FFCP PHASE1:Hg19::chr4:108969174..108969197,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr4:108969174..108969197,- | |||
|coexpression_cluster_id=C3185 | |||
|description=CAGE_peak_at_chr4:108969174..108969197,- | |description=CAGE_peak_at_chr4:108969174..108969197,- | ||
|id=chr4:108969174..108969197,- | |id=chr4:108969174..108969197,- | ||
|ontology_enrichment_celltype=CL:0000084!3.18e-22!25;CL:0000827!3.18e-22!25;CL:0000791!2.14e-21!18;CL:0000789!2.14e-21!18;CL:0002420!2.14e-21!18;CL:0002419!2.14e-21!18;CL:0000790!2.14e-21!18;CL:0000542!7.81e-16!53;CL:0000051!7.81e-16!53;CL:0000838!1.01e-14!52;CL:0000624!1.31e-13!6;CL:0000625!1.03e-11!11;CL:0000988!3.40e-08!182;CL:0002087!6.84e-08!119;CL:0000738!1.87e-07!140;CL:0000037!2.35e-07!172;CL:0000566!2.35e-07!172;CL:0000898!2.71e-07!3;CL:0000842!5.16e-07!3;CL:0000623!5.49e-07!3;CL:0000825!5.49e-07!3 | |ontology_enrichment_celltype=CL:0000084!3.18e-22!25;CL:0000827!3.18e-22!25;CL:0000791!2.14e-21!18;CL:0000789!2.14e-21!18;CL:0002420!2.14e-21!18;CL:0002419!2.14e-21!18;CL:0000790!2.14e-21!18;CL:0000542!7.81e-16!53;CL:0000051!7.81e-16!53;CL:0000838!1.01e-14!52;CL:0000624!1.31e-13!6;CL:0000625!1.03e-11!11;CL:0000988!3.40e-08!182;CL:0002087!6.84e-08!119;CL:0000738!1.87e-07!140;CL:0000037!2.35e-07!172;CL:0000566!2.35e-07!172;CL:0000898!2.71e-07!3;CL:0000842!5.16e-07!3;CL:0000623!5.49e-07!3;CL:0000825!5.49e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000084;5.00e-52;25!CL:0000791;4.09e-38;18!CL:0000789;4.09e-38;18!CL:0002419;4.09e-38;18!CL:0000624;1.44e-29;6!CL:0000625;2.75e-16;11!CL:0000542;9.61e-11;53!CL:0000815;9.01e-07;2!CL:0000792;9.01e-07;2!CL:0002677;9.01e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000084,3.73e-52,25;CL:0000827,3.73e-52,25;CL:0000791,3.06e-38,18;CL:0000789,3.06e-38,18;CL:0002420,3.06e-38,18;CL:0002419,3.06e-38,18;CL:0000790,3.06e-38,18;CL:0000624,1.07e-29,6;CL:0000838,2.27e-24,52;CL:0000542,6.97e-24,53;CL:0000051,6.97e-24,53;CL:0000625,2.54e-16,11;CL:0002087,4.27e-10,115;CL:0000738,5.07e-10,136;CL:0002031,1.30e-09,120;CL:0000988,1.07e-08,177;CL:0000037,8.64e-08,168;CL:0002032,8.83e-07,161;CL:0000837,8.83e-07,161 | |||
|ontology_enrichment_development_v019=CL:0000790;4.09e-38;18!CL:0000051;9.61e-11;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!8.16e-08!15;UBERON:0000179!8.16e-08!15;UBERON:0000463!8.16e-08!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;8.54e-23;2!UBERON:0005058;8.54e-23;2!UBERON:0009113;8.54e-23;2!UBERON:0004177;1.06e-09;5!UBERON:0005057;1.06e-09;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,7.52e-12,4;UBERON:0005058,7.52e-12,4;UBERON:0009113,7.52e-12,4;UBERON:0003295,7.52e-12,4;UBERON:0005562,7.52e-12,4;UBERON:0003351,3.37e-08,6;UBERON:0004177,3.79e-07,7;UBERON:0005057,3.79e-07,7 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0.136874425072884,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0.293600439334847,0,0.200544447470142,0.217010870715852,0,0,0.257575567634187,0,0,0,0,0,0,0.28769239232215,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.57367816091066,1.57204305099666,2.67281948699362,0.334372990781356,0.651844533267181,0.473447805734733,0,0,1.17842362989935,0.221533894583621,0.270803863765016,0,0,0.657751618414705,1.65810010671509,0.289803085735052,2.66915813691709,0.802622484269139,0,0.226618685395132,0.383220493601921,0,1.01207876807801,0.318565414324097,0,0,0.451725357233318,0.255973222308837,1.24930726552346,2.13099526839615,1.64225599384209,0.403213486449465,0,1.44824403882799,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10075209822764,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0.643240938192885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.20731549707325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0,0.901029173531752,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14861935834114,0,0,0,0,0,0.591092280605782,0.431255149719035,0.385029108839245,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0868836144680828,0.195801157462741,0,0.620304078368662,0.862856803274467,0.213455115606889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0.165018999841176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.714695326373367,0.822724546172388,0.648473311192717,0,0.79312517629427,0,0,0,0.371606350251437,0.577076851905779,3.84165954081436,2.39139409093234,0,0,0,0,0,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284136146806413,0,0,0,0,0,0.111308705022906,0,0,0,0,0.251932747854276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,9.19739683761629,0.627921025580099,0.498635045700469,0,0,0,0,0.476809736941136,0,0,0,0.649165919226273,0,0,0,0,0.123563938946503,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135904206073614,0,0.101998217636322,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0824158583811665,0,0,0,0,0.136203406111576,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.992332043623902,0.395223263795889,0.365377795142688,0,0,0,0,0,0.157054096250234,0,0,0,0,0.110929051536852,0,0,0,0,0.856396000634902,0,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256241518587947,0,0,0,0,0.132864840313363,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.94634094001504,0,0,0.3062454773532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.147856086217045,0,0,0.206686796501184,0.0634158101939068,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0,0,0,0,0,0,0,0,0.795803100645473,0,0.45178432815584,0,0.754814217833368,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0802413666891683,0,0,0,0.315543124386369,0,0,0,0,0,0,0,0,0.253397002022874,0,0,0,0,0,0,0,0,0,0.476128862927481,1.42095601639213,1.1794195716213,0.112131862580613,0,0,0,0,0.134704106029175,0,0,0,0,0,0,0,0,0,0,0.402547587182052,0 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| ||
|short_description=p@chr4:108969174..108969197,- | |short_description=p@chr4:108969174..108969197,- | ||
}} | }} |
Latest revision as of 00:46, 30 July 2015
Short description: | p@chr4:108969174..108969197, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr4:108969174..108969197, - |
Coexpression cluster: | C3185_chronic_acute_thymus_CD4_Hodgkin_CD8_NK |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
T cell | 3.73e-52 | 25 |
pro-T cell | 3.73e-52 | 25 |
mature alpha-beta T cell | 3.06e-38 | 18 |
alpha-beta T cell | 3.06e-38 | 18 |
immature T cell | 3.06e-38 | 18 |
mature T cell | 3.06e-38 | 18 |
immature alpha-beta T cell | 3.06e-38 | 18 |
CD4-positive, alpha-beta T cell | 1.07e-29 | 6 |
lymphoid lineage restricted progenitor cell | 2.27e-24 | 52 |
lymphocyte | 6.97e-24 | 53 |
common lymphoid progenitor | 6.97e-24 | 53 |
CD8-positive, alpha-beta T cell | 2.54e-16 | 11 |
nongranular leukocyte | 4.27e-10 | 115 |
leukocyte | 5.07e-10 | 136 |
hematopoietic lineage restricted progenitor cell | 1.30e-09 | 120 |
hematopoietic cell | 1.07e-08 | 177 |
hematopoietic stem cell | 8.64e-08 | 168 |
hematopoietic oligopotent progenitor cell | 8.83e-07 | 161 |
hematopoietic multipotent progenitor cell | 8.83e-07 | 161 |
Ontology term | p-value | n |
---|---|---|
thymus | 7.52e-12 | 4 |
hemolymphoid system gland | 7.52e-12 | 4 |
thymic region | 7.52e-12 | 4 |
pharyngeal gland | 7.52e-12 | 4 |
thymus primordium | 7.52e-12 | 4 |
pharyngeal epithelium | 3.37e-08 | 6 |
hemopoietic organ | 3.79e-07 | 7 |
immune organ | 3.79e-07 | 7 |