1.21023041222112,0,0,2.29280684514135,0.147856086217045,0.0675375846183947,0,0.413373593002368,0.0634158101939068,0,0,0.496211178389294,0,0,0,0,0,0,1.5966426629275,0,0.857440047187092,0,0.0657727735628491,1.30013224972365,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0.414432328326074,0.85359238546975,0.691259661814092,0,0.709992004383392,0.255640214277473,0,0,0,0,0,0.098150233615243,0,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.432626562123789,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0.213233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| ||
|short_description=p3@JRK | |short_description=p3@JRK | ||
}} | }} |
Latest revision as of 21:12, 16 September 2015
Short description: | p3@JRK |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_JRK_5end |
Coexpression cluster: | NA |
Association with transcript: | 26bp_to_ENST00000512113_5end |
EntrezGene: | NA |
HGNC: | 6199 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
amnion mesenchymal stem cell | 5.00e-10 | 5 |
nucleus pulposus cell of intervertebral disc | 6.60e-10 | 3 |
annulus pulposus cell | 1.20e-07 | 2 |
bronchial smooth muscle cell | 2.92e-07 | 2 |
smooth muscle cell of trachea | 3.21e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
intervertebral cartilage | 7.48e-16 | 5 |
symphysis | 7.48e-16 | 5 |
nonsynovial joint | 7.48e-16 | 5 |
fibrous joint | 7.48e-16 | 5 |
cartilaginous joint | 7.48e-16 | 5 |
developing mesenchymal condensation | 7.48e-16 | 5 |
pre-cartilage condensation | 7.48e-16 | 5 |
cartilaginous condensation | 7.48e-16 | 5 |
cartilage element | 7.48e-16 | 5 |
post-cranial axial skeletal system | 7.48e-16 | 5 |
vertebral column | 7.48e-16 | 5 |
intervertebral disk | 7.48e-16 | 5 |
intervertebral joint | 7.48e-16 | 5 |
musculoskeletal system | 1.33e-10 | 167 |
nucleus pulposus | 6.60e-10 | 3 |
axial mesoderm | 6.60e-10 | 3 |
notochord | 6.60e-10 | 3 |
chordamesoderm | 6.60e-10 | 3 |
articulation | 9.07e-10 | 8 |
skeletal joint | 9.07e-10 | 8 |
articular system | 9.07e-10 | 8 |
skeletal system | 2.65e-09 | 100 |
skeletal element | 1.11e-08 | 90 |
subdivision of skeletal system | 1.11e-08 | 16 |
annulus fibrosus | 1.20e-07 | 2 |
fibrocartilage | 1.20e-07 | 2 |
annulus fibrosus disci intervertebralis | 1.20e-07 | 2 |
pancreas | 1.33e-07 | 10 |
amnion | 3.66e-07 | 7 |