FFCP PHASE1:Hg19::chr1:934939..934962,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:934939..934962,- | |||
|description=CAGE_peak_at_chr1:934939..934962,- | |description=CAGE_peak_at_chr1:934939..934962,- | ||
|id=chr1:934939..934962,- | |id=chr1:934939..934962,- | ||
|ontology_enrichment_celltype=CL:0000066!1.08e-27!254;CL:0000223!6.03e-08!59 | |ontology_enrichment_celltype=CL:0000066!1.08e-27!254;CL:0000223!6.03e-08!59 | ||
|ontology_enrichment_celltype_v019=CL:0000167;3.30e-09;1!CL:0000164;3.30e-09;1!CL:0000502;3.30e-09;1!CL:0000172;3.30e-09;1!CL:0000173;3.30e-09;1!CL:1000449;1.74e-08;15!CL:1000497;1.68e-07;17!CL:0002518;1.68e-07;17!CL:0002188;2.46e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000167,2.82e-09,1;CL:0000164,2.82e-09,1;CL:0000502,2.82e-09,1;CL:0000172,2.82e-09,1;CL:0000173,2.82e-09,1;CL:0002351,2.82e-09,1;CL:1000449,1.57e-08,15;CL:1000497,1.54e-07,17;CL:0002518,1.54e-07,17;CL:0002188,2.46e-07,5 | |||
|ontology_enrichment_development_v019=CL:0002351;3.30e-09;1!UBERON:0008425;3.30e-09;1 | |||
|ontology_enrichment_disease=DOID:305!2.93e-24!106;DOID:0050687!1.94e-22!143;DOID:162!1.40e-13!235;DOID:14566!9.48e-13!239 | |ontology_enrichment_disease=DOID:305!2.93e-24!106;DOID:0050687!1.94e-22!143;DOID:162!1.40e-13!235;DOID:14566!9.48e-13!239 | ||
|ontology_enrichment_disease_v019=DOID:5093;8.62e-32;4!DOID:1612;8.62e-32;4!DOID:1799;2.50e-09;1!DOID:10165;2.50e-09;1!DOID:1798;2.50e-09;1!DOID:4430;3.30e-09;1 | |||
|ontology_enrichment_disease_v019_2=DOID:5093,1.14e-31,4;DOID:1612,1.14e-31,4;DOID:0050687,7.77e-11,143;DOID:305,5.64e-10,106;DOID:1799,2.40e-09,1;DOID:10165,2.40e-09,1;DOID:1798,2.40e-09,1;DOID:4430,2.82e-09,1 | |||
|ontology_enrichment_uberon=UBERON:0006554!4.45e-10!44;UBERON:0001008!1.14e-09!45;UBERON:0000058!1.31e-09!26;UBERON:0002113!4.01e-09!27;UBERON:0003918!4.01e-09!27;UBERON:0005095!4.01e-09!27;UBERON:0007687!4.01e-09!27;UBERON:0000489!5.72e-09!32;UBERON:0001737!1.06e-08!9;UBERON:0005177!1.68e-08!107;UBERON:0000080!3.12e-08!18;UBERON:0002120!3.12e-08!18;UBERON:0004875!3.12e-08!18;UBERON:0005721!3.12e-08!18;UBERON:0005754!3.12e-08!18;UBERON:0007297!3.12e-08!18;UBERON:0003064!4.16e-08!37;UBERON:0005172!6.84e-08!55;UBERON:0005173!6.84e-08!55;UBERON:0006555!1.61e-07!17;UBERON:0005103!1.61e-07!17;UBERON:0000083!1.61e-07!17;UBERON:0009201!1.61e-07!17;UBERON:0004819!1.61e-07!17;UBERON:0006553!1.61e-07!17;UBERON:0003074!1.61e-07!17;UBERON:0003060!1.61e-07!17;UBERON:0009569!3.82e-07!113;UBERON:0004876!5.20e-07!20;UBERON:0000466!9.77e-07!126 | |||
|ontology_enrichment_uberon_v019=UBERON:0000310;7.33e-13;10!UBERON:0001443;1.05e-11;11!UBERON:0002113;2.71e-11;24!UBERON:0011143;2.71e-11;24!UBERON:0000489;2.94e-09;29!UBERON:0006554;6.22e-09;30!UBERON:0001008;6.22e-09;30!UBERON:0007195;6.98e-09;1!UBERON:0006555;1.74e-08;15!UBERON:0004819;1.74e-08;15!UBERON:0001285;1.74e-08;15!UBERON:0007684;1.74e-08;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000310,8.17e-13,10;UBERON:0001443,1.15e-11,11;UBERON:0002113,1.98e-10,26;UBERON:0003918,1.98e-10,26;UBERON:0011143,1.98e-10,26;UBERON:0005095,1.98e-10,26;UBERON:0007687,1.98e-10,26;UBERON:0009569,1.95e-09,112;UBERON:0007195,1.07e-08,1;UBERON:0000489,1.15e-08,31;UBERON:0004211,1.57e-08,15;UBERON:0009773,1.57e-08,15;UBERON:0001231,1.57e-08,15;UBERON:0001285,1.57e-08,15;UBERON:0007684,1.57e-08,15;UBERON:0004208,1.57e-08,15;UBERON:0006555,5.29e-08,16;UBERON:0004819,5.29e-08,16 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.982935746006035,5.58240934377942,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0,0.125542639594803,0.0764134057479513,0,0,0,0,0.464448369948228,0,0.30120591877825,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0.822335776043652,0,0,0,0.47296445977717,0,0,0,0.188242339542605,0,0.449446968890169,0.306083892370903,0,0.639337125799041,0,0,0,0,0,0,0,0.521482918420201,0.217188844705117,0.605399502633369,0,0,0,0,0,0,0,0,0,0.59675003159727,0,0,0,0,0,0,0,0,0,0,0,0.382273228125229,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14828656316206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0.347140501607594,0,0.838998872419812,0.550236083880135,0,0,0,0,0,0,0.732186172644509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.48000529050296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0,0,0.121973706129595,0.132529768321485,0.348581828608555,0.10366105501537,0,0,0,0,0,0,0,0.354920400119532,0.168584690078102,0.482022059766964,0.330881918197182,0.217879444092406,0.474541238222193,0.943819157121151,0.98110732562673,0.769494313892781,0.738155454624648,0,0.4115740113314,0,0,0,0,0,0.122988438543114,0,0.109750285408626,0,0.100528972411631,0,0,0,0,0,0,0.144366447761074,0,0.190254152234598,2.37061319387782,5.15091697256924,0,0,0,0.93733833986777,0.16798212819886,0.141775097242386,0,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0.102827492703324,0.300343057843917,0,0,0.43596006883328,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335032530668698,0,0,0,0,0,0,0,0.415941723061614,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303127571446259,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.362578348774867,0.40101294060657,0.184161977871793,0,0,0,0.451199612907412,0.539107359730903,0.784349769176855,1.46139224653261,0.316654886678627,0,0,0.215915916102139,3.08454505380579,0,0,0.509752546090077,1.66215201785745,0.223874754722178,0,0,0,0.328014645699706,0,0,0,0.330037999682352,0.574265537996172,0,0,0,0,0,0,0,0,0,0.0890320356467374,0.495854746082934,0.384380134730212,0,0.30347334256665,0,0,0,0,0,0,0,0.143124886741991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.43050537267123,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0.106824071127473,0,1.96032172784825,0,0,0.0711418433484141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.36408156524854,0,0,0.23874448473769,0,0,0,0,0,0.16480387422676,0.422250816255987,0,0,1.25966373927138,0,0,0,0.179736702294654,0.537063524026827,0,0,0,1.11136990144637,0,0.0927680981618513,0,2.3438498497671,2.53633999988968,0.724999575434793,0,1.77977555204936,0.945550727071745,0,0,0,1.77148277162768,0.120596438625408,0,0,0,0,0.10893846351899,0.139423744278603,0,0.227884111694002,1.38338342632836,1.25660702173681,0.325942115766024,0.31900115973192,0.366390373607449,1.06606955203727,0,0,0,0,0,0,0,0,0.421996129056054,0.163232808159148,0,0,0,0.0884575645033392,0,0,0.247127877893006,0.104421949505455,0,0.802577647298789,0.234264445725339,0,0.782658475728359,0.242780379534093,0,0,0.61214552326098,0,13.0781374890609,2.59220478493118,0,0,0.313932918407225,0,0,0.138674673013139,0,0.0979923974143777,0.261177619741208,0.698906672968121,0.171986032471617,0.0967563312890851,0.146178634172371,0,0.0969890164884194,0.176512253383001,0,0,0.19871461170299,0,1.17330829640882,0.0801588202515337,0,0.19980960958213,0.144090417154106,0,0,0,0,0.471388069233591,0,0.209205692624666,0.101998217636322,0,0,0,0,0,0,0.279282401272254,0,0,0.399358000997982,0,0,0,0,0,0.0787831823072236,0.247247575143499,0.13480708770837,0.0984274815147488,0,0,0.136203406111576,0.160753148465019,0.137539436597234,0,0.899895566206002,0,0,0,0,0.104909176269996,0.316801009558219,0,0.191915197319445,0,0,0.5085370753095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157204305099666,0,0,0,0,1.27668251554036,0,0,0,0,0.314108192500469,0,0,0,0.573409195690071,0,0.0620964029413835,0,0.249960815924213,0,0.285465333544967,0,0,0.434763085832475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521745061811734,0,0,0,0,0.214821114084977,0,0,0,0,0,0,0,0.428883182749851,0,0,0,0.244736704506468,0.537266523244462,0,0.657852148736121,0,0,0.168942440653073,0.256241518587947,0,0.607719912354764,0,0,0,0,0,0.245772908753719,0.845248493434508,0.39997479170986,0,0,0,0,0,0,0,0.107824811396682,0,0,0,0,0,0,0,0,0,0.705351887381368,0.3062454773532,0,0,0,0,0,0,0,0,0.0981477185010256,0.235939446695481,0,0.231051332300676,0,0,0.198916222116275,0,0,0,3.92860041722134,0,0.295712172434091,0,0,0,0,0,0,0,0,0.894336993477167,0,0,0,0,0,0,0,0.0679697329768317,0.0657727735628491,0.118193840883968,0.222462803784138,0.078493092850514,0,0.560544326627578,0,0,0,0,0.632054446930906,0.23248285073625,0,0,0,0,0.691259661814092,0.430227358820278,0,0,0.423387050190929,0.68732060563215,0.31020638566432,0,0.223710863595585,0,0.365753774946808,0,0,0,0,0.935757853848423,1.19370465096821,0,0,0,6.49140227336696,0,0,4.23285566725371,0.490296643507811,2.82811856521951,0,0,0.4226557275834,0,0,0,0,0.357107877211315,0,0.0802413666891683,0,0,0,0.315543124386369,0,0,0,0,0,0,0,0,0,0.509944148709909,0,0.275684698604535,0,0,0,0,0,0,0,0.0645889098360061,0.124149428591716,0,0.0636471582781649,0,0,0,0,0.143444410785353,0,0.651226148887796,0.320182037633146,0,0,0,0.122241444182866,0,0,0.201273793591026,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0.982935746006035,5.58240934377942,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0,0.125542639594803,0.0764134057479513,0,0,0,0,0.464448369948228,0,0.30120591877825,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0.822335776043652,0,0,0,0.47296445977717,0,0,0,0.188242339542605,0,0.449446968890169,0.306083892370903,0,0.639337125799041,0,0,0,0,0,0,0,0.521482918420201,0.217188844705117,0.605399502633369,0,0,0,0,0,0,0,0,0,0.59675003159727,0,0,0,0,0,0,0,0,0,0,0,0.382273228125229,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14828656316206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0.347140501607594,0,0.838998872419812,0.550236083880135,0,0,0,0,0,0,0.732186172644509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.48000529050296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0,0,0.121973706129595,0.132529768321485,0.348581828608555,0.10366105501537,0,0,0,0,0,0,0,0.354920400119532,0.168584690078102,0.482022059766964,0.330881918197182,0.217879444092406,0.474541238222193,0.943819157121151,0.98110732562673,0.769494313892781,0.738155454624648,0,0.4115740113314,0,0,0,0,0,0.122988438543114,0,0.109750285408626,0,0.100528972411631,0,0,0,0,0,0,0.144366447761074,0,0.190254152234598,2.37061319387782,5.15091697256924,0,0,0,0.93733833986777,0.16798212819886,0.141775097242386,0,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0.102827492703324,0.300343057843917,0,0,0.43596006883328,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335032530668698,0,0,0,0,0,0,0,0.415941723061614,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303127571446259,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.362578348774867,0.40101294060657,0.184161977871793,0,0,0,0.451199612907412,0.539107359730903,0.784349769176855,1.46139224653261,0.316654886678627,0,0,0.215915916102139,3.08454505380579,0,0,0.509752546090077,1.66215201785745,0.223874754722178,0,0,0,0.328014645699706,0,0,0,0.330037999682352,0.574265537996172,0,0,0,0,0,0,0,0,0,0.0890320356467374,0.495854746082934,0.384380134730212,0,0.30347334256665,0,0,0,0,0,0,0,0.143124886741991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.43050537267123,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0.106824071127473,0,1.96032172784825,0,0,0.0711418433484141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.36408156524854,0,0,0.23874448473769,0,0,0,0,0,0.16480387422676,0.422250816255987,0,0,1.25966373927138,0,0,0,0.179736702294654,0.537063524026827,0,0,0,1.11136990144637,0,0.0927680981618513,0,2.3438498497671,2.53633999988968,0.724999575434793,0,1.77977555204936,0.945550727071745,0,0,0,1.77148277162768,0.120596438625408,0,0,0,0,0.10893846351899,0.139423744278603,0,0.227884111694002,1.38338342632836,1.25660702173681,0.325942115766024,0.31900115973192,0.366390373607449,1.06606955203727,0,0,0,0,0,0,0,0,0.421996129056054,0.163232808159148,0,0,0,0.0884575645033392,0,0,0.247127877893006,0.104421949505455,0,0.802577647298789,0.234264445725339,0,0.782658475728359,0.242780379534093,0,0,0.61214552326098,0,13.0781374890609,2.59220478493118,0,0,0.313932918407225,0,0,0.138674673013139,0,0.0979923974143777,0.261177619741208,0.698906672968121,0.171986032471617,0.0967563312890851,0.146178634172371,0,0.0969890164884194,0.176512253383001,0,0,0.19871461170299,0,1.17330829640882,0.0801588202515337,0,0.19980960958213,0.144090417154106,0,0,0,0,0.471388069233591,0,0.209205692624666,0.101998217636322,0,0,0,0,0,0,0.279282401272254,0,0,0.399358000997982,0,0,0,0,0,0.0787831823072236,0.247247575143499,0.13480708770837,0.0984274815147488,0,0,0.136203406111576,0.160753148465019,0.137539436597234,0,0.899895566206002,0,0,0,0,0.104909176269996,0.316801009558219,0,0.191915197319445,0,0,0.5085370753095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157204305099666,0,0,0,0,1.27668251554036,0,0,0,0,0.314108192500469,0,0,0,0.573409195690071,0,0.0620964029413835,0,0.249960815924213,0,0.285465333544967,0,0,0.434763085832475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521745061811734,0,0,0,0,0.214821114084977,0,0,0,0,0,0,0,0.428883182749851,0,0,0,0.244736704506468,0.537266523244462,0,0.657852148736121,0,0,0.168942440653073,0.256241518587947,0,0.607719912354764,0,0,0,0,0,0.245772908753719,0.845248493434508,0.39997479170986,0,0,0,0,0,0,0,0.107824811396682,0,0,0,0,0,0,0,0,0,0.705351887381368,0.3062454773532,0,0,0,0,0,0,0,0,0.0981477185010256,0.235939446695481,0,0.231051332300676,0,0,0.198916222116275,0,0,0,3.92860041722134,0,0.295712172434091,0,0,0,0,0,0,0,0,0.894336993477167,0,0,0,0,0,0,0,0.0679697329768317,0.0657727735628491,0.118193840883968,0.222462803784138,0.078493092850514,0,0.560544326627578,0,0,0,0,0.632054446930906,0.23248285073625,0,0,0,0,0.691259661814092,0.430227358820278,0,0,0.423387050190929,0.68732060563215,0.31020638566432,0,0.223710863595585,0,0.365753774946808,0,0,0,0,0.935757853848423,1.19370465096821,0,0,0,6.49140227336696,0,0,4.23285566725371,0.490296643507811,2.82811856521951,0,0,0.4226557275834,0,0,0,0,0.357107877211315,0,0.0802413666891683,0,0,0,0.315543124386369,0,0,0,0,0,0,0,0,0,0.509944148709909,0,0.275684698604535,0,0,0,0,0,0,0,0.0645889098360061,0.124149428591716,0,0.0636471582781649,0,0,0,0,0.143444410785353,0,0.651226148887796,0.320182037633146,0,0,0,0.122241444182866,0,0,0.201273793591026,0 | ||
|short_description=p@chr1:934939..934962,- | |short_description=p@chr1:934939..934962,- | ||
}} | }} |
Latest revision as of 11:23, 28 July 2015
Short description: | p@chr1:934939..934962, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:934939..934962, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
peptide hormone secreting cell | 2.82e-09 | 1 |
enteroendocrine cell | 2.82e-09 | 1 |
type D enteroendocrine cell | 2.82e-09 | 1 |
somatostatin secreting cell | 2.82e-09 | 1 |
pancreatic D cell | 2.82e-09 | 1 |
progenitor cell of endocrine pancreas | 2.82e-09 | 1 |
epithelial cell of nephron | 1.57e-08 | 15 |
kidney cell | 1.54e-07 | 17 |
kidney epithelial cell | 1.54e-07 | 17 |
glomerular endothelial cell | 2.46e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
breast | 8.17e-13 | 10 |
chest | 1.15e-11 | 11 |
kidney | 1.98e-10 | 26 |
kidney mesenchyme | 1.98e-10 | 26 |
upper urinary tract | 1.98e-10 | 26 |
kidney rudiment | 1.98e-10 | 26 |
kidney field | 1.98e-10 | 26 |
subdivision of trunk | 1.95e-09 | 112 |
stroma of bone marrow | 1.07e-08 | 1 |
cavitated compound organ | 1.15e-08 | 31 |
nephron epithelium | 1.57e-08 | 15 |
renal tubule | 1.57e-08 | 15 |
nephron tubule | 1.57e-08 | 15 |
nephron | 1.57e-08 | 15 |
uriniferous tubule | 1.57e-08 | 15 |
nephrogenic mesenchyme | 1.57e-08 | 15 |
excretory tube | 5.29e-08 | 16 |
kidney epithelium | 5.29e-08 | 16 |
Ontology term | p-value | n |
---|---|---|
thoracic cancer | 1.14e-31 | 4 |
breast cancer | 1.14e-31 | 4 |
cell type cancer | 7.77e-11 | 143 |
carcinoma | 5.64e-10 | 106 |
islet cell tumor | 2.40e-09 | 1 |
endocrine pancreas cancer | 2.40e-09 | 1 |
pancreatic endocrine carcinoma | 2.40e-09 | 1 |
somatostatinoma | 2.82e-09 | 1 |