FFCP PHASE1:Hg19::chr2:237683156..237683171,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr2:237683156..237683171,+ | |||
|coexpression_cluster_id=C323 | |||
|description=CAGE_peak_at_chr2:237683156..237683171,+ | |description=CAGE_peak_at_chr2:237683156..237683171,+ | ||
|id=chr2:237683156..237683171,+ | |id=chr2:237683156..237683171,+ | ||
|ontology_enrichment_celltype=CL:0000349!6.87e-25!3;CL:0002577!6.87e-25!3;CL:0002541!2.64e-24!3;CL:0002536!3.87e-17!2;CL:0002537!8.73e-15!5;CL:0000064!5.71e-11!3;CL:0005012!5.71e-11!3;CL:0000067!5.71e-11!3;CL:0002304!5.71e-11!3 | |ontology_enrichment_celltype=CL:0000349!6.87e-25!3;CL:0002577!6.87e-25!3;CL:0002541!2.64e-24!3;CL:0002536!3.87e-17!2;CL:0002537!8.73e-15!5;CL:0000064!5.71e-11!3;CL:0005012!5.71e-11!3;CL:0000067!5.71e-11!3;CL:0002304!5.71e-11!3 | ||
|ontology_enrichment_celltype_v019=CL:0000349;9.27e-104;19!CL:0002577;8.11e-51;3!CL:0002541;1.41e-49;3!CL:0002536;2.18e-34;2!CL:0002537;4.95e-30;5!CL:0000134;8.41e-08;55!CL:0000723;3.25e-07;61 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,9.74e-104,19;CL:0002577,8.11e-51,3;CL:0002541,1.41e-49,3;CL:0002536,2.18e-34,2;CL:0002537,5.20e-30,5 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005631!3.09e-79!14;UBERON:0000158!3.09e-79!14;UBERON:0003124!9.98e-55!7;UBERON:0000478!2.16e-45!24;UBERON:0001987!3.22e-32!4;UBERON:0004340!3.22e-32!4;UBERON:0000305!3.02e-28!7;UBERON:0004871!1.04e-24!8;UBERON:0000476!2.64e-24!3;UBERON:0000920!2.64e-24!3;UBERON:0004923!6.76e-18!57;UBERON:0000995!4.54e-13!21;UBERON:0005795!1.88e-12!22;UBERON:0003975!1.88e-12!22;UBERON:0001778!5.71e-11!3;UBERON:0001775!5.71e-11!3;UBERON:0004175!6.73e-11!25;UBERON:0000488!1.91e-08!4;UBERON:0003134!3.41e-07!37;UBERON:0000474!3.41e-07!37 | |||
|ontology_enrichment_uberon_v019=UBERON:0005631;5.93e-104;10!UBERON:0000158;5.93e-104;10!UBERON:0000478;4.66e-82;24!UBERON:0000305;1.08e-58;7!UBERON:0003124;1.41e-49;3!UBERON:0000920;1.41e-49;3!UBERON:0001987;2.45e-38;4!UBERON:0004923;5.45e-11;55 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,6.53e-141,14;UBERON:0000158,6.53e-141,14;UBERON:0003124,1.50e-84,7;UBERON:0000478,4.85e-82,24;UBERON:0000305,1.14e-58,7;UBERON:0004871,2.22e-51,8;UBERON:0000920,1.41e-49,3;UBERON:0001987,2.45e-38,4;UBERON:0004340,2.45e-38,4;UBERON:0004923,1.81e-29,66;UBERON:0000995,4.79e-13,21;UBERON:0005795,1.81e-12,22;UBERON:0003975,1.81e-12,22;UBERON:0004175,5.21e-11,25;UBERON:0003134,1.59e-07,37;UBERON:0000474,1.59e-07,37;UBERON:0003100,8.20e-07,41 | |||
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|short_description=p@chr2:237683156..237683171,+ | |short_description=p@chr2:237683156..237683171,+ | ||
}} | }} |
Latest revision as of 08:08, 29 July 2015
Short description: | p@chr2:237683156..237683171, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:237683156..237683171, + |
Coexpression cluster: | C323_Placental_Amniotic_neuroblastoma_amniotic_chorionic_hairy_locus |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 9.74e-104 | 19 |
placental epithelial cell | 8.11e-51 | 3 |
chorionic membrane mesenchymal stem cell | 1.41e-49 | 3 |
amniotic epithelial cell | 2.18e-34 | 2 |
amnion mesenchymal stem cell | 5.20e-30 | 5 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 6.53e-141 | 14 |
membranous layer | 6.53e-141 | 14 |
chorion | 1.50e-84 | 7 |
extraembryonic structure | 4.85e-82 | 24 |
amnion | 1.14e-58 | 7 |
somatic layer of lateral plate mesoderm | 2.22e-51 | 8 |
egg chorion | 1.41e-49 | 3 |
placenta | 2.45e-38 | 4 |
allantois | 2.45e-38 | 4 |
organ component layer | 1.81e-29 | 66 |
uterus | 4.79e-13 | 21 |
embryonic uterus | 1.81e-12 | 22 |
internal female genitalia | 1.81e-12 | 22 |
internal genitalia | 5.21e-11 | 25 |
female reproductive organ | 1.59e-07 | 37 |
female reproductive system | 1.59e-07 | 37 |
female organism | 8.20e-07 | 41 |