FFCP PHASE1:Hg19::chr20:61287795..61287809,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=28231 | |EntrezGene=28231 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10953 | |HGNC=10953 | ||
|TSSclassifier=strong | |||
|UniProt=C9JMF3 | |UniProt=C9JMF3 | ||
|association_with_transcript=0bp_to_ENST00000342674_5end | |association_with_transcript=0bp_to_ENST00000342674_5end | ||
|cluster_id=chr20:61287795..61287809,+ | |||
|coexpression_cluster_id=C68 | |||
|description=CAGE_peak_4_at_SLCO4A1_5end | |description=CAGE_peak_4_at_SLCO4A1_5end | ||
|id=chr20:61287795..61287809,+ | |id=chr20:61287795..61287809,+ | ||
|ontology_enrichment_celltype=CL:0000349!1.58e-10!3;CL:0002577!1.58e-10!3;CL:0002541!5.94e-10!3;CL:0002536!1.79e-07!2 | |ontology_enrichment_celltype=CL:0000349!1.58e-10!3;CL:0002577!1.58e-10!3;CL:0002541!5.94e-10!3;CL:0002536!1.79e-07!2 | ||
|ontology_enrichment_celltype_v019=CL:0000349;1.70e-93;19!CL:0002577;8.69e-55;3!CL:0002536;1.55e-36;2!CL:0002541;8.42e-25;3!CL:0002537;1.05e-15;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,1.62e-93,19;CL:0002577,8.69e-55,3;CL:0002536,1.42e-36,2;CL:0002541,8.95e-25,3;CL:0002537,1.05e-15,5 | |||
|ontology_enrichment_development_v019=UBERON:0000358;2.97e-19;1 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005631!1.58e-25!14;UBERON:0000158!1.58e-25!14;UBERON:0003124!1.64e-21!7;UBERON:0000478!1.54e-19!24;UBERON:0001987!2.74e-13!4;UBERON:0004340!2.74e-13!4;UBERON:0000476!5.94e-10!3;UBERON:0000920!5.94e-10!3;UBERON:0004923!1.89e-08!57;UBERON:0000305!1.22e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0000478;1.78e-89;24!UBERON:0005631;2.31e-64;10!UBERON:0000158;2.31e-64;10!UBERON:0000305;1.42e-41;7!UBERON:0001987;2.53e-41;4!UBERON:0003124;8.42e-25;3!UBERON:0000920;8.42e-25;3!UBERON:0004923;1.78e-09;55!UBERON:0002331;4.34e-08;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,4.29e-103,14;UBERON:0000158,4.29e-103,14;UBERON:0000478,1.78e-89,24;UBERON:0003124,4.45e-64,7;UBERON:0000305,1.34e-41,7;UBERON:0001987,2.53e-41,4;UBERON:0004340,2.53e-41,4;UBERON:0004871,1.79e-36,8;UBERON:0000920,8.95e-25,3;UBERON:0004923,1.28e-21,66;UBERON:0000995,2.00e-08,21;UBERON:0002331,4.34e-08,10;UBERON:0000358,4.34e-08,10;UBERON:0000307,4.34e-08,10;UBERON:0000091,4.34e-08,10;UBERON:0000087,4.34e-08,10;UBERON:0007010,4.34e-08,10;UBERON:0007806,4.34e-08,10;UBERON:0008780,4.34e-08,10;UBERON:0005728,4.34e-08,10;UBERON:0005795,4.55e-08,22;UBERON:0003975,4.55e-08,22;UBERON:0004175,3.64e-07,25 | |||
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| ||
|short_description=p4@SLCO4A1 | |short_description=p4@SLCO4A1 | ||
}} | }} |
Latest revision as of 11:11, 17 September 2015
Short description: | p4@SLCO4A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_SLCO4A1_5end |
Coexpression cluster: | C68_amniotic_chorionic_Placental_salivary_placenta_tongue_mesothelioma |
Association with transcript: | 0bp_to_ENST00000342674_5end |
EntrezGene: | SLCO4A1 |
HGNC: | 10953 |
UniProt: | C9JMF3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 1.62e-93 | 19 |
placental epithelial cell | 8.69e-55 | 3 |
amniotic epithelial cell | 1.42e-36 | 2 |
chorionic membrane mesenchymal stem cell | 8.95e-25 | 3 |
amnion mesenchymal stem cell | 1.05e-15 | 5 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 4.29e-103 | 14 |
membranous layer | 4.29e-103 | 14 |
extraembryonic structure | 1.78e-89 | 24 |
chorion | 4.45e-64 | 7 |
amnion | 1.34e-41 | 7 |
placenta | 2.53e-41 | 4 |
allantois | 2.53e-41 | 4 |
somatic layer of lateral plate mesoderm | 1.79e-36 | 8 |
egg chorion | 8.95e-25 | 3 |
organ component layer | 1.28e-21 | 66 |
uterus | 2.00e-08 | 21 |
umbilical cord | 4.34e-08 | 10 |
blastocyst | 4.34e-08 | 10 |
blastula | 4.34e-08 | 10 |
bilaminar disc | 4.34e-08 | 10 |
inner cell mass | 4.34e-08 | 10 |
cleaving embryo | 4.34e-08 | 10 |
connecting stalk | 4.34e-08 | 10 |
inner cell mass derived epiblast | 4.34e-08 | 10 |
extraembryonic mesoderm | 4.34e-08 | 10 |
embryonic uterus | 4.55e-08 | 22 |
internal female genitalia | 4.55e-08 | 22 |
internal genitalia | 3.64e-07 | 25 |