FFCP PHASE1:Hg19::chr5:1882184..1882203,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=50805 | |EntrezGene=50805 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=6129 | |HGNC=6129 | ||
|TSSclassifier=strong | |||
|UniProt=P78413 | |UniProt=P78413 | ||
|association_with_transcript=-202bp_to_U90306_5end | |association_with_transcript=-202bp_to_U90306_5end | ||
|cluster_id=chr5:1882184..1882203,- | |||
|coexpression_cluster_id=C373 | |||
|description=CAGE_peak_4_at_IRX4_5end | |description=CAGE_peak_4_at_IRX4_5end | ||
|id=chr5:1882184..1882203,- | |id=chr5:1882184..1882203,- | ||
|ontology_enrichment_celltype=CL:0000039!3.66e-29!7;CL:0000586!3.66e-29!7;CL:0002327!5.48e-18!4;CL:0002322!2.40e-13!5;CL:0000080!1.65e-07!6;CL:0000540!4.64e-07!6;CL:0000031!4.64e-07!6;CL:0000404!4.64e-07!6;CL:0000221!6.81e-07!71;CL:0002077!7.36e-07!33 | |ontology_enrichment_celltype=CL:0000039!3.66e-29!7;CL:0000586!3.66e-29!7;CL:0002327!5.48e-18!4;CL:0002322!2.40e-13!5;CL:0000080!1.65e-07!6;CL:0000540!4.64e-07!6;CL:0000031!4.64e-07!6;CL:0000404!4.64e-07!6;CL:0000221!6.81e-07!71;CL:0002077!7.36e-07!33 | ||
|ontology_enrichment_celltype_v019=CL:0002379;2.37e-29;1!CL:0002535;1.15e-15;2!CL:0002327;2.52e-08;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002379,2.37e-29,1;CL:0002535,1.15e-15,2;CL:0002327,2.43e-08,4 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:3095!1.28e-08!22;DOID:2994!1.28e-08!22 | |||
|ontology_enrichment_disease_v019=DOID:3620;2.37e-29;1!DOID:3565;2.37e-29;1!DOID:4362;4.79e-07;5 | |||
|ontology_enrichment_disease_v019_2=DOID:3620,2.37e-29,1;DOID:3565,2.37e-29,1;DOID:4362,4.79e-07,5 | |||
|ontology_enrichment_uberon=UBERON:0001911!5.48e-18!4;UBERON:0005333!5.48e-18!4;UBERON:0008425!5.48e-18!4;UBERON:0005311!5.48e-18!4;UBERON:0003135!1.76e-09!11;UBERON:0000076!5.02e-09!8;UBERON:0000473!1.32e-08!8 | |||
|ontology_enrichment_uberon_v019=UBERON:0002331;3.30e-26;10!UBERON:0000178;9.28e-18;15!UBERON:0000179;9.28e-18;15!UBERON:0000463;9.28e-18;15!UBERON:0006955;1.15e-15;2!UBERON:0004801;1.15e-15;2!UBERON:0000478;2.19e-11;24!UBERON:0002390;8.54e-09;32!UBERON:0001911;2.52e-08;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002331,3.30e-26,10;UBERON:0000358,3.30e-26,10;UBERON:0000307,3.30e-26,10;UBERON:0000091,3.30e-26,10;UBERON:0000087,3.30e-26,10;UBERON:0007010,3.30e-26,10;UBERON:0007806,3.30e-26,10;UBERON:0008780,3.30e-26,10;UBERON:0005728,3.30e-26,10;UBERON:0000178,9.28e-18,15;UBERON:0000179,9.28e-18,15;UBERON:0000463,9.28e-18,15;UBERON:0006955,1.15e-15,2;UBERON:0004801,1.15e-15,2;UBERON:0000478,2.19e-11,24;UBERON:0001911,2.43e-08,4;UBERON:0005333,2.43e-08,4;UBERON:0008425,2.43e-08,4;UBERON:0005311,2.43e-08,4 | |||
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| ||
|short_description=p4@IRX4 | |short_description=p4@IRX4 | ||
}} | }} |
Latest revision as of 12:19, 17 September 2015
Short description: | p4@IRX4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_IRX4_5end |
Coexpression cluster: | C373_epidermoid_Prostate_cord_squamous_testicular_pharyngeal_testis |
Association with transcript: | -202bp_to_U90306_5end |
EntrezGene: | IRX4 |
HGNC: | 6129 |
UniProt: | P78413 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
meningothelial cell | 2.37e-29 | 1 |
epithelial cell of cervix | 1.15e-15 | 2 |
mammary gland epithelial cell | 2.43e-08 | 4 |
Ontology term | p-value | n |
---|---|---|
umbilical cord | 3.30e-26 | 10 |
blastocyst | 3.30e-26 | 10 |
blastula | 3.30e-26 | 10 |
bilaminar disc | 3.30e-26 | 10 |
inner cell mass | 3.30e-26 | 10 |
cleaving embryo | 3.30e-26 | 10 |
connecting stalk | 3.30e-26 | 10 |
inner cell mass derived epiblast | 3.30e-26 | 10 |
extraembryonic mesoderm | 3.30e-26 | 10 |
blood | 9.28e-18 | 15 |
haemolymphatic fluid | 9.28e-18 | 15 |
organism substance | 9.28e-18 | 15 |
uterine epithelium | 1.15e-15 | 2 |
cervix epithelium | 1.15e-15 | 2 |
extraembryonic structure | 2.19e-11 | 24 |
mammary gland | 2.43e-08 | 4 |
mammary bud | 2.43e-08 | 4 |
mammary ridge | 2.43e-08 | 4 |
mammary placode | 2.43e-08 | 4 |
Ontology term | p-value | n |
---|---|---|
central nervous system cancer | 2.37e-29 | 1 |
meningioma | 2.37e-29 | 1 |
cervical cancer | 4.79e-07 | 5 |