FFCP PHASE1:Hg19::chr1:164559556..164559568,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5087 | |EntrezGene=5087 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8632 | |HGNC=8632 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-18bp_to_ENST00000496120_5end | |association_with_transcript=-18bp_to_ENST00000496120_5end | ||
|cluster_id=chr1:164559556..164559568,+ | |||
|coexpression_cluster_id=C108 | |||
|description=CAGE_peak_21_at_PBX1_5end | |description=CAGE_peak_21_at_PBX1_5end | ||
|id=chr1:164559556..164559568,+ | |id=chr1:164559556..164559568,+ | ||
|ontology_enrichment_celltype=CL:0002322!1.05e-11!5;CL:0000064!4.63e-08!3;CL:0005012!4.63e-08!3;CL:0000067!4.63e-08!3;CL:0002304!4.63e-08!3 | |ontology_enrichment_celltype=CL:0002322!1.05e-11!5;CL:0000064!4.63e-08!3;CL:0005012!4.63e-08!3;CL:0000067!4.63e-08!3;CL:0002304!4.63e-08!3 | ||
|ontology_enrichment_celltype_v019=CL:0002563;4.53e-29;4!CL:0002253;2.37e-15;2!CL:0002327;1.70e-08;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,4.86e-29,4;CL:0002253,2.74e-15,2;CL:0002327,1.70e-08,4 | |||
|ontology_enrichment_development_v019=UBERON:0008425;7.48e-30;1!UBERON:0003104;1.45e-15;31!UBERON:0003918;2.74e-12;10!UBERON:0007687;2.74e-12;10 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:5093;3.16e-29;4!DOID:1612;3.16e-29;4 | |||
|ontology_enrichment_disease_v019_2=DOID:5093,2.74e-29,4;DOID:1612,2.74e-29,4;DOID:7,2.85e-07,39 | |||
|ontology_enrichment_uberon=UBERON:0003135!4.89e-14!11;UBERON:0007023!1.07e-13!115;UBERON:0003101!1.08e-11!22;UBERON:0000079!1.08e-11!22;UBERON:0000473!2.58e-11!8;UBERON:0000488!2.18e-10!4;UBERON:0007625!4.47e-10!11;UBERON:0003056!1.76e-08!61;UBERON:0001778!4.63e-08!3;UBERON:0001775!4.63e-08!3;UBERON:0002346!2.60e-07!90;UBERON:0003075!4.58e-07!86;UBERON:0007284!4.58e-07!86;UBERON:0002203!6.77e-07!6;UBERON:0001768!6.77e-07!6 | |ontology_enrichment_uberon=UBERON:0003135!4.89e-14!11;UBERON:0007023!1.07e-13!115;UBERON:0003101!1.08e-11!22;UBERON:0000079!1.08e-11!22;UBERON:0000473!2.58e-11!8;UBERON:0000488!2.18e-10!4;UBERON:0007625!4.47e-10!11;UBERON:0003056!1.76e-08!61;UBERON:0001778!4.63e-08!3;UBERON:0001775!4.63e-08!3;UBERON:0002346!2.60e-07!90;UBERON:0003075!4.58e-07!86;UBERON:0007284!4.58e-07!86;UBERON:0002203!6.77e-07!6;UBERON:0001768!6.77e-07!6 | ||
|ontology_enrichment_uberon_v019=UBERON:0001242;4.53e-29;4!UBERON:0001262;4.53e-29;4!UBERON:0004786;4.53e-29;4!UBERON:0004808;4.53e-29;4!UBERON:0001277;4.53e-29;4!UBERON:0000485;4.19e-17;7!UBERON:0003929;4.19e-17;7!UBERON:0003350;4.22e-15;8!UBERON:0000310;2.37e-12;10!UBERON:0001443;2.55e-11;11!UBERON:0001911;1.70e-08;4!UBERON:0001052;2.43e-08;4!UBERON:0000160;3.00e-07;17!UBERON:0004907;6.39e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001242,4.86e-29,4;UBERON:0001262,4.86e-29,4;UBERON:0004786,4.86e-29,4;UBERON:0004808,4.86e-29,4;UBERON:0001277,4.86e-29,4;UBERON:0003350,4.37e-15,8;UBERON:0000485,1.58e-13,9;UBERON:0000310,2.24e-12,10;UBERON:0001443,2.42e-11,11;UBERON:0001911,1.70e-08,4;UBERON:0005333,1.70e-08,4;UBERON:0008425,1.70e-08,4;UBERON:0005311,1.70e-08,4;UBERON:0001052,2.61e-08,4;UBERON:0000160,3.04e-07,17;UBERON:0004907,6.77e-07,5 | |||
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| ||
|short_description=p21@PBX1 | |short_description=p21@PBX1 | ||
}} | }} |
Latest revision as of 09:17, 18 September 2015
Short description: | p21@PBX1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_21_at_PBX1_5end |
Coexpression cluster: | C108_breast_hepatoblastoma_MCF7_parotid_salivary_submaxillary_prostate |
Association with transcript: | -18bp_to_ENST00000496120_5end |
EntrezGene: | PBX1 |
HGNC: | 8632 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 4.86e-29 | 4 |
epithelial cell of large intestine | 2.74e-15 | 2 |
mammary gland epithelial cell | 1.70e-08 | 4 |
Ontology term | p-value | n |
---|---|---|
intestinal mucosa | 4.86e-29 | 4 |
wall of intestine | 4.86e-29 | 4 |
gastrointestinal system mucosa | 4.86e-29 | 4 |
gastrointestinal system epithelium | 4.86e-29 | 4 |
intestinal epithelium | 4.86e-29 | 4 |
epithelium of mucosa | 4.37e-15 | 8 |
simple columnar epithelium | 1.58e-13 | 9 |
breast | 2.24e-12 | 10 |
chest | 2.42e-11 | 11 |
mammary gland | 1.70e-08 | 4 |
mammary bud | 1.70e-08 | 4 |
mammary ridge | 1.70e-08 | 4 |
mammary placode | 1.70e-08 | 4 |
rectum | 2.61e-08 | 4 |
intestine | 3.04e-07 | 17 |
lower digestive tract | 6.77e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
thoracic cancer | 2.74e-29 | 4 |
breast cancer | 2.74e-29 | 4 |
disease of anatomical entity | 2.85e-07 | 39 |