FFCP PHASE1:Hg19::chr1:199996733..199996781,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2494 | |EntrezGene=2494 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7984 | |HGNC=7984 | ||
|TSSclassifier=strong | |||
|UniProt=Q8WY08,F1D8R9,O00482,Q9UEC0 | |UniProt=Q8WY08,F1D8R9,O00482,Q9UEC0 | ||
|association_with_transcript=0bp_to_ENST00000236914,ENST00000537715,NM_003822,NM_205860,uc001gvb.2,uc001gvc.2,uc009wzg.1_5end | |association_with_transcript=0bp_to_ENST00000236914,ENST00000537715,NM_003822,NM_205860,uc001gvb.2,uc001gvc.2,uc009wzg.1_5end | ||
|cluster_id=chr1:199996733..199996781,+ | |||
|coexpression_cluster_id=C1825 | |||
|description=CAGE_peak_1_at_NR5A2_5end | |description=CAGE_peak_1_at_NR5A2_5end | ||
|id=chr1:199996733..199996781,+ | |id=chr1:199996733..199996781,+ | ||
|ontology_enrichment_celltype=CL:0000181!1.25e-15!12;CL:0000417!1.25e-15!12;CL:0000668!1.25e-15!12;CL:0000414!1.25e-15!12;CL:0000412!1.25e-15!12;CL:0000182!1.25e-15!12;CL:0000223!1.73e-11!59 | |ontology_enrichment_celltype=CL:0000181!1.25e-15!12;CL:0000417!1.25e-15!12;CL:0000668!1.25e-15!12;CL:0000414!1.25e-15!12;CL:0000412!1.25e-15!12;CL:0000182!1.25e-15!12;CL:0000223!1.73e-11!59 | ||
|ontology_enrichment_celltype_v019=CL:0000182;1.02e-14;12!CL:0002563;9.95e-08;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,1.03e-14,12;CL:0000223,2.47e-08,58;CL:0002563,1.08e-07,4 | |||
|ontology_enrichment_development_v019=UBERON:0004161;7.53e-16;11!UBERON:0009497;2.19e-13;13!UBERON:0003104;5.71e-13;31!UBERON:0006242;3.57e-08;1!UBERON:0000358;4.89e-08;1!UBERON:0005425;6.68e-08;1 | |||
|ontology_enrichment_disease=DOID:4929!7.13e-09!2;DOID:3493!1.02e-08!2 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005409!9.94e-35!35;UBERON:0000160!1.46e-28!27;UBERON:0009854!1.78e-26!23;UBERON:0004921!2.78e-25!129;UBERON:0004185!2.78e-25!129;UBERON:0009497!2.97e-24!25;UBERON:0000015!2.97e-24!25;UBERON:0002423!2.97e-24!25;UBERON:0006235!2.97e-24!25;UBERON:0004161!2.97e-24!25;UBERON:0008835!1.08e-23!22;UBERON:0003894!1.08e-23!22;UBERON:0009856!4.51e-23!26;UBERON:0001007!8.67e-23!155;UBERON:0001555!8.67e-23!155;UBERON:0007026!8.67e-23!155;UBERON:0007499!1.59e-20!25;UBERON:0004119!3.15e-20!169;UBERON:0000925!3.15e-20!169;UBERON:0006595!3.15e-20!169;UBERON:0002107!1.85e-19!19;UBERON:0006925!1.85e-19!19;UBERON:0008836!1.85e-19!19;UBERON:0000059!9.69e-17!11;UBERON:0005057!1.92e-16!26;UBERON:0000077!2.04e-15!130;UBERON:0003929!3.44e-15!54;UBERON:0005172!9.86e-13!55;UBERON:0005173!9.86e-13!55;UBERON:0004907!1.12e-12!5;UBERON:0001041!1.52e-12!98;UBERON:0000949!2.64e-12!45;UBERON:0002108!2.87e-12!14;UBERON:0005911!2.12e-11!82;UBERON:0002417!3.82e-11!61;UBERON:0000916!3.82e-11!61;UBERON:0002365!3.86e-11!31;UBERON:0002330!3.86e-11!31;UBERON:0001155!6.91e-11!9;UBERON:0005177!5.96e-10!107;UBERON:0002368!1.22e-09!35;UBERON:0001052!2.17e-09!4;UBERON:0000481!4.56e-09!347;UBERON:0003104!2.03e-08!238;UBERON:0009142!2.03e-08!238;UBERON:0000466!9.29e-08!126;UBERON:0000945!1.30e-07!8;UBERON:0010039!1.30e-07!8;UBERON:0002114!1.72e-07!12 | |ontology_enrichment_uberon=UBERON:0005409!9.94e-35!35;UBERON:0000160!1.46e-28!27;UBERON:0009854!1.78e-26!23;UBERON:0004921!2.78e-25!129;UBERON:0004185!2.78e-25!129;UBERON:0009497!2.97e-24!25;UBERON:0000015!2.97e-24!25;UBERON:0002423!2.97e-24!25;UBERON:0006235!2.97e-24!25;UBERON:0004161!2.97e-24!25;UBERON:0008835!1.08e-23!22;UBERON:0003894!1.08e-23!22;UBERON:0009856!4.51e-23!26;UBERON:0001007!8.67e-23!155;UBERON:0001555!8.67e-23!155;UBERON:0007026!8.67e-23!155;UBERON:0007499!1.59e-20!25;UBERON:0004119!3.15e-20!169;UBERON:0000925!3.15e-20!169;UBERON:0006595!3.15e-20!169;UBERON:0002107!1.85e-19!19;UBERON:0006925!1.85e-19!19;UBERON:0008836!1.85e-19!19;UBERON:0000059!9.69e-17!11;UBERON:0005057!1.92e-16!26;UBERON:0000077!2.04e-15!130;UBERON:0003929!3.44e-15!54;UBERON:0005172!9.86e-13!55;UBERON:0005173!9.86e-13!55;UBERON:0004907!1.12e-12!5;UBERON:0001041!1.52e-12!98;UBERON:0000949!2.64e-12!45;UBERON:0002108!2.87e-12!14;UBERON:0005911!2.12e-11!82;UBERON:0002417!3.82e-11!61;UBERON:0000916!3.82e-11!61;UBERON:0002365!3.86e-11!31;UBERON:0002330!3.86e-11!31;UBERON:0001155!6.91e-11!9;UBERON:0005177!5.96e-10!107;UBERON:0002368!1.22e-09!35;UBERON:0001052!2.17e-09!4;UBERON:0000481!4.56e-09!347;UBERON:0003104!2.03e-08!238;UBERON:0009142!2.03e-08!238;UBERON:0000466!9.29e-08!126;UBERON:0000945!1.30e-07!8;UBERON:0010039!1.30e-07!8;UBERON:0002114!1.72e-07!12 | ||
|ontology_enrichment_uberon_v019=UBERON:0000160;4.18e-29;17!UBERON:0005409;1.73e-22;22!UBERON:0002107;1.17e-17;19!UBERON:0006925;1.17e-17;19!UBERON:0002423;4.32e-17;25!UBERON:0000059;4.07e-15;11!UBERON:0004921;3.64e-13;33!UBERON:0002108;4.49e-13;4!UBERON:0001155;3.24e-12;9!UBERON:0002365;1.36e-10;31!UBERON:0002330;1.36e-10;31!UBERON:0001007;2.28e-09;81!UBERON:0002368;4.61e-09;33!UBERON:0000949;1.83e-08;43!UBERON:0000941;6.68e-08;1!UBERON:0001785;6.68e-08;1!UBERON:0002464;6.68e-08;1!UBERON:0004904;6.68e-08;1!UBERON:0001021;6.68e-08;1!UBERON:0001242;9.95e-08;4!UBERON:0001262;9.95e-08;4!UBERON:0004786;9.95e-08;4!UBERON:0004808;9.95e-08;4!UBERON:0001277;9.95e-08;4!UBERON:0001052;1.45e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,4.55e-29,17;UBERON:0005409,1.03e-19,25;UBERON:0002107,1.18e-17,19;UBERON:0006925,1.18e-17,19;UBERON:0008836,1.18e-17,19;UBERON:0009497,4.28e-17,25;UBERON:0000015,4.28e-17,25;UBERON:0002423,4.28e-17,25;UBERON:0006235,4.28e-17,25;UBERON:0004161,4.28e-17,25;UBERON:0004921,2.60e-15,118;UBERON:0008835,3.93e-15,22;UBERON:0003894,3.93e-15,22;UBERON:0000059,4.08e-15,11;UBERON:0009854,1.94e-14,23;UBERON:0003929,9.83e-14,54;UBERON:0001007,2.15e-13,145;UBERON:0001555,2.15e-13,145;UBERON:0007026,2.15e-13,145;UBERON:0007499,3.24e-13,25;UBERON:0002108,4.98e-13,4;UBERON:0009856,1.13e-12,26;UBERON:0001155,3.15e-12,9;UBERON:0004119,8.41e-12,160;UBERON:0000925,8.41e-12,160;UBERON:0006595,8.41e-12,160;UBERON:0000949,1.91e-11,45;UBERON:0002365,1.72e-10,31;UBERON:0002330,1.72e-10,31;UBERON:0005911,4.59e-10,82;UBERON:0011216,2.17e-09,223;UBERON:0005172,3.39e-09,54;UBERON:0005173,3.39e-09,54;UBERON:0002368,3.41e-09,35;UBERON:0002417,3.90e-08,60;UBERON:0000916,3.90e-08,60;UBERON:0000941,6.68e-08,1;UBERON:0001785,6.68e-08,1;UBERON:0002464,6.68e-08,1;UBERON:0004904,6.68e-08,1;UBERON:0001021,6.68e-08,1;UBERON:0003902,6.68e-08,1;UBERON:0005425,6.68e-08,1;UBERON:0005177,7.46e-08,101;UBERON:0001242,1.08e-07,4;UBERON:0001262,1.08e-07,4;UBERON:0004786,1.08e-07,4;UBERON:0004808,1.08e-07,4;UBERON:0001277,1.08e-07,4;UBERON:0001052,1.63e-07,4 | |||
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|short_description=p1@NR5A2 | |short_description=p1@NR5A2 | ||
}} | }} |
Latest revision as of 15:44, 19 September 2015
Short description: | p1@NR5A2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_NR5A2_5end |
Coexpression cluster: | C1825_pancreas_Hepatocyte_liver_colon_gastric_hepatoma_hepatoblastoma |
Association with transcript: | 0bp_to_ENST00000236914, ENST00000537715, NM_003822, NM_205860, uc001gvb.2, uc001gvc.2, uc009wzg.1_5end |
EntrezGene: | NR5A2 |
HGNC: | 7984 |
UniProt: | Q8WY08F1D8R9O00482Q9UEC0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 1.03e-14 | 12 |
endodermal cell | 2.47e-08 | 58 |
intestinal epithelial cell | 1.08e-07 | 4 |