FFCP PHASE1:Hg19::chr1:119837700..119837705,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:119837700..119837705,+ | |||
|coexpression_cluster_id=C86 | |||
|description=CAGE_peak_at_chr1:119837700..119837705,+ | |description=CAGE_peak_at_chr1:119837700..119837705,+ | ||
|id=chr1:119837700..119837705,+ | |id=chr1:119837700..119837705,+ | ||
|ontology_enrichment_celltype=CL:0002253!1.15e-15!2;CL:0000322!7.42e-11!3;CL:0000214!1.09e-10!3;CL:0002563!1.70e-08!4;CL:0000082!5.66e-07!19 | |ontology_enrichment_celltype=CL:0002253!1.15e-15!2;CL:0000322!7.42e-11!3;CL:0000214!1.09e-10!3;CL:0002563!1.70e-08!4;CL:0000082!5.66e-07!19 | ||
|ontology_enrichment_celltype_v019=CL:0002253;2.74e-50;2!CL:0000322;5.96e-34;3!CL:0002563;5.56e-26;4!CL:0002202;2.45e-12;9!CL:0002632;2.45e-12;9!CL:0002368;5.70e-09;13!CL:0002076;1.92e-07;42 | |||
|ontology_enrichment_celltype_v019_2=CL:0002253,2.74e-50,2;CL:0000322,5.96e-34,3;CL:0002563,5.56e-26,4;CL:0002202,2.45e-12,9;CL:0002632,2.45e-12,9;CL:0002076,1.07e-10,42;CL:0002368,5.70e-09,13;CL:0000223,4.33e-08,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0050619!1.78e-29!1;DOID:1357!1.78e-29!1;DOID:1325!2.90e-17!7;DOID:3904!2.90e-17!7;DOID:0050615!1.06e-16!16;DOID:3910!1.33e-15!2;DOID:3905!1.15e-13!9;DOID:1324!1.37e-08!15;DOID:5409!1.96e-08!4;DOID:3908!5.08e-07!5 | |ontology_enrichment_disease=DOID:0050619!1.78e-29!1;DOID:1357!1.78e-29!1;DOID:1325!2.90e-17!7;DOID:3904!2.90e-17!7;DOID:0050615!1.06e-16!16;DOID:3910!1.33e-15!2;DOID:3905!1.15e-13!9;DOID:1324!1.37e-08!15;DOID:5409!1.96e-08!4;DOID:3908!5.08e-07!5 | ||
|ontology_enrichment_disease_v019=DOID:3910;4.52e-50;2!DOID:3908;5.15e-21;5!DOID:1325;1.91e-15;7!DOID:3904;1.91e-15;7!DOID:3905;2.45e-12;9!DOID:3119;1.86e-08;14!DOID:1324;5.93e-08;15!DOID:0050615;1.54e-07;16 | |||
|ontology_enrichment_disease_v019_2=DOID:3910,4.52e-50,2;DOID:3908,5.15e-21,5;DOID:1325,1.91e-15,7;DOID:3904,1.91e-15,7;DOID:3905,2.45e-12,9;DOID:3119,1.86e-08,14;DOID:1324,5.93e-08,15;DOID:0050615,1.54e-07,16 | |||
|ontology_enrichment_uberon=UBERON:0001764!1.78e-29!1;UBERON:0001825!1.78e-29!1;UBERON:0004903!1.33e-15!2;UBERON:0002173!1.33e-15!2;UBERON:0002186!1.33e-15!2;UBERON:0004821!7.42e-11!3;UBERON:0003215!7.42e-11!3;UBERON:0002299!7.42e-11!3;UBERON:0006524!7.42e-11!3;UBERON:0008874!7.42e-11!3;UBERON:0002169!7.42e-11!3;UBERON:0004894!7.42e-11!3;UBERON:0006915!1.09e-10!3;UBERON:0002018!1.09e-10!3;UBERON:0002217!1.09e-10!3;UBERON:0007616!1.09e-10!3;UBERON:0000060!1.53e-10!12;UBERON:0001052!1.70e-08!4;UBERON:0001242!1.70e-08!4;UBERON:0001262!1.70e-08!4;UBERON:0004786!1.70e-08!4;UBERON:0004808!1.70e-08!4;UBERON:0001277!1.70e-08!4;UBERON:0003350!4.79e-07!5;UBERON:0004907!4.79e-07!5;UBERON:0004802!5.66e-07!19;UBERON:0000115!5.66e-07!19;UBERON:0004905!6.39e-07!5;UBERON:0000982!6.39e-07!5;UBERON:0004770!6.39e-07!5 | |ontology_enrichment_uberon=UBERON:0001764!1.78e-29!1;UBERON:0001825!1.78e-29!1;UBERON:0004903!1.33e-15!2;UBERON:0002173!1.33e-15!2;UBERON:0002186!1.33e-15!2;UBERON:0004821!7.42e-11!3;UBERON:0003215!7.42e-11!3;UBERON:0002299!7.42e-11!3;UBERON:0006524!7.42e-11!3;UBERON:0008874!7.42e-11!3;UBERON:0002169!7.42e-11!3;UBERON:0004894!7.42e-11!3;UBERON:0006915!1.09e-10!3;UBERON:0002018!1.09e-10!3;UBERON:0002217!1.09e-10!3;UBERON:0007616!1.09e-10!3;UBERON:0000060!1.53e-10!12;UBERON:0001052!1.70e-08!4;UBERON:0001242!1.70e-08!4;UBERON:0001262!1.70e-08!4;UBERON:0004786!1.70e-08!4;UBERON:0004808!1.70e-08!4;UBERON:0001277!1.70e-08!4;UBERON:0003350!4.79e-07!5;UBERON:0004907!4.79e-07!5;UBERON:0004802!5.66e-07!19;UBERON:0000115!5.66e-07!19;UBERON:0004905!6.39e-07!5;UBERON:0000982!6.39e-07!5;UBERON:0004770!6.39e-07!5 | ||
|ontology_enrichment_uberon_v019=UBERON:0004903;4.52e-50;2!UBERON:0002173;4.52e-50;2!UBERON:0002186;4.52e-50;2!UBERON:0004821;5.96e-34;3!UBERON:0007499;5.96e-34;3!UBERON:0003215;5.96e-34;3!UBERON:0010368;5.96e-34;3!UBERON:0009911;5.96e-34;3!UBERON:0002299;5.96e-34;3!UBERON:0006524;5.96e-34;3!UBERON:0008874;5.96e-34;3!UBERON:0002169;5.96e-34;3!UBERON:0004894;5.96e-34;3!UBERON:0001052;5.56e-26;4!UBERON:0001242;5.56e-26;4!UBERON:0001262;5.56e-26;4!UBERON:0004786;5.56e-26;4!UBERON:0004808;5.56e-26;4!UBERON:0001277;5.56e-26;4!UBERON:0009856;7.14e-26;4!UBERON:0004907;4.21e-21;5!UBERON:0000485;1.65e-15;7!UBERON:0003929;1.65e-15;7!UBERON:0000490;1.90e-14;33!UBERON:0003350;9.39e-14;8!UBERON:0001155;2.19e-12;9!UBERON:0000058;3.02e-11;10!UBERON:0000059;2.16e-10;11!UBERON:0005911;3.55e-08;36!UBERON:0007196;5.93e-08;15!UBERON:0001558;5.93e-08;15!UBERON:0000160;7.18e-07;17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004903,4.52e-50,2;UBERON:0002173,4.52e-50,2;UBERON:0002186,4.52e-50,2;UBERON:0004821,5.96e-34,3;UBERON:0003215,5.96e-34,3;UBERON:0010368,5.96e-34,3;UBERON:0009911,5.96e-34,3;UBERON:0002299,5.96e-34,3;UBERON:0006524,5.96e-34,3;UBERON:0008874,5.96e-34,3;UBERON:0002169,5.96e-34,3;UBERON:0004894,5.96e-34,3;UBERON:0001052,5.56e-26,4;UBERON:0001242,5.56e-26,4;UBERON:0001262,5.56e-26,4;UBERON:0004786,5.56e-26,4;UBERON:0004808,5.56e-26,4;UBERON:0001277,5.56e-26,4;UBERON:0004907,4.21e-21,5;UBERON:0003350,9.39e-14,8;UBERON:0001155,2.19e-12,9;UBERON:0000485,2.19e-12,9;UBERON:0000059,2.16e-10,11;UBERON:0007196,5.93e-08,15;UBERON:0001558,5.93e-08,15;UBERON:0000160,7.18e-07,17 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.13654458722565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,21.8552526139512,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.262887354279314,0,0,0,0,0,0,0,0,0,0.0787831823072236,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.314108192500469,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.5647304101948,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157771562193185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.13654458722565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,21.8552526139512,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.262887354279314,0,0,0,0,0,0,0,0,0,0.0787831823072236,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.314108192500469,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.5647304101948,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157771562193185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr1:119837700..119837705,+ | |short_description=p@chr1:119837700..119837705,+ | ||
}} | }} |
Latest revision as of 20:18, 27 July 2015
Short description: | p@chr1:119837700..119837705, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:119837700..119837705, + |
Coexpression cluster: | C86_colon_carcinoid_small_neuroectodermal_giant_large_neuroepithelioma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of large intestine | 2.74e-50 | 2 |
pneumocyte | 5.96e-34 | 3 |
intestinal epithelial cell | 5.56e-26 | 4 |
epithelial cell of tracheobronchial tree | 2.45e-12 | 9 |
epithelial cell of lower respiratory tract | 2.45e-12 | 9 |
endo-epithelial cell | 1.07e-10 | 42 |
respiratory epithelial cell | 5.70e-09 | 13 |
endodermal cell | 4.33e-08 | 58 |
Ontology term | p-value | n |
---|---|---|
bronchoalveolar duct junction | 4.52e-50 | 2 |
alveolar duct | 4.52e-50 | 2 |
bronchiole | 4.52e-50 | 2 |
pulmonary alveolus epithelium | 5.96e-34 | 3 |
alveolus | 5.96e-34 | 3 |
pulmonary lobule | 5.96e-34 | 3 |
lobule | 5.96e-34 | 3 |
alveolus of lung | 5.96e-34 | 3 |
alveolar system | 5.96e-34 | 3 |
pulmonary acinus | 5.96e-34 | 3 |
alveolar sac | 5.96e-34 | 3 |
alveolar wall | 5.96e-34 | 3 |
rectum | 5.56e-26 | 4 |
intestinal mucosa | 5.56e-26 | 4 |
wall of intestine | 5.56e-26 | 4 |
gastrointestinal system mucosa | 5.56e-26 | 4 |
gastrointestinal system epithelium | 5.56e-26 | 4 |
intestinal epithelium | 5.56e-26 | 4 |
lower digestive tract | 4.21e-21 | 5 |
epithelium of mucosa | 9.39e-14 | 8 |
colon | 2.19e-12 | 9 |
simple columnar epithelium | 2.19e-12 | 9 |
large intestine | 2.16e-10 | 11 |
tracheobronchial tree | 5.93e-08 | 15 |
lower respiratory tract | 5.93e-08 | 15 |
intestine | 7.18e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
lung adenocarcinoma | 4.52e-50 | 2 |
non-small cell lung carcinoma | 5.15e-21 | 5 |
bronchus cancer | 1.91e-15 | 7 |
bronchogenic carcinoma | 1.91e-15 | 7 |
lung carcinoma | 2.45e-12 | 9 |
gastrointestinal system cancer | 1.86e-08 | 14 |
lung cancer | 5.93e-08 | 15 |
respiratory system cancer | 1.54e-07 | 16 |