FFCP PHASE1:Hg19::chr2:228680072..228680092,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6364 | |EntrezGene=6364 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10619 | |HGNC=10619 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000473642_5end | |association_with_transcript=0bp_to_ENST00000473642_5end | ||
|cluster_id=chr2:228680072..228680092,+ | |||
|description=CAGE_peak_3_at_CCL20_5end | |description=CAGE_peak_3_at_CCL20_5end | ||
|id=chr2:228680072..228680092,+ | |id=chr2:228680072..228680092,+ | ||
|ontology_enrichment_celltype=CL:0002564!2.15e-07!3 | |ontology_enrichment_celltype=CL:0002564!2.15e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0002602;7.74e-18;2!CL:0002564;2.85e-12;3!CL:0000342;1.76e-09;1!CL:0002565;1.76e-09;1!CL:0002537;6.62e-08;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002602,4.85e-18,2;CL:0002564,3.57e-12,3;CL:0000342,2.67e-09,1;CL:0002565,2.67e-09,1;CL:0002537,6.51e-08,5 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002242!2.15e-07!3;UBERON:0003068!2.15e-07!3;UBERON:0002328!2.15e-07!3;UBERON:0004880!2.15e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0011135;3.17e-27;5!UBERON:0002216;3.17e-27;5!UBERON:0011134;3.17e-27;5!UBERON:0002209;3.17e-27;5!UBERON:0002213;3.17e-27;5!UBERON:0007844;3.17e-27;5!UBERON:0011138;3.17e-27;5!UBERON:0001130;3.17e-27;5!UBERON:0001066;3.17e-27;5!UBERON:0001468;3.17e-27;5!UBERON:0006444;7.74e-18;2!UBERON:0001995;7.74e-18;2!UBERON:0004715;7.74e-18;2!UBERON:0004905;4.01e-17;8!UBERON:0000982;4.01e-17;8!UBERON:0004770;4.01e-17;8!UBERON:0004765;4.02e-15;26!UBERON:0002242;2.85e-12;3!UBERON:0002418;3.28e-12;3!UBERON:0004755;3.28e-12;3!UBERON:0007195;5.08e-10;1!UBERON:0002506;1.76e-09;1!UBERON:0001769;1.76e-09;1!UBERON:0000075;1.19e-08;16!UBERON:0005631;2.51e-08;10!UBERON:0000158;2.51e-08;10!UBERON:0001434;5.01e-07;36!UBERON:0002371;7.48e-07;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0011135,2.87e-27,5;UBERON:0002216,2.87e-27,5;UBERON:0011134,2.87e-27,5;UBERON:0002209,2.87e-27,5;UBERON:0002213,2.87e-27,5;UBERON:0005856,2.87e-27,5;UBERON:0005866,2.87e-27,5;UBERON:0005863,2.87e-27,5;UBERON:0007844,2.87e-27,5;UBERON:0011138,2.87e-27,5;UBERON:0001130,2.87e-27,5;UBERON:0001066,2.87e-27,5;UBERON:0001468,2.87e-27,5;UBERON:0006444,4.85e-18,2;UBERON:0001995,4.85e-18,2;UBERON:0004715,4.85e-18,2;UBERON:0004905,3.78e-17,8;UBERON:0000982,3.78e-17,8;UBERON:0004770,3.78e-17,8;UBERON:0002418,2.40e-12,3;UBERON:0004755,2.40e-12,3;UBERON:0002242,3.57e-12,3;UBERON:0003068,3.57e-12,3;UBERON:0002328,3.57e-12,3;UBERON:0004880,3.57e-12,3;UBERON:0007195,5.31e-10,1;UBERON:0002506,2.67e-09,1;UBERON:0001769,2.67e-09,1;UBERON:0000075,1.16e-08,16;UBERON:0002204,2.75e-07,167 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0.697801167972428,0.218441372130172,0,5.321953177282,1.98838425436749,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200544447470142,0.217010870715852,0.223915474239924,0,0,0,0,0.242584061187816,0,0,0,0.28769239232215,0,0,0,0,0,0,0,0.224723484445085,0.612167784741805,0.962787081228281,2.55734850319616,0,0,0,0,0,0,0,0,0,0,0,0.632924774881769,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205601498999509,0,0.32592226663359,0,0,0.111410456885174,0,0.221533894583621,0,0,0,0,0,0,0.14828656316206,0,0,0.113309342697566,0.383220493601921,0,0.506039384039006,0,0,0,0,0.127986611154418,0,0,0,0.201606743224732,0,0,2.43806866313962,0,0.255725123687061,0,0,0,0,0,0.0945348171640679,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.379891534993739,0,0,0.354668382198357,0,0,0,0.622422070799533,0,0,0,0.576175924479999,0,0,0,0,0,0,0,0,0,0.103325781175765,0,0,0,0,0,0.125118519871964,0,0,0,0,0.340296549480063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.928735856063958,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0,0,0,0,1.02940686179115,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.358234090811393,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131084345361,0,0.36669142910475,0,0,1.690605505112,0,0,0.514414748524284,1.41849132023278,2.66422179016099,0.857867961948885,0,0,0.977208552881205,0.710783897485092,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0.205476322550383,0,0,0.197030760201927,0,0,0,0,0,0,0,0,0,0,2.33113834266366,2.00068208423871,0.542530047399471,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.328014645699706,1.95227036798582,0.103041011647722,0,0,0,0,0,0,1.23238893691716,0.460511024178389,0.137836572484531,2.0409846524972,0,0.511359764496605,0,0,0,0.127612712494584,0,0,0.31481234683064,0,0,0.532306030317022,0,0,0.143124886741991,0,2.53103539774981,0.38126038784765,1.27948895655667,0.42793898803392,0,0,0.539617372749944,0,1.64937363283961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.07229042003222,0,4.60741053148848,0,0,0,0.988823245360557,0,0,0,0,0,0.123084805461069,0,0,0,0,0,0,4.44547960578548,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.23300811812344,0,0,0,0,0,0,0,0,0,0,0.632994193584081,0,0,0,0,0.176915129006678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.330991955875499,0.313932918407225,0,0.284609546029793,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.360299883542404,0,0,0.0824158583811665,0,0,0,0,0,0,0,0,0.2249738915515,0,0,0,0,0,0,5.1993328406525,0,0,0,1.77987976358325,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,1.10043013569766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151649117541648,0,0,0,0,0,0,0,0,0,0,0,0,0,0.147855149989634,0.159296767163702,0,0,0,0,0,0,0.380805212168795,0,0,0,0,0.398095888698616,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176689145945881,0.578742114812744,0,0,0,0,0,0,0,0,0,0.245772908753719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192687675289379,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.342976018874837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.45051314914126,0,0,0,0,0,0,0,0,0,0,0,0.365753774946808,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.299823467774787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0,0,0.124149428591716,0,0,0,0,0,0.0673520530145875,0,0,0,0.106727345877715,0,0,0,0,0,0,0,0 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| ||
|short_description=p3@CCL20 | |short_description=p3@CCL20 | ||
}} | }} |
Latest revision as of 04:16, 25 September 2015
Short description: | p3@CCL20 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_CCL20_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000473642_5end |
EntrezGene: | CCL20 |
HGNC: | 10619 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
annulus pulposus cell | 4.85e-18 | 2 |
nucleus pulposus cell of intervertebral disc | 3.57e-12 | 3 |
pigment cell (sensu Vertebrata) | 2.67e-09 | 1 |
iris pigment epithelial cell | 2.67e-09 | 1 |
amnion mesenchymal stem cell | 6.51e-08 | 5 |
Ontology term | p-value | n |
---|---|---|
intervertebral cartilage | 2.87e-27 | 5 |
symphysis | 2.87e-27 | 5 |
nonsynovial joint | 2.87e-27 | 5 |
fibrous joint | 2.87e-27 | 5 |
cartilaginous joint | 2.87e-27 | 5 |
developing mesenchymal condensation | 2.87e-27 | 5 |
pre-cartilage condensation | 2.87e-27 | 5 |
cartilaginous condensation | 2.87e-27 | 5 |
cartilage element | 2.87e-27 | 5 |
post-cranial axial skeletal system | 2.87e-27 | 5 |
vertebral column | 2.87e-27 | 5 |
intervertebral disk | 2.87e-27 | 5 |
intervertebral joint | 2.87e-27 | 5 |
annulus fibrosus | 4.85e-18 | 2 |
fibrocartilage | 4.85e-18 | 2 |
annulus fibrosus disci intervertebralis | 4.85e-18 | 2 |
articulation | 3.78e-17 | 8 |
skeletal joint | 3.78e-17 | 8 |
articular system | 3.78e-17 | 8 |
cartilage tissue | 2.40e-12 | 3 |
skeletal tissue | 2.40e-12 | 3 |
nucleus pulposus | 3.57e-12 | 3 |
axial mesoderm | 3.57e-12 | 3 |
notochord | 3.57e-12 | 3 |
chordamesoderm | 3.57e-12 | 3 |
stroma of bone marrow | 5.31e-10 | 1 |
iris epithelium | 2.67e-09 | 1 |
iris | 2.67e-09 | 1 |
subdivision of skeletal system | 1.16e-08 | 16 |
musculoskeletal system | 2.75e-07 | 167 |