FFCP PHASE1:Hg19::chr2:200323414..200323455,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23314 | |EntrezGene=23314 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=21637 | |HGNC=21637 | ||
|TSSclassifier=strong | |||
|UniProt=C9JR56 | |UniProt=C9JR56 | ||
|association_with_transcript=12bp_to_ENST00000443023_5end | |association_with_transcript=12bp_to_ENST00000443023_5end | ||
|cluster_id=chr2:200323414..200323455,- | |||
|description=CAGE_peak_1_at_SATB2_5end | |description=CAGE_peak_1_at_SATB2_5end | ||
|id=chr2:200323414..200323455,- | |id=chr2:200323414..200323455,- | ||
|ontology_enrichment_celltype=CL:0000055!3.08e-19!180;CL:0000057!5.26e-11!75;CL:0002319!4.38e-08!25;CL:0002620!8.83e-08!23 | |ontology_enrichment_celltype=CL:0000055!3.08e-19!180;CL:0000057!5.26e-11!75;CL:0002319!4.38e-08!25;CL:0002620!8.83e-08!23 | ||
|ontology_enrichment_celltype_v019=CL:0002319;1.23e-08;25!CL:0002620;3.27e-08;23!CL:0000095;5.92e-07;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,4.97e-12,76;CL:0002319,9.34e-09,25;CL:0002620,2.02e-08,23;CL:0000095,5.92e-07,17;CL:0000123,5.92e-07,17 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:14566!3.56e-08!239;DOID:162!2.02e-07!235 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:14566,1.36e-07,239;DOID:162,7.93e-07,235 | |||
|ontology_enrichment_uberon=UBERON:0000475!5.14e-21!365;UBERON:0000956!2.52e-13!25;UBERON:0000203!2.52e-13!25;UBERON:0004121!6.52e-13!169;UBERON:0001017!7.51e-13!82;UBERON:0002619!1.46e-12!22;UBERON:0000073!3.07e-12!94;UBERON:0001016!3.07e-12!94;UBERON:0000924!3.35e-12!173;UBERON:0006601!3.35e-12!173;UBERON:0001950!4.49e-12!20;UBERON:0005743!2.38e-11!86;UBERON:0000033!4.40e-11!123;UBERON:0001869!6.61e-11!32;UBERON:0001893!2.51e-10!34;UBERON:0000955!2.63e-10!69;UBERON:0006238!2.63e-10!69;UBERON:0000481!3.19e-10!347;UBERON:0000153!3.22e-10!129;UBERON:0007811!3.22e-10!129;UBERON:0002791!7.70e-10!33;UBERON:0003102!9.03e-10!95;UBERON:0002020!1.07e-09!34;UBERON:0003528!1.07e-09!34;UBERON:0002199!5.14e-08!45;UBERON:0002416!5.14e-08!45;UBERON:0000468!6.19e-08!659;UBERON:0003080!6.34e-08!42;UBERON:0002780!7.08e-08!41;UBERON:0001890!7.08e-08!41;UBERON:0006240!7.08e-08!41;UBERON:0001049!8.40e-08!57;UBERON:0005068!8.40e-08!57;UBERON:0006241!8.40e-08!57;UBERON:0007135!8.40e-08!57;UBERON:0002616!1.67e-07!59;UBERON:0002097!2.26e-07!40;UBERON:0000914!2.47e-07!83;UBERON:0002329!2.47e-07!83;UBERON:0003077!2.47e-07!83;UBERON:0003059!2.47e-07!83;UBERON:0007282!2.47e-07!83;UBERON:0009618!2.47e-07!83;UBERON:0007285!2.47e-07!83;UBERON:0000467!3.21e-07!625;UBERON:0000480!4.99e-07!626;UBERON:0003075!5.98e-07!86;UBERON:0007284!5.98e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0000956;8.16e-15;25!UBERON:0000203;8.16e-15;25!UBERON:0002619;6.61e-14;22!UBERON:0001950;1.93e-13;20!UBERON:0001869;2.84e-10;32!UBERON:0002791;1.82e-09;32!UBERON:0001893;2.78e-09;34!UBERON:0003528;9.17e-09;34!UBERON:0002020;9.17e-09;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000956,8.90e-15,25;UBERON:0000203,8.90e-15,25;UBERON:0002619,6.06e-14,22;UBERON:0001950,2.07e-13,20;UBERON:0001016,2.13e-12,89;UBERON:0001017,1.69e-11,81;UBERON:0001869,2.87e-11,32;UBERON:0004121,5.64e-11,171;UBERON:0000924,5.64e-11,171;UBERON:0006601,5.64e-11,171;UBERON:0002791,1.73e-10,32;UBERON:0001893,2.57e-10,34;UBERON:0003528,1.23e-09,34;UBERON:0002020,1.23e-09,34;UBERON:0002199,2.86e-09,46;UBERON:0002416,2.86e-09,46;UBERON:0003102,5.38e-09,99;UBERON:0000955,7.72e-09,68;UBERON:0006238,7.72e-09,68;UBERON:0002097,1.46e-08,41 | |||
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|phase1_expression=1.45342703416445,1.71280419112787,1.55049844505568,1.0007329835313,1.78784437770915,0.872338524100369,2.53299878168311,5.68547886084148,1.04474251279935,0.245733936501509,0,0,0,0.618831764800233,0.662794751455832,2.6893005858071,3.01347264011988,0.730310090387373,5.85519358548608,6.27917396191618,9.38403179723564,8.46327747990837,4.00730381983479,7.25434452886286,5.52387614217132,0.152826811495903,0,0.157421562627358,0,0,0,0,0,0.369754010166788,0,0,0,0,0,0,0.223915474239924,0,0,0,0,0,0,0,0,0,0,0,0.344745680736619,0,0,0.188242339542605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.294605907474837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267440195783507,0,0,0.670700859703636,0.255725123687061,0,0.50133791063589,1.30361867064741,0,0.486634870302636,1.41802225746102,1.10864698731282,2.19586964232815,3.92937226493138,1.09288586487763,1.11235332835329,0,0,0.398873881556595,0,0,0,0.596287222100115,0,0.347140501607594,0.56530794192401,0.838998872419812,0.275118041940067,0.417989933073621,0,0.35576626268671,1.00416183829401,0,0,0.24406205754817,0,0.81014194788176,0,0.22452937262617,0,0,0,0.183201743930407,0,0,0,1.49091585508596,3.41902381494365,6.75286822147416,7.17091551872034,5.32002573297536,0,1.06748995729705,1.2333377420858,0.933633106199299,0.808264032418128,0,1.36221684880438,2.30470369792,5.15507150034353,12.1742429963825,5.70471821544449,6.42629326372745,3.87533845524424,4.04682360920329,6.32028630160118,7.96201267894084,7.61572767332961,8.6793656187643,24.9480600029231,28.9302307255912,3.64064544775211,4.31170885089743,7.74346124188705,14.7639853448918,20.2256804303454,43.0198068463221,7.66219489497549,28.0945170155336,0.113432183160021,9.14887142013196,5.12537733164562,2.96704661623387,4.80145753735044,4.53431128649131,7.47157566132325,6.32797311527405,7.08860595413318,4.38466523225394,4.79624171063818,4.78659472939957,2.90962902273861,7.81021103536552,5.33986120606493,1.69560592310488,0,0.272746120590835,0,0.487894824518382,0.397589304964456,1.16193942869518,0.518305275076852,0.252320850875628,0,12.5159625863853,1.28648187638577,4.14404764057442,7.89425477654364,6.49691533502627,0.591534000199219,0.505754070234305,0.482022059766964,0.330881918197182,1.30727666455444,0.474541238222193,0,0,0,0.738155454624648,1.40241773803446,0,0,0,0,0,0,0.614942192715568,1.02940686179115,0.219500570817251,0,0.100528972411631,0.185176890317059,6.84197441151682,1.03993478527958,1.44331342025273,1.04337364477569,2.11335649624479,0.577465791044295,0,0.380508304469197,2.37061319387782,6.00940313466411,0,0,0,0,0.503946384596579,0.283550194484773,1.43293636324557,1.16253575405585,0.766765358330422,20.6918559916296,0.704387472105808,0,0.288239906833923,0,0.317489471460845,0,1.17217447210047,0,0.308482478109971,0,0,1.34557301214433,0.43596006883328,0.8800594298514,0.387815147273333,10.7296933755565,1.690605505112,6.38251479803689,6.24044621468197,5.91576960802927,4.25547396069835,5.06202140130589,0.142977993658148,0,0,0.977208552881205,0.355391948742546,0,0,0,0.199945982364114,0,0,0,9.82461907515489,12.6348129417525,18.5427976552934,3.61953266668948,4.72595541865882,6.80431660311603,0,0,0,0.641715181398742,4.06551398755941,18.219579540067,8.50617694055465,7.87326447071439,9.56908127479745,0,0,0.414415513436035,1.10422342547226,3.00102312635806,3.25518028439683,1.66376689224646,2.14114786556594,1.41932173530541,3.63138386477411,3.31040709700491,2.27407504055985,3.10419213877515,10.627609576567,5.8998133933345,5.99496939829772,2.54541504701563,3.43143423810856,0,0,0.106727557803444,0,0,0,1.48864684691266,3.83654933220156,2.80660094433074,0.896974044789907,2.55853624533352,2.0911009748669,0,5.08891989548763,4.08391968220192,6.3237910130633,6.75030757938707,3.25389059687886,1.20859449591622,1.80455823272956,0.552485933615378,1.03333003348146,1.0925470080403,3.01586154406675,0.902399225814824,0.539107359730903,0.784349769176855,5.84556898613043,2.00548094896464,0,0,1.29549549661284,0,0.541892875087706,0,1.52925763827023,0.831076008928724,1.56712328305525,0,0,0.512900250232778,0,0,0.721287081534056,27.6539783751397,26.238020974747,1.72279661398852,0,3.21367859688319,3.86682873168488,2.00263202249038,1.84204409671355,3.44591431211326,2.90034661144339,3.48040065394148,3.49429172406014,2.67096106940212,0,0,2.55225424989168,0.30347334256665,3.253918845081,5.35180989612088,4.8792608911242,3.08033580176089,2.66153015158511,3.47973196830029,2.59453906745488,1.43124886741991,1.86079184679834,0.316379424718726,1.5250415513906,2.303080121802,5.13526785640705,6.68226820644467,0.78494864019923,0.719489830333259,0.823611089208164,0.824686816419805,1.81964233415984,3.17020642346017,4.21258456238981,0.975267478179181,5.84912375115083,3.16950440270266,2.72999822815972,1.69686518344455,6.78048699721457,4.41092274836899,1.99031692572366,2.63070531152258,1.15755106853338,1.31178950409327,1.62328301570163,1.54911749049875,0.845086807596724,0.860468113224309,0.5894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| ||
|short_description=p1@SATB2 | |short_description=p1@SATB2 | ||
}} | }} |
Latest revision as of 09:20, 19 September 2015
Short description: | p1@SATB2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SATB2_5end |
Coexpression cluster: | NA |
Association with transcript: | 12bp_to_ENST00000443023_5end |
EntrezGene: | SATB2 |
HGNC: | 21637 |
UniProt: | C9JR56 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 4.97e-12 | 76 |
neural cell | 9.34e-09 | 25 |
skin fibroblast | 2.02e-08 | 23 |
neuron associated cell | 5.92e-07 | 17 |
neuron associated cell (sensu Vertebrata) | 5.92e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
cerebral cortex | 8.90e-15 | 25 |
pallium | 8.90e-15 | 25 |
regional part of cerebral cortex | 6.06e-14 | 22 |
neocortex | 2.07e-13 | 20 |
nervous system | 2.13e-12 | 89 |
central nervous system | 1.69e-11 | 81 |
cerebral hemisphere | 2.87e-11 | 32 |
ectoderm-derived structure | 5.64e-11 | 171 |
ectoderm | 5.64e-11 | 171 |
presumptive ectoderm | 5.64e-11 | 171 |
regional part of telencephalon | 1.73e-10 | 32 |
telencephalon | 2.57e-10 | 34 |
brain grey matter | 1.23e-09 | 34 |
gray matter | 1.23e-09 | 34 |
integument | 2.86e-09 | 46 |
integumental system | 2.86e-09 | 46 |
surface structure | 5.38e-09 | 99 |
brain | 7.72e-09 | 68 |
future brain | 7.72e-09 | 68 |
skin of body | 1.46e-08 | 41 |
Ontology term | p-value | n |
---|---|---|
disease of cellular proliferation | 1.36e-07 | 239 |
cancer | 7.93e-07 | 235 |