FFCP PHASE1:Hg19::chr19:56048494..56048519,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=646643 | |EntrezGene=646643 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=34416 | |HGNC=34416 | ||
|TSSclassifier=strong | |||
|UniProt=P0C263 | |UniProt=P0C263 | ||
|association_with_transcript=-38bp_to_ENST00000413299_5end | |association_with_transcript=-38bp_to_ENST00000413299_5end | ||
|cluster_id=chr19:56048494..56048519,- | |||
|coexpression_cluster_id=C38 | |||
|description=CAGE_peak_2_at_SBK2_5end | |description=CAGE_peak_2_at_SBK2_5end | ||
|id=chr19:56048494..56048519,- | |id=chr19:56048494..56048519,- | ||
|ontology_enrichment_celltype=CL:0002322!6.95e-11!5;CL:0000188!4.20e-07!9;CL:1000507!6.25e-07!12;CL:1000494!6.25e-07!12 | |ontology_enrichment_celltype=CL:0002322!6.95e-11!5;CL:0000188!4.20e-07!9;CL:1000507!6.25e-07!12;CL:1000494!6.25e-07!12 | ||
|ontology_enrichment_celltype_v019=CL:0002322;1.21e-26;5!CL:0000669;1.45e-12;4!CL:0000650;5.16e-12;2!CL:1000500;5.16e-12;2!CL:1000618;5.16e-12;2!CL:1001318;5.16e-12;2!CL:0002173;5.16e-12;2!CL:0002321;1.02e-08;15!CL:0000540;2.91e-08;6!CL:0000404;2.91e-08;6!CL:0000039;3.84e-07;7!CL:0000586;3.84e-07;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,1.15e-26,5;CL:0000669,1.88e-12,4;CL:0000650,5.75e-12,2;CL:1000500,5.75e-12,2;CL:1000618,5.75e-12,2;CL:1001318,5.75e-12,2;CL:0002173,5.75e-12,2;CL:0000540,2.74e-08,6;CL:0000031,2.74e-08,6;CL:0000404,2.74e-08,6;CL:0000039,3.41e-07,7;CL:0000586,3.41e-07,7 | |||
|ontology_enrichment_development_v019=UBERON:0009117;1.53e-08;10!UBERON:0005564;1.53e-08;10!CL:0000031;2.91e-08;6!UBERON:0010227;6.77e-07;1 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3095;5.07e-08;22!DOID:2994;5.07e-08;22!DOID:3371;5.57e-07;1!DOID:4549;5.57e-07;1!DOID:5861;5.57e-07;1!DOID:6496;5.57e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,5.25e-08,22;DOID:2994,5.25e-08,22;DOID:3371,5.58e-07,1;DOID:4549,5.58e-07,1;DOID:5861,5.58e-07,1;DOID:6496,5.58e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0009773!6.25e-07!12;UBERON:0001231!6.25e-07!12;UBERON:0004810!6.25e-07!12 | |||
|ontology_enrichment_uberon_v019=UBERON:0003567;5.16e-12;2!UBERON:0003838;5.16e-12;2!UBERON:0003586;5.16e-12;2!UBERON:0005169;5.16e-12;2!UBERON:0002321;5.16e-12;2!UBERON:0005215;5.16e-12;2!UBERON:0002303;5.16e-12;2!UBERON:0002319;5.16e-12;2!UBERON:0002079;6.77e-07;1!UBERON:0002135;6.77e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003567,5.75e-12,2;UBERON:0003838,5.75e-12,2;UBERON:0003586,5.75e-12,2;UBERON:0005169,5.75e-12,2;UBERON:0002321,5.75e-12,2;UBERON:0005215,5.75e-12,2;UBERON:0002303,5.75e-12,2;UBERON:0002319,5.75e-12,2;UBERON:0002079,6.59e-07,1;UBERON:0002135,6.96e-07,1 | |||
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| ||
|short_description=p2@SBK2 | |short_description=p2@SBK2 | ||
}} | }} |
Latest revision as of 02:26, 20 September 2015
Short description: | p2@SBK2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SBK2_5end |
Coexpression cluster: | C38_extraskeletal_rhabdomyosarcoma_adrenal_rectal_mesothelioma_lung_Wilms |
Association with transcript: | -38bp_to_ENST00000413299_5end |
EntrezGene: | SBK2 |
HGNC: | 34416 |
UniProt: | P0C263 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 1.15e-26 | 5 |
pericyte cell | 1.88e-12 | 4 |
mesangial cell | 5.75e-12 | 2 |
kidney interstitial cell | 5.75e-12 | 2 |
juxtaglomerular complex cell | 5.75e-12 | 2 |
renal interstitial pericyte | 5.75e-12 | 2 |
extraglomerular mesangial cell | 5.75e-12 | 2 |
neuron | 2.74e-08 | 6 |
neuroblast | 2.74e-08 | 6 |
electrically signaling cell | 2.74e-08 | 6 |
germ line cell | 3.41e-07 | 7 |
germ cell | 3.41e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
abdomen connective tissue | 5.75e-12 | 2 |
abdominal segment connective tissue | 5.75e-12 | 2 |
trunk connective tissue | 5.75e-12 | 2 |
interstitial tissue | 5.75e-12 | 2 |
extraglomerular mesangium | 5.75e-12 | 2 |
kidney interstitium | 5.75e-12 | 2 |
juxtaglomerular apparatus | 5.75e-12 | 2 |
mesangium | 5.75e-12 | 2 |
left cardiac atrium | 6.59e-07 | 1 |
mitral valve | 6.96e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 5.25e-08 | 22 |
germ cell cancer | 5.25e-08 | 22 |
chondrosarcoma | 5.58e-07 | 1 |
extraosseous chondrosarcoma | 5.58e-07 | 1 |
myxoid chondrosarcoma | 5.58e-07 | 1 |
extraskeletal myxoid chondrosarcoma | 5.58e-07 | 1 |