FFCP PHASE1:Hg19::chr11:57103327..57103372,-: Difference between revisions
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6749 | |EntrezGene=6749 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11327 | |HGNC=11327 | ||
|TSSclassifier=strong | |||
|UniProt=Q08945,E9PPZ7 | |UniProt=Q08945,E9PPZ7 | ||
|association_with_transcript=0bp_to_ENST00000278412,ENST00000529002,NM_003146,uc001njt.2_5end | |||
|cluster_id=chr11:57103327..57103372,- | |||
|coexpression_cluster_id=C281 | |||
|description=CAGE_peak_1_at_SSRP1_5end | |||
|id=chr11:57103327..57103372,- | |||
|ontology_enrichment_celltype=CL:0000066!1.51e-23!254;CL:0000548!8.25e-16!679;CL:0000004!8.25e-16!679;CL:0000255!8.25e-16!679;CL:0000012!1.14e-15!682;CL:0002321!3.99e-11!248;CL:0000220!1.16e-10!246;CL:0000076!3.47e-07!62;CL:0000003!4.97e-07!722;CL:0000333!8.22e-07!41 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.67e-23,253;CL:0002321,2.58e-11,250;CL:0000076,7.59e-07,63;CL:0000333,8.22e-07,41 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!4.32e-45!235;DOID:14566!1.35e-42!239;DOID:0050687!2.36e-27!143;DOID:305!2.94e-22!106;DOID:0050686!5.43e-19!137;DOID:2531!8.38e-16!51;DOID:0060083!8.38e-16!51;DOID:1240!1.86e-12!39;DOID:8692!2.14e-10!31;DOID:3095!6.75e-07!22;DOID:2994!6.75e-07!22 | |||
|ontology_enrichment_disease_v019=DOID:8692;4.26e-10;31!DOID:1240;5.65e-10;39!DOID:2531;1.12e-09;51!DOID:0060083;1.12e-09;51!DOID:305;1.68e-07;106!DOID:3095;6.29e-07;22!DOID:2994;6.29e-07;22 | |||
|ontology_enrichment_disease_v019_2=DOID:162,4.32e-45,235;DOID:14566,1.35e-42,239;DOID:0050687,2.36e-27,143;DOID:305,2.94e-22,106;DOID:0050686,5.43e-19,137;DOID:2531,8.38e-16,51;DOID:0060083,8.38e-16,51;DOID:1240,1.86e-12,39;DOID:8692,2.14e-10,31;DOID:3095,6.75e-07,22;DOID:2994,6.75e-07,22 | |||
|ontology_enrichment_uberon=UBERON:0003104!6.38e-11!238;UBERON:0009142!6.38e-11!238;UBERON:0000077!5.45e-09!130;UBERON:0001048!1.18e-08!168;UBERON:0001007!2.63e-08!155;UBERON:0001555!2.63e-08!155;UBERON:0007026!2.63e-08!155;UBERON:0008947!2.87e-08!38;UBERON:0003258!2.87e-08!38;UBERON:0001041!6.03e-08!98;UBERON:0004119!7.70e-08!169;UBERON:0000925!7.70e-08!169;UBERON:0006595!7.70e-08!169;UBERON:0000072!9.60e-08!46;UBERON:0004921!2.17e-07!129;UBERON:0004185!2.17e-07!129 | |||
|ontology_enrichment_uberon_v019=UBERON:0000072;5.42e-08;37 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0008947,2.87e-08,38;UBERON:0003258,2.87e-08,38;UBERON:0000072,1.00e-07,47;UBERON:0001048,3.23e-07,160;UBERON:0001007,3.34e-07,145;UBERON:0001555,3.34e-07,145;UBERON:0007026,3.34e-07,145;UBERON:0005177,5.60e-07,101;UBERON:0001041,5.99e-07,87;UBERON:0004119,8.29e-07,160;UBERON:0000925,8.29e-07,160;UBERON:0006595,8.29e-07,160 | |||
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| ||
|short_description=p1@SSRP1 | |||
}} | }} |
Latest revision as of 08:59, 18 September 2015
Short description: | p1@SSRP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SSRP1_5end |
Coexpression cluster: | C281_Hodgkin_Reticulocytes_chronic_NK_acute_retinoblastoma_small |
Association with transcript: | 0bp_to_ENST00000278412, ENST00000529002, NM_003146, uc001njt.2_5end |
EntrezGene: | SSRP1 |
HGNC: | 11327 |
UniProt: | Q08945E9PPZ7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.67e-23 | 253 |
embryonic cell | 2.58e-11 | 250 |
squamous epithelial cell | 7.59e-07 | 63 |
migratory neural crest cell | 8.22e-07 | 41 |
Ontology term | p-value | n |
---|---|---|
respiratory primordium | 2.87e-08 | 38 |
endoderm of foregut | 2.87e-08 | 38 |
segment of respiratory tract | 1.00e-07 | 47 |
primordium | 3.23e-07 | 160 |
digestive system | 3.34e-07 | 145 |
digestive tract | 3.34e-07 | 145 |
primitive gut | 3.34e-07 | 145 |
trunk region element | 5.60e-07 | 101 |
foregut | 5.99e-07 | 87 |
endoderm-derived structure | 8.29e-07 | 160 |
endoderm | 8.29e-07 | 160 |
presumptive endoderm | 8.29e-07 | 160 |
Ontology term | p-value | n |
---|---|---|
cancer | 4.32e-45 | 235 |
disease of cellular proliferation | 1.35e-42 | 239 |
cell type cancer | 2.36e-27 | 143 |
carcinoma | 2.94e-22 | 106 |
organ system cancer | 5.43e-19 | 137 |
hematologic cancer | 8.38e-16 | 51 |
immune system cancer | 8.38e-16 | 51 |
leukemia | 1.86e-12 | 39 |
myeloid leukemia | 2.14e-10 | 31 |
germ cell and embryonal cancer | 6.75e-07 | 22 |
germ cell cancer | 6.75e-07 | 22 |