FFCP PHASE1:Hg19::chr2:238323047..238323052,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1293 | |EntrezGene=1293 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2213 | |HGNC=2213 | ||
|TSSclassifier=strong | |||
|UniProt=P12111 | |UniProt=P12111 | ||
|association_with_transcript=-29bp_to_ENST00000295550_5end | |association_with_transcript=-29bp_to_ENST00000295550_5end | ||
|cluster_id=chr2:238323047..238323052,- | |||
|description=CAGE_peak_14_at_COL6A3_5end | |description=CAGE_peak_14_at_COL6A3_5end | ||
|id=chr2:238323047..238323052,- | |id=chr2:238323047..238323052,- | ||
|ontology_enrichment_celltype=CL:0000055!5.40e-30!180;CL:0000057!4.13e-27!75;CL:0002620!1.09e-14!23;CL:0000048!3.50e-11!430;CL:0000723!1.90e-10!436;CL:0000183!4.50e-10!59;CL:0000680!5.68e-10!57;CL:0000056!5.68e-10!57;CL:0000355!5.68e-10!57;CL:0000187!6.64e-10!54;CL:0000034!1.63e-09!444;CL:0000393!2.23e-08!60;CL:0000211!2.23e-08!60 | |ontology_enrichment_celltype=CL:0000055!5.40e-30!180;CL:0000057!4.13e-27!75;CL:0002620!1.09e-14!23;CL:0000048!3.50e-11!430;CL:0000723!1.90e-10!436;CL:0000183!4.50e-10!59;CL:0000680!5.68e-10!57;CL:0000056!5.68e-10!57;CL:0000355!5.68e-10!57;CL:0000187!6.64e-10!54;CL:0000034!1.63e-09!444;CL:0000393!2.23e-08!60;CL:0000211!2.23e-08!60 | ||
|ontology_enrichment_celltype_v019=CL:0002620;5.79e-10;23!CL:0002504;3.71e-08;3!CL:1000279;3.71e-08;3!CL:1000280;3.71e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.74e-12,76;CL:0000048,4.69e-10,427;CL:0002620,6.28e-10,23;CL:0000723,1.04e-09,433;CL:0000034,2.89e-09,441;CL:0002504,4.61e-08,3;CL:1000279,4.61e-08,3;CL:1000280,4.61e-08,3;CL:0000187,4.88e-07,55 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!3.59e-09!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;3.00e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,5.68e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!2.79e-14!83;UBERON:0002329!2.79e-14!83;UBERON:0003077!2.79e-14!83;UBERON:0003059!2.79e-14!83;UBERON:0007282!2.79e-14!83;UBERON:0009618!2.79e-14!83;UBERON:0007285!2.79e-14!83;UBERON:0004290!4.92e-13!70;UBERON:0002199!1.41e-11!45;UBERON:0002416!1.41e-11!45;UBERON:0002097!4.04e-11!40;UBERON:0002385!7.30e-11!63;UBERON:0001015!7.30e-11!63;UBERON:0000383!7.30e-11!63;UBERON:0003102!9.25e-11!95;UBERON:0001134!5.13e-10!61;UBERON:0002036!5.13e-10!61;UBERON:0003082!5.13e-10!61;UBERON:0005256!9.82e-10!143;UBERON:0000486!1.15e-09!82;UBERON:0002100!9.68e-09!216;UBERON:0007100!2.95e-07!27;UBERON:0002384!6.26e-07!375 | |||
|ontology_enrichment_uberon_v019=UBERON:0002385;2.33e-09;31!UBERON:0001015;2.33e-09;31!UBERON:0000383;2.33e-09;31!UBERON:0002097;3.25e-08;41!UBERON:0001135;1.26e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002097,1.29e-09,41;UBERON:0002199,1.53e-09,46;UBERON:0002416,1.53e-09,46;UBERON:0001135,9.25e-08,15;UBERON:0005256,1.27e-07,122;UBERON:0002385,1.81e-07,64;UBERON:0001015,1.81e-07,64;UBERON:0000383,1.81e-07,64;UBERON:0002329,2.34e-07,71;UBERON:0003059,2.34e-07,71;UBERON:0007282,2.34e-07,71;UBERON:0004290,2.34e-07,71;UBERON:0009618,2.34e-07,71;UBERON:0003102,3.01e-07,99;UBERON:0003077,3.37e-07,72;UBERON:0007285,3.37e-07,72;UBERON:0007524,4.80e-07,73;UBERON:0001134,8.86e-07,62;UBERON:0002036,8.86e-07,62;UBERON:0003082,8.86e-07,62 | |||
|phase1_expression=1.09007027562334,1.71280419112787,0.986680828671798,1.0007329835313,1.34088328328186,0,0,0,0.261185628199839,0.491467873003018,0,0.436882744260345,0.263766978228454,0.618831764800233,0.662794751455832,0,0.602694528023977,2.19093027116212,1.46379839637152,0,0,0.313454721478088,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.255725123687061,1.80719576192283,0,0.579386075843295,0.795285947051099,1.94653948121054,0,0,0,0.327447688744282,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.47880366186723,0.506522046658319,0.529636723252875,2.86836620748814,0.709336764396714,0.560677600142307,1.06748995729705,0.49333509683432,0.622422070799533,0.404132016209064,0.490385709340376,1.21085942115945,1.15235184896,0.70296429550139,0.936480230490962,0.570471821544449,0.298897361103602,0.587172493218824,0.161872944368132,0.280901613404497,0.204154171254893,0.61417158655884,0.723280468230358,0,0,1.82032272387605,0,0.673344455816265,0.250237039743928,0.554128230968366,0.877955241761676,0,0.300476117813194,0.113432183160021,2.15267562826634,0.640672166455702,0.635795703478686,2.70081986475962,1.03052529238439,2.57640540045629,0.744467425326359,2.86919764810153,1.46155507741798,3.78650661366172,1.65689817556139,0.323292113637624,2.13005755509969,1.0075209822764,0.847802961552438,0,0,0,0,0,0,0,0,0,0,4.5026865673502,1.38134921352481,0.928735856063958,0,0,0,0,0,0,0,0,0,0,0,1.40241773803446,1.2347220339942,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0,2.07986957055916,0,0,0.352226082707465,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0,0,0.126995788584338,0,0,0,0.205654985406647,0,0,0.897048674762886,0.43596006883328,0.5867062865676,0.646358578788889,0,0,0.26593811658487,2.08014873822732,0.514414748524284,0,1.0656887160644,1.57275793023962,2.17048642156577,0.823240336780769,0.65147236858747,0.355391948742546,0,0,0,0,0,0,0,0.239624855491583,0,0,0.144781306667579,0.205476322550383,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24538298343828,0,0.271265023699736,0.831883446123229,1.07057393278297,0.630809660135739,0.585707074963566,0,0,0,1.32845119707087,0.184369168541703,0.955719759148911,0.391602314925481,0.343143423810856,0,0,0,0,0,0,0,1.99500565274481,4.49056151092918,0.640695746278505,0.511707249066704,0.965123526861645,0,1.3878872442239,0.710246901252508,0.164254312027618,1.55776328755086,1.16210378459959,0,0,0,1.03333003348146,1.27463817604702,0.524497659837696,0,0,0,0,0,0,0,0,0,0.270946437543853,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0.574265537996172,0,1.6068392984416,0.386682873168488,1.3864375540318,1.38153307253517,0.275673144969061,1.39646318328756,1.30515024522806,0.340906509664404,0.356128142586949,0,0,0,0,0,2.83331112147576,0,0,0,0,0.18532421910392,0.143124886741991,0,0.316379424718726,0.190630193923825,0,0,0.636406495851874,0.78494864019923,1.07923474549989,1.37268514868027,1.41374882814824,0,0,0,1.46290121726877,0.731140468893853,0,2.59349831675173,1.41405431953713,1.13008116620243,0.551365343546124,0,0,0,1.31178950409327,0.811641507850816,0,0.845086807596724,0.573645408816206,0.294747123039363,0,0.354761064070598,0.422215270595328,0,0.379473173765715,0.699869440489966,0,0,0,0.564862804660675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0,0,0,0,0,0,0,0,0,0.398495976502139,0,0,0,0,1.24415835064723,0,0,0,0.295930216910801,0,0,0,0,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.692552326534174,0,0,0.269272933229316,0,0,0.457987967009312,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.619202951523374,1.22206028986725,0,0,0,0,0,0,0,0,0.242780379534093,0.394584402849391,0,0,0.189559738885464,0,0,0,0,0.313932918407225,0,0,0,0,0,0,0.52418000472609,0.687944129886466,0,0,0,0.387956065953678,0,0.225980740780532,0.548167698587004,0,0,0,0,0.426905989478705,0,0,0,0,0,0,0,0,0,2.03996435272644,0,0,0,0,0,0,0.279282401272254,0.458320848023367,1.43574604915363,0.199679000498991,0.429226048136571,0.223171457441873,0.134366944973453,3.24269895188163,0,0,0,0,0,0.0846733320657845,0,0,0.160753148465019,0,0,0,0,0,0,0.157611414598396,0.209818352539992,0,0,0,0,0,0,0,0,0.326587360109409,0,0,0.851940108927109,0,0,0,0,0,0,0,0.106787412567695,0.471612915298998,0,0,0,0,0,0,0,0.306345576763462,0.327872630709804,0,0,0,0,0,0,0,0,0,0,0,1.17632909849086,0,0,0.298509605773748,0.934853239388898,0.554805861502613,0.568209015825267,0.754703705257725,0,0.915360273587694,1.51230923763239,0.932623203496683,0.443565449968902,0.796483835818512,1.34940933649081,0.621051827505038,1.24411862352257,2.65841714557995,1.04349012362347,0.751288044986092,0.380805212168795,2.03435366602331,1.27294061441792,0.214821114084977,0.928067519756987,1.19428766609585,0,0.686791410365586,0,0,0,0,0,0,2.54674721756217,0,0,0,0,0.176689145945881,0,0,0,0,0,0,0,0,0,0.982829546539238,0,0,0,0,0,0,0.552317850755522,0,0,0,0,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| ||
|short_description=p14@COL6A3 | |short_description=p14@COL6A3 | ||
}} | }} |
Latest revision as of 03:51, 16 September 2015
Short description: | p14@COL6A3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_14_at_COL6A3_5end |
Coexpression cluster: | NA |
Association with transcript: | -29bp_to_ENST00000295550_5end |
EntrezGene: | COL6A3 |
HGNC: | 2213 |
UniProt: | P12111 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.74e-12 | 76 |
multi fate stem cell | 4.69e-10 | 427 |
skin fibroblast | 6.28e-10 | 23 |
somatic stem cell | 1.04e-09 | 433 |
stem cell | 2.89e-09 | 441 |
enteric smooth muscle cell | 4.61e-08 | 3 |
smooth muscle cell of large intestine | 4.61e-08 | 3 |
smooth muscle cell of colon | 4.61e-08 | 3 |
muscle cell | 4.88e-07 | 55 |
Ontology term | p-value | n |
---|---|---|
skin of body | 1.29e-09 | 41 |
integument | 1.53e-09 | 46 |
integumental system | 1.53e-09 | 46 |
smooth muscle tissue | 9.25e-08 | 15 |
trunk mesenchyme | 1.27e-07 | 122 |
muscle tissue | 1.81e-07 | 64 |
musculature | 1.81e-07 | 64 |
musculature of body | 1.81e-07 | 64 |
somite | 2.34e-07 | 71 |
presomitic mesoderm | 2.34e-07 | 71 |
presumptive segmental plate | 2.34e-07 | 71 |
dermomyotome | 2.34e-07 | 71 |
trunk paraxial mesoderm | 2.34e-07 | 71 |
surface structure | 3.01e-07 | 99 |
paraxial mesoderm | 3.37e-07 | 72 |
presumptive paraxial mesoderm | 3.37e-07 | 72 |
dense mesenchyme tissue | 4.80e-07 | 73 |
skeletal muscle tissue | 8.86e-07 | 62 |
striated muscle tissue | 8.86e-07 | 62 |
myotome | 8.86e-07 | 62 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 5.68e-08 | 14 |