FFCP PHASE1:Hg19::chr2:197791602..197791620,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=80055 | |EntrezGene=80055 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25712 | |HGNC=25712 | ||
|TSSclassifier=strong | |||
|UniProt=A6NI33 | |UniProt=A6NI33 | ||
|association_with_transcript=-133bp_to_ENST00000374738_5end | |association_with_transcript=-133bp_to_ENST00000374738_5end | ||
|cluster_id=chr2:197791602..197791620,- | |||
|coexpression_cluster_id=C4166 | |||
|description=CAGE_peak_5_at_PGAP1_5end | |description=CAGE_peak_5_at_PGAP1_5end | ||
|id=chr2:197791602..197791620,- | |id=chr2:197791602..197791620,- | ||
|ontology_enrichment_celltype=CL:0002319!7.20e-07!25 | |ontology_enrichment_celltype=CL:0002319!7.20e-07!25 | ||
|ontology_enrichment_celltype_v019=CL:0000333;2.58e-12;5!CL:0002319;4.56e-10;25!CL:0000047;2.75e-09;2!CL:0002321;2.29e-08;15!CL:0000540;9.60e-07;6!CL:0000404;9.60e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,8.87e-13,8;CL:0000133,1.37e-10,59;CL:0002319,4.53e-10,25;CL:0000221,3.80e-08,72 | |||
|ontology_enrichment_development_v019=CL:0000031;9.60e-07;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:171;6.24e-18;10!DOID:169;2.84e-10;6!DOID:3095;1.34e-07;22!DOID:2994;1.34e-07;22 | |||
|ontology_enrichment_disease_v019_2=DOID:171,6.38e-18,10;DOID:169,2.92e-10,6;DOID:3095,1.35e-07,22;DOID:2994,1.35e-07,22 | |||
|ontology_enrichment_uberon=UBERON:0000073!4.57e-20!94;UBERON:0001016!4.57e-20!94;UBERON:0001017!3.01e-18!82;UBERON:0005743!1.44e-17!86;UBERON:0000924!2.07e-15!173;UBERON:0006601!2.07e-15!173;UBERON:0002346!5.38e-15!90;UBERON:0004121!2.92e-14!169;UBERON:0001049!4.74e-14!57;UBERON:0005068!4.74e-14!57;UBERON:0006241!4.74e-14!57;UBERON:0007135!4.74e-14!57;UBERON:0003075!1.04e-13!86;UBERON:0007284!1.04e-13!86;UBERON:0000955!1.17e-12!69;UBERON:0006238!1.17e-12!69;UBERON:0002780!2.92e-12!41;UBERON:0001890!2.92e-12!41;UBERON:0006240!2.92e-12!41;UBERON:0002020!3.00e-12!34;UBERON:0003528!3.00e-12!34;UBERON:0002616!4.52e-12!59;UBERON:0001893!6.30e-12!34;UBERON:0002791!1.07e-11!33;UBERON:0003080!1.17e-11!42;UBERON:0001869!3.17e-11!32;UBERON:0000956!5.47e-10!25;UBERON:0000203!5.47e-10!25;UBERON:0003056!1.15e-09!61;UBERON:0000153!5.46e-09!129;UBERON:0007811!5.46e-09!129;UBERON:0000033!2.02e-08!123;UBERON:0002619!4.21e-08!22;UBERON:0001950!6.31e-07!20;UBERON:0000922!6.86e-07!612;UBERON:0007023!9.41e-07!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0000013;2.58e-12;5!UBERON:0002410;2.58e-12;5!UBERON:0000349;8.12e-12;5!UBERON:0002791;1.95e-11;32!UBERON:0001869;5.87e-11;32!UBERON:0000010;2.17e-10;8!UBERON:0003528;2.49e-10;34!UBERON:0002020;2.49e-10;34!UBERON:0002420;4.08e-10;9!UBERON:0007245;4.08e-10;9!UBERON:0010009;4.08e-10;9!UBERON:0010011;4.08e-10;9!UBERON:0000454;4.08e-10;9!UBERON:0001893;1.78e-09;34!UBERON:0002346;2.00e-09;4!UBERON:0000923;2.00e-09;4!UBERON:0010316;2.00e-09;4!UBERON:0005291;2.00e-09;4!UBERON:0000369;4.73e-09;4!UBERON:0002435;4.73e-09;4!UBERON:0000204;4.73e-09;4!UBERON:0003714;1.56e-08;2!UBERON:0001016;1.77e-08;83!UBERON:0001876;3.24e-08;2!UBERON:0000956;4.43e-08;25!UBERON:0000203;4.43e-08;25!UBERON:0002780;6.26e-08;41!UBERON:0001890;6.26e-08;41!UBERON:0002050;1.29e-07;5!UBERON:0005423;1.29e-07;5!UBERON:0000922;2.52e-07;49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,5.88e-20,89;UBERON:0004121,5.21e-16,171;UBERON:0000924,5.21e-16,171;UBERON:0006601,5.21e-16,171;UBERON:0001017,9.93e-14,81;UBERON:0000013,2.68e-12,5;UBERON:0002410,2.68e-12,5;UBERON:0000349,4.69e-12,5;UBERON:0002791,9.21e-12,32;UBERON:0001869,9.21e-12,32;UBERON:0003528,5.85e-11,34;UBERON:0002020,5.85e-11,34;UBERON:0001893,5.85e-11,34;UBERON:0000010,2.20e-10,8;UBERON:0002420,2.59e-10,9;UBERON:0007245,2.59e-10,9;UBERON:0010009,2.59e-10,9;UBERON:0010011,2.59e-10,9;UBERON:0000454,2.59e-10,9;UBERON:0000369,3.03e-09,4;UBERON:0002435,3.03e-09,4;UBERON:0000204,3.03e-09,4;UBERON:0010082,3.03e-09,4;UBERON:0002780,9.27e-09,41;UBERON:0001890,9.27e-09,41;UBERON:0003080,9.27e-09,41;UBERON:0006240,9.27e-09,41;UBERON:0000955,9.29e-09,68;UBERON:0006238,9.29e-09,68;UBERON:0002346,1.09e-08,86;UBERON:0003714,2.16e-08,2;UBERON:0001876,2.51e-08,2;UBERON:0000956,3.75e-08,25;UBERON:0000203,3.75e-08,25;UBERON:0000073,1.31e-07,53;UBERON:0002616,1.31e-07,53;UBERON:0011216,3.33e-07,223;UBERON:0001049,4.43e-07,56;UBERON:0005068,4.43e-07,56;UBERON:0006241,4.43e-07,56;UBERON:0007135,4.43e-07,56 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.123766352960047,0,0.672325146451775,0,0,0,0.369363174230364,0.204000691244253,0,1.71741592278634,0.958120975510189,1.25542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200544447470142,0,0,0,0,0,0,0,0,0,0,0,0.256160706529101,0.47296445977717,0,0,0,0,0,0,0,0.320929027076094,0,0.989553900560148,0.398927315243264,1.27867425159808,0.290209238628584,0,0,0,0,0.217188844705117,0,0,0.316462387440884,0,0,0,0,0,0.32145117339416,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0.205601498999509,0,0,0,0,0,0,0,0,0.128091319725675,0.390178042679635,0.164437904603676,0,0,0,0,0,0.226618685395132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.767175371061182,0,1.00267582127178,0,0,0,0.283604451492204,0,0.614843499851882,0.196468613246569,0,0.741568885568859,0,0,0,0,0,0,0.39752481473341,0,0.347140501607594,0.56530794192401,0,0,0.208994966536811,0,0,0.66944122552934,0,0,0,0,0,0.625098097988558,0.44905874525234,0.112611480483322,4.5994991239765,0.949265659568129,0.183201743930407,0,0,0.436094052142534,0,0.12663051166458,0.132409180813219,0.573673241497627,0,0.560677600142307,0,0.24666754841716,0.933633106199299,0.67355336034844,0.980771418680752,0,2.88087962239999,0,0,0,0,0.23486899728753,0.485618833104395,0,0,0.122834317311768,0,0,0,0,0,0.168336113954066,0.500474079487857,0,0,0,0,0.113432183160021,0.89694817844431,0,0,0.300091096084402,0.309157587715317,0.257640540045629,0,0.337552664482532,0,0.504867548488229,0,0.161646056818812,1.06502877754984,0.302256294682921,0,0,0,0,0.487894824518382,0.397589304964456,0.232387885739037,1.86589899027667,1.26160425437814,1.82488679537915,0,0,0,0,0,0,0,0,0.110293972732394,0,0,0,0,0,0,0,0,0,0,0,1.18157981336281,0.441463099414651,0.122988438543114,0.171567810298526,0.109750285408626,0,0.402115889646523,0.370353780634118,0,0,0,0.463721619900307,0.352226082707465,0,0,0,0,0,0.246217006087397,0,0,0,0,0.141775097242386,0.0895585227028483,0.871901815541886,0,0.985326475791887,0,0,0,0,0.507983154337352,0,0,0,0,0.600686115687835,0,0.336393253036082,0,0.36669142910475,0,0,0,0,1.04007436911366,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179060963239896,0.112085143993527,0,0,0,4.8277978602268,24.7265722329481,12.3726210044431,9.38091085872353,13.3967137847164,0,0,0,0.24538298343828,0,0.271265023699736,0.207970861530807,0,0,0,0,0,1.03473071292505,0,0,0.0868836144680828,0,0.343143423810856,0,0,0,0,0,0,0,0,0,0.128139149255701,0,0,0,0,0.177561725313127,0.0821271560138091,0,0.116210378459959,0.120859449591622,0,0,0.114814448164607,0.364182336013434,0,0.451199612907412,0,0,0,0.105551628892876,0,0,0,0,0.270946437543853,0,0.254876273045038,0,0,0,0,0.256450125116389,0,0,0.309123034943167,0.27470839445503,0.165018999841176,0,0,0,0.193341436584244,0.462145851343933,0.307007349452259,0.275673144969061,0.429680979473094,1.16013355131383,0.255679882248303,0.445160178233687,0,0,0.382838137483752,0,0,0,0,0,0,0,0,0.286249773483982,0,0,0.190630193923825,0,0,0.318203247925937,0,0.179872457583315,0.274537029736055,0,0,0,0,0,0.487426979262569,0,0,0.141405431953713,0,0.551365343546124,0,0,0,0,0,0,0,0,0.196498082026242,0,0,0,0,0,0,0.192444225451024,0,0,0.564862804660675,0,0,0,0,0,0,0,0,0,0,0,0,0,1.92495971052672,0.490080431962063,0,0,0,0.159426272728822,0,0,0,0.324621940274555,0,0,0,0,0.338583555603207,0,0,0,0,0.307240764308458,0,0,0,0,0,0,0.99921590399346,0,0,0,0.242721043499027,0,0.284136146806413,0,0,0,1.9882952955326,1.1253553312841,0.222617410045812,0.659215496907038,0.422250816255987,0,0.276283915531148,0,0,0.246169610922139,0,0.0898683511473268,0,0,0,0,0,0,0.0927680981618513,3.99227596002388,0.260427761085233,0,0,0.1137934482855,0,0,0.344743373241465,0,1.38899995946634,0,1.80894657938112,1.52581736317083,0,0,0.658156191461918,0.10893846351899,0,0.230850775511391,0.113942055847001,0.46112780877612,0.179515288819544,0.108647371922008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.995261931078505,0.176915129006678,0,0,0,0,0.471807930864739,0,0.234264445725339,0,0.586993856796269,2.91336455440911,0,0,9.79432837217568,0.252746318513952,0.901940516486955,1.03688191397247,0,0,0,0,0,0.138674673013139,0,0.293977192243133,0.174118413160805,0.17472666824203,3.0957485844891,0,0,0.0821154570532092,0.290967049465258,0,0.225980740780532,0,0.19871461170299,0.379864775735272,0,0,0,0.39961921916426,0,0.343609788497747,0.686379991447858,0,0.248505071130865,0,0.407712618220842,0.313808538937,0.203996435272644,0,0,0.410716136675979,1.27746588066972,0,0,0.279282401272254,0,2.87149209830726,0,0.429226048136571,0.223171457441873,0.470284307407084,0,0,0.0787831823072236,0.164831716762333,0.13480708770837,0.0984274815147488,0,0.795229689809303,1.49823746722733,0.160753148465019,0.137539436597234,0.415440338029185,0,0.77380195455795,0.728994679896296,0.335434687599266,0.157611414598396,0.262272940674991,0.422401346077626,0.896436696664224,0.191915197319445,0,0,0.76280561296425,0,0,0,0,0,0,0.453248366080503,0,0,0.517131825446202,0.66116300871345,0,0,0.320362237703084,0.471612915298998,0,0,0,0,0,0,0,0,0.327872630709804,0,0.8860681799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| ||
|short_description=p5@PGAP1 | |short_description=p5@PGAP1 | ||
}} | }} |
Latest revision as of 07:36, 19 September 2015
Short description: | p5@PGAP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_PGAP1_5end |
Coexpression cluster: | C4166_neuroectodermal_Neural_small_Neurons_occipital_parietal_duodenum |
Association with transcript: | -133bp_to_ENST00000374738_5end |
EntrezGene: | PGAP1 |
HGNC: | 25712 |
UniProt: | A6NI33 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 8.87e-13 | 8 |
neurectodermal cell | 1.37e-10 | 59 |
neural cell | 4.53e-10 | 25 |
ectodermal cell | 3.80e-08 | 72 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 6.38e-18 | 10 |
neuroendocrine tumor | 2.92e-10 | 6 |
germ cell and embryonal cancer | 1.35e-07 | 22 |
germ cell cancer | 1.35e-07 | 22 |