FFCP PHASE1:Hg19::chr22:30476228..30476253,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-9bp_to_ENST00000429350_5end | |association_with_transcript=-9bp_to_ENST00000429350_5end | ||
|cluster_id=chr22:30476228..30476253,- | |||
|description=CAGE_peak_1_at_ENST00000429350_5end | |description=CAGE_peak_1_at_ENST00000429350_5end | ||
|id=chr22:30476228..30476253,- | |id=chr22:30476228..30476253,- | ||
|ontology_enrichment_celltype=CL:0000128!8.24e-08!7;CL:0000126!8.24e-08!7;CL:0000127!8.24e-08!7;CL:0002453!8.24e-08!7;CL:0002322!9.21e-08!5;CL:1000507!1.81e-07!12;CL:1000494!1.81e-07!12 | |ontology_enrichment_celltype=CL:0000128!8.24e-08!7;CL:0000126!8.24e-08!7;CL:0000127!8.24e-08!7;CL:0002453!8.24e-08!7;CL:0002322!9.21e-08!5;CL:1000507!1.81e-07!12;CL:1000494!1.81e-07!12 | ||
|ontology_enrichment_celltype_v019=CL:0000128;4.44e-17;7!CL:0000126;4.44e-17;7!CL:0000127;4.44e-17;7!CL:0002322;1.99e-16;5!CL:0002319;3.61e-15;25!CL:0002586;1.06e-11;3!CL:0002605;1.81e-11;3!CL:0002603;2.56e-10;3!CL:0000239;3.10e-10;3!CL:1000615;3.10e-10;3!CL:0002306;3.10e-10;3!CL:0000540;4.55e-09;6!CL:0000404;4.55e-09;6!CL:0000149;7.28e-09;4!CL:0000147;2.44e-08;14!CL:0000039;2.68e-08;7!CL:0000586;2.68e-08;7!CL:1000507;1.08e-07;10!CL:1000494;1.08e-07;10!CL:0000047;2.23e-07;2!CL:1000449;5.60e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000128,3.17e-17,7;CL:0000126,3.17e-17,7;CL:0000127,3.17e-17,7;CL:0002453,3.17e-17,7;CL:0002322,1.94e-16,5;CL:0002319,3.48e-15,25;CL:0000047,3.50e-14,8;CL:0002586,1.12e-11,3;CL:0002605,1.88e-11,3;CL:0002603,1.68e-10,3;CL:0000239,3.78e-10,3;CL:1000615,3.78e-10,3;CL:0002306,3.78e-10,3;CL:0000133,5.95e-10,59;CL:0000540,4.46e-09,6;CL:0000031,4.46e-09,6;CL:0000404,4.46e-09,6;CL:0000149,7.59e-09,4;CL:0000221,1.20e-08,72;CL:0000147,2.63e-08,14;CL:0000039,3.03e-08,7;CL:0000586,3.03e-08,7;CL:1000507,1.15e-07,10;CL:1000494,1.15e-07,10;CL:1000449,5.98e-07,15 | |||
|ontology_enrichment_development_v019=UBERON:0009117;3.59e-12;10!UBERON:0005564;3.59e-12;10!CL:0000031;4.55e-09;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005743!4.11e-34!86;UBERON:0003075!1.81e-32!86;UBERON:0007284!1.81e-32!86;UBERON:0002346!3.39e-30!90;UBERON:0001017!9.92e-30!82;UBERON:0000073!4.02e-29!94;UBERON:0001016!4.02e-29!94;UBERON:0001049!3.99e-28!57;UBERON:0005068!3.99e-28!57;UBERON:0006241!3.99e-28!57;UBERON:0007135!3.99e-28!57;UBERON:0002616!2.39e-26!59;UBERON:0003056!6.98e-26!61;UBERON:0000955!1.52e-22!69;UBERON:0006238!1.52e-22!69;UBERON:0002780!5.31e-20!41;UBERON:0001890!5.31e-20!41;UBERON:0006240!5.31e-20!41;UBERON:0000033!8.09e-20!123;UBERON:0007023!1.09e-19!115;UBERON:0000153!1.39e-19!129;UBERON:0007811!1.39e-19!129;UBERON:0003080!2.66e-19!42;UBERON:0004121!3.21e-18!169;UBERON:0002020!9.42e-18!34;UBERON:0003528!9.42e-18!34;UBERON:0001869!1.24e-17!32;UBERON:0001893!1.61e-17!34;UBERON:0000924!2.50e-17!173;UBERON:0006601!2.50e-17!173;UBERON:0002791!8.37e-17!33;UBERON:0000025!7.46e-12!194;UBERON:0000956!1.86e-11!25;UBERON:0000203!1.86e-11!25;UBERON:0000119!1.93e-11!312;UBERON:0000483!2.35e-11!309;UBERON:0003076!4.44e-10!15;UBERON:0003057!4.44e-10!15;UBERON:0004733!3.43e-09!12;UBERON:0002028!3.43e-09!12;UBERON:0007277!3.43e-09!12;UBERON:0000477!3.62e-09!286;UBERON:0000064!5.93e-09!219;UBERON:0007625!7.44e-09!11;UBERON:0000475!1.41e-08!365;UBERON:0000970!1.84e-08!20;UBERON:0002619!2.21e-08!22;UBERON:0004732!2.75e-08!13;UBERON:0002680!3.03e-08!9;UBERON:0001895!3.03e-08!9;UBERON:0010092!3.03e-08!9;UBERON:0002308!3.74e-08!9;UBERON:0000125!3.74e-08!9;UBERON:0002104!6.88e-08!21;UBERON:0000481!9.33e-08!347;UBERON:0000019!9.91e-08!19;UBERON:0000047!9.91e-08!19;UBERON:0004088!9.91e-08!19;UBERON:0003072!9.91e-08!19;UBERON:0003071!9.91e-08!19;UBERON:0004128!9.91e-08!19;UBERON:0009773!1.81e-07!12;UBERON:0001231!1.81e-07!12;UBERON:0004810!1.81e-07!12;UBERON:0003135!1.83e-07!11;UBERON:0004111!3.50e-07!241;UBERON:0006555!4.34e-07!17;UBERON:0005103!4.34e-07!17;UBERON:0000083!4.34e-07!17;UBERON:0009201!4.34e-07!17;UBERON:0004819!4.34e-07!17;UBERON:0006553!4.34e-07!17;UBERON:0003074!4.34e-07!17;UBERON:0003060!4.34e-07!17;UBERON:0000020!6.67e-07!23;UBERON:0001950!7.71e-07!20;UBERON:0000473!8.44e-07!8;UBERON:0004876!9.41e-07!20 | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;2.10e-15;8!UBERON:0001781;1.06e-11;3!UBERON:0001782;1.06e-11;3!UBERON:0000966;1.61e-11;5!UBERON:0005388;1.61e-11;5!UBERON:0001802;1.61e-11;5!UBERON:0003135;5.38e-11;11!UBERON:0006853;3.10e-10;3!UBERON:0007685;3.10e-10;3!UBERON:0004134;3.10e-10;3!UBERON:0002037;1.03e-08;6!UBERON:0004211;1.08e-07;10!UBERON:0009773;1.08e-07;10!UBERON:0001231;1.08e-07;10!UBERON:0004810;1.08e-07;10!UBERON:0007625;1.43e-07;11!UBERON:0006555;5.60e-07;15!UBERON:0004819;5.60e-07;15!UBERON:0001285;5.60e-07;15!UBERON:0007684;5.60e-07;15!UBERON:0003101;6.89e-07;22!UBERON:0000079;6.89e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,2.64e-15,8;UBERON:0001782,1.12e-11,3;UBERON:0005424,1.12e-11,3;UBERON:0003135,6.32e-11,11;UBERON:0006853,3.78e-10,3;UBERON:0007685,3.78e-10,3;UBERON:0004134,3.78e-10,3;UBERON:0000966,1.16e-09,6;UBERON:0005388,1.16e-09,6;UBERON:0001802,1.16e-09,6;UBERON:0002037,6.41e-09,6;UBERON:0006215,6.41e-09,6;UBERON:0001781,7.59e-09,4;UBERON:0004810,1.15e-07,10;UBERON:0007625,1.68e-07,11;UBERON:0003075,2.13e-07,82;UBERON:0007284,2.13e-07,82;UBERON:0001017,2.69e-07,81;UBERON:0003076,4.79e-07,15;UBERON:0003057,4.79e-07,15;UBERON:0004211,5.98e-07,15;UBERON:0009773,5.98e-07,15;UBERON:0001231,5.98e-07,15;UBERON:0001285,5.98e-07,15;UBERON:0007684,5.98e-07,15;UBERON:0004208,5.98e-07,15;UBERON:0002346,6.90e-07,86;UBERON:0001048,7.08e-07,160;UBERON:0003101,7.59e-07,22;UBERON:0000079,7.59e-07,22 | |||
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| ||
|short_description=p1@ENST00000429350 | |short_description=p1@ENST00000429350 | ||
}} | }} |
Latest revision as of 20:02, 28 July 2015
Short description: | p1@ENST00000429350 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ENST00000429350_5end |
Coexpression cluster: | NA |
Association with transcript: | -9bp_to_ENST00000429350_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
oligodendrocyte | 3.17e-17 | 7 |
macroglial cell | 3.17e-17 | 7 |
astrocyte | 3.17e-17 | 7 |
oligodendrocyte precursor cell | 3.17e-17 | 7 |
embryonic stem cell | 1.94e-16 | 5 |
neural cell | 3.48e-15 | 25 |
neuronal stem cell | 3.50e-14 | 8 |
retinal pigment epithelial cell | 1.12e-11 | 3 |
astrocyte of the cerebral cortex | 1.88e-11 | 3 |
astrocyte of the cerebellum | 1.68e-10 | 3 |
brush border epithelial cell | 3.78e-10 | 3 |
kidney cortex tubule cell | 3.78e-10 | 3 |
epithelial cell of proximal tubule | 3.78e-10 | 3 |
neurectodermal cell | 5.95e-10 | 59 |
neuron | 4.46e-09 | 6 |
neuroblast | 4.46e-09 | 6 |
electrically signaling cell | 4.46e-09 | 6 |
visual pigment cell | 7.59e-09 | 4 |
ectodermal cell | 1.20e-08 | 72 |
pigment cell | 2.63e-08 | 14 |
germ line cell | 3.03e-08 | 7 |
germ cell | 3.03e-08 | 7 |
kidney tubule cell | 1.15e-07 | 10 |
nephron tubule epithelial cell | 1.15e-07 | 10 |
epithelial cell of nephron | 5.98e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
testis | 2.64e-15 | 8 |
pigmented layer of retina | 1.12e-11 | 3 |
presumptive retinal pigmented epithelium | 1.12e-11 | 3 |
male reproductive organ | 6.32e-11 | 11 |
renal cortex tubule | 3.78e-10 | 3 |
region of nephron tubule | 3.78e-10 | 3 |
proximal tubule | 3.78e-10 | 3 |
retina | 1.16e-09 | 6 |
photoreceptor array | 1.16e-09 | 6 |
posterior segment of eyeball | 1.16e-09 | 6 |
cerebellum | 6.41e-09 | 6 |
rhombic lip | 6.41e-09 | 6 |
layer of retina | 7.59e-09 | 4 |
nephron tubule epithelium | 1.15e-07 | 10 |
pigment epithelium of eye | 1.68e-07 | 11 |
neural plate | 2.13e-07 | 82 |
presumptive neural plate | 2.13e-07 | 82 |
central nervous system | 2.69e-07 | 81 |
posterior neural tube | 4.79e-07 | 15 |
chordal neural plate | 4.79e-07 | 15 |
nephron epithelium | 5.98e-07 | 15 |
renal tubule | 5.98e-07 | 15 |
nephron tubule | 5.98e-07 | 15 |
nephron | 5.98e-07 | 15 |
uriniferous tubule | 5.98e-07 | 15 |
nephrogenic mesenchyme | 5.98e-07 | 15 |
neurectoderm | 6.90e-07 | 86 |
primordium | 7.08e-07 | 160 |
male organism | 7.59e-07 | 22 |
male reproductive system | 7.59e-07 | 22 |