FFCP PHASE1:Hg19::chr6:137243373..137243391,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=340146 | |EntrezGene=340146 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15621 | |HGNC=15621 | ||
|TSSclassifier=strong | |||
|UniProt=Q5M8T2 | |UniProt=Q5M8T2 | ||
|association_with_transcript=-10bp_to_ENST00000331858,NM_001008783,uc003qhe.2_5end | |association_with_transcript=-10bp_to_ENST00000331858,NM_001008783,uc003qhe.2_5end | ||
|cluster_id=chr6:137243373..137243391,+ | |||
|coexpression_cluster_id=C184 | |||
|description=CAGE_peak_1_at_SLC35D3_5end | |description=CAGE_peak_1_at_SLC35D3_5end | ||
|id=chr6:137243373..137243391,+ | |id=chr6:137243373..137243391,+ | ||
|ontology_enrichment_celltype=CL:0002322!9.01e-14!5;CL:0000242!4.10e-07!2 | |ontology_enrichment_celltype=CL:0002322!9.01e-14!5;CL:0000242!4.10e-07!2 | ||
|ontology_enrichment_celltype_v019=CL:0000123;4.13e-23;2!CL:0000242;4.13e-23;2!CL:0000167;7.02e-13;1!CL:0000164;7.02e-13;1!CL:0000502;7.02e-13;1!CL:0000172;7.02e-13;1!CL:0000173;7.02e-13;1!CL:0000312;7.94e-10;5!CL:0000240;2.47e-08;6!CL:0000311;2.47e-08;6!CL:0000079;2.47e-08;6!CL:0000237;2.47e-08;6!CL:0002535;9.01e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000242,3.12e-23,2;CL:0000167,7.03e-13,1;CL:0000164,7.03e-13,1;CL:0000502,7.03e-13,1;CL:0000172,7.03e-13,1;CL:0000173,7.03e-13,1;CL:0002351,7.03e-13,1;CL:0000312,7.11e-10,5;CL:0000240,2.25e-08,6;CL:0000311,2.25e-08,6;CL:0000079,2.25e-08,6;CL:0000237,2.25e-08,6;CL:0000036,2.25e-08,6;CL:0000357,2.25e-08,6;CL:0000114,2.25e-08,6;CL:0002535,6.80e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0010122;2.78e-23;2!CL:0002351;7.02e-13;1!UBERON:0006222;1.32e-12;1!CL:0000357;2.47e-08;6!CL:0000114;2.47e-08;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:4430;7.02e-13;1!DOID:4362;6.50e-10;5 | |||
|ontology_enrichment_disease_v019_2=DOID:4430,7.03e-13,1;DOID:4362,5.20e-10,5 | |||
|ontology_enrichment_uberon=UBERON:0002308!2.84e-18!9;UBERON:0000125!2.84e-18!9;UBERON:0009663!3.41e-14!7;UBERON:0000369!4.85e-12!4;UBERON:0002435!4.85e-12!4;UBERON:0000204!4.85e-12!4;UBERON:0010082!4.85e-12!4;UBERON:0005743!3.69e-11!86;UBERON:0002420!7.36e-11!9;UBERON:0007245!7.36e-11!9;UBERON:0010009!7.36e-11!9;UBERON:0010011!7.36e-11!9;UBERON:0000454!7.36e-11!9;UBERON:0000073!1.24e-10!94;UBERON:0001016!1.24e-10!94;UBERON:0005383!2.00e-09!3;UBERON:0005382!2.00e-09!3;UBERON:0001049!5.60e-09!57;UBERON:0005068!5.60e-09!57;UBERON:0006241!5.60e-09!57;UBERON:0007135!5.60e-09!57;UBERON:0007023!9.74e-09!115;UBERON:0001017!1.74e-08!82;UBERON:0003075!3.61e-08!86;UBERON:0007284!3.61e-08!86;UBERON:0000988!1.02e-07!3;UBERON:0002346!1.35e-07!90;UBERON:0002616!2.10e-07!59;UBERON:0001873!4.10e-07!2;UBERON:0010122!4.10e-07!2;UBERON:0002780!8.89e-07!41;UBERON:0001890!8.89e-07!41;UBERON:0006240!8.89e-07!41 | |||
|ontology_enrichment_uberon_v019=UBERON:0000369;1.67e-25;4!UBERON:0002435;1.67e-25;4!UBERON:0000204;1.67e-25;4!UBERON:0009663;1.86e-25;7!UBERON:0001873;2.78e-23;2!UBERON:0002420;7.03e-20;9!UBERON:0000125;7.03e-20;9!UBERON:0007245;7.03e-20;9!UBERON:0002308;7.03e-20;9!UBERON:0010009;7.03e-20;9!UBERON:0010011;7.03e-20;9!UBERON:0000454;7.03e-20;9!UBERON:0005383;7.26e-16;3!UBERON:0005382;7.26e-16;3!UBERON:0001882;2.75e-12;1!UBERON:0005403;2.75e-12;1!UBERON:0000966;7.27e-10;5!UBERON:0005388;7.27e-10;5!UBERON:0001802;7.27e-10;5!UBERON:0000002;2.09e-08;6!UBERON:0001560;2.09e-08;6!UBERON:0001875;9.01e-07;2!UBERON:0006955;9.01e-07;2!UBERON:0004801;9.01e-07;2!UBERON:0006514;9.01e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000369,2.54e-25,4;UBERON:0002435,2.54e-25,4;UBERON:0000204,2.54e-25,4;UBERON:0010082,2.54e-25,4;UBERON:0009663,3.09e-25,7;UBERON:0001873,3.12e-23,2;UBERON:0010122,3.12e-23,2;UBERON:0002420,1.04e-19,9;UBERON:0000125,1.04e-19,9;UBERON:0007245,1.04e-19,9;UBERON:0002308,1.04e-19,9;UBERON:0010009,1.04e-19,9;UBERON:0010011,1.04e-19,9;UBERON:0000454,1.04e-19,9;UBERON:0005383,7.83e-16,3;UBERON:0005382,7.83e-16,3;UBERON:0001882,4.31e-12,1;UBERON:0005403,4.31e-12,1;UBERON:0000002,1.74e-08,6;UBERON:0001560,1.74e-08,6;UBERON:0000966,2.17e-08,6;UBERON:0005388,2.17e-08,6;UBERON:0001802,2.17e-08,6;UBERON:0003056,4.29e-08,61;UBERON:0010371,2.07e-07,104;UBERON:0006955,6.80e-07,2;UBERON:0004801,6.80e-07,2 | |||
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| ||
|short_description=p1@SLC35D3 | |short_description=p1@SLC35D3 | ||
}} | }} |
Latest revision as of 01:30, 25 September 2015
Short description: | p1@SLC35D3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SLC35D3_5end |
Coexpression cluster: | C184_somatostatinoma_smallcell_nonsmall_small_gastrointestinal_pineal_thyroid |
Association with transcript: | -10bp_to_ENST00000331858, NM_001008783, uc003qhe.2_5end |
EntrezGene: | SLC35D3 |
HGNC: | 15621 |
UniProt: | Q5M8T2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Merkel cell | 3.12e-23 | 2 |
peptide hormone secreting cell | 7.03e-13 | 1 |
enteroendocrine cell | 7.03e-13 | 1 |
type D enteroendocrine cell | 7.03e-13 | 1 |
somatostatin secreting cell | 7.03e-13 | 1 |
pancreatic D cell | 7.03e-13 | 1 |
progenitor cell of endocrine pancreas | 7.03e-13 | 1 |
keratinocyte | 7.11e-10 | 5 |
stratified squamous epithelial cell | 2.25e-08 | 6 |
keratin accumulating cell | 2.25e-08 | 6 |
stratified epithelial cell | 2.25e-08 | 6 |
keratinizing barrier epithelial cell | 2.25e-08 | 6 |
epithelial fate stem cell | 2.25e-08 | 6 |
stratified epithelial stem cell | 2.25e-08 | 6 |
surface ectodermal cell | 2.25e-08 | 6 |
epithelial cell of cervix | 6.80e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
corpus striatum | 2.54e-25 | 4 |
striatum | 2.54e-25 | 4 |
ventral part of telencephalon | 2.54e-25 | 4 |
future corpus striatum | 2.54e-25 | 4 |
telencephalic nucleus | 3.09e-25 | 7 |
caudate nucleus | 3.12e-23 | 2 |
future caudate nucleus | 3.12e-23 | 2 |
basal ganglion | 1.04e-19 | 9 |
neural nucleus | 1.04e-19 | 9 |
nuclear complex of neuraxis | 1.04e-19 | 9 |
nucleus of brain | 1.04e-19 | 9 |
aggregate regional part of brain | 1.04e-19 | 9 |
collection of basal ganglia | 1.04e-19 | 9 |
cerebral subcortex | 1.04e-19 | 9 |
caudate-putamen | 7.83e-16 | 3 |
dorsal striatum | 7.83e-16 | 3 |
nucleus accumbens | 4.31e-12 | 1 |
ventral striatum | 4.31e-12 | 1 |
uterine cervix | 1.74e-08 | 6 |
neck of organ | 1.74e-08 | 6 |
retina | 2.17e-08 | 6 |
photoreceptor array | 2.17e-08 | 6 |
posterior segment of eyeball | 2.17e-08 | 6 |
pre-chordal neural plate | 4.29e-08 | 61 |
ecto-epithelium | 2.07e-07 | 104 |
uterine epithelium | 6.80e-07 | 2 |
cervix epithelium | 6.80e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
somatostatinoma | 7.03e-13 | 1 |
cervical cancer | 5.20e-10 | 5 |