FFCP PHASE1:Hg19::chr17:38613290..38613313,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr17:38613290..38613313,+ | |||
|coexpression_cluster_id=C353 | |||
|description=CAGE_peak_at_chr17:38613290..38613313,+ | |description=CAGE_peak_at_chr17:38613290..38613313,+ | ||
|id=chr17:38613290..38613313,+ | |id=chr17:38613290..38613313,+ | ||
|ontology_enrichment_celltype=CL:0000055!3.82e-17!180;CL:0000057!3.63e-13!75;CL:0000680!8.94e-09!57;CL:0000056!8.94e-09!57;CL:0000355!8.94e-09!57;CL:0000183!2.10e-08!59;CL:0000187!1.47e-07!54;CL:0000222!2.10e-07!119 | |ontology_enrichment_celltype=CL:0000055!3.82e-17!180;CL:0000057!3.63e-13!75;CL:0000680!8.94e-09!57;CL:0000056!8.94e-09!57;CL:0000355!8.94e-09!57;CL:0000183!2.10e-08!59;CL:0000187!1.47e-07!54;CL:0000222!2.10e-07!119 | ||
|ontology_enrichment_celltype_v019=CL:0000499;6.54e-10;28!CL:0002540;8.05e-09;6!CL:0002552;1.03e-08;5!CL:0000135;7.08e-07;3!CL:0000388;7.08e-07;3!CL:0000153;9.26e-07;9!CL:0000447;9.26e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000499,9.53e-10,28;CL:0000057,1.45e-08,76;CL:0002540,1.48e-08,6;CL:0002552,1.58e-08,5;CL:0000136,4.32e-07,15;CL:0000135,7.37e-07,3;CL:0000388,7.37e-07,3;CL:0000153,7.99e-07,9;CL:0000447,7.99e-07,9 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002100!3.71e-12!216;UBERON:0005256!5.50e-11!143;UBERON:0000914!1.93e-09!83;UBERON:0002329!1.93e-09!83;UBERON:0003077!1.93e-09!83;UBERON:0003059!1.93e-09!83;UBERON:0007282!1.93e-09!83;UBERON:0009618!1.93e-09!83;UBERON:0007285!1.93e-09!83;UBERON:0004872!3.59e-09!84;UBERON:0000490!6.75e-09!138;UBERON:0002049!1.28e-08!79;UBERON:0007798!1.28e-08!79;UBERON:0002385!4.16e-08!63;UBERON:0001015!4.16e-08!63;UBERON:0000383!4.16e-08!63;UBERON:0000486!7.35e-08!82;UBERON:0003104!8.84e-08!238;UBERON:0009142!8.84e-08!238;UBERON:0001134!1.12e-07!61;UBERON:0002036!1.12e-07!61;UBERON:0003082!1.12e-07!61;UBERON:0000481!1.38e-07!347;UBERON:0004290!1.64e-07!70;UBERON:0000475!4.03e-07!365;UBERON:0004535!6.38e-07!110;UBERON:0001009!9.43e-07!113 | |ontology_enrichment_uberon=UBERON:0002100!3.71e-12!216;UBERON:0005256!5.50e-11!143;UBERON:0000914!1.93e-09!83;UBERON:0002329!1.93e-09!83;UBERON:0003077!1.93e-09!83;UBERON:0003059!1.93e-09!83;UBERON:0007282!1.93e-09!83;UBERON:0009618!1.93e-09!83;UBERON:0007285!1.93e-09!83;UBERON:0004872!3.59e-09!84;UBERON:0000490!6.75e-09!138;UBERON:0002049!1.28e-08!79;UBERON:0007798!1.28e-08!79;UBERON:0002385!4.16e-08!63;UBERON:0001015!4.16e-08!63;UBERON:0000383!4.16e-08!63;UBERON:0000486!7.35e-08!82;UBERON:0003104!8.84e-08!238;UBERON:0009142!8.84e-08!238;UBERON:0001134!1.12e-07!61;UBERON:0002036!1.12e-07!61;UBERON:0003082!1.12e-07!61;UBERON:0000481!1.38e-07!347;UBERON:0004290!1.64e-07!70;UBERON:0000475!4.03e-07!365;UBERON:0004535!6.38e-07!110;UBERON:0001009!9.43e-07!113 | ||
|ontology_enrichment_uberon_v019=UBERON:0004905;7.35e-11;8!UBERON:0000982;7.35e-11;8!UBERON:0004770;7.35e-11;8!UBERON:0004457;4.90e-10;9!UBERON:0000042;4.90e-10;9!UBERON:0011135;2.86e-09;5!UBERON:0002216;2.86e-09;5!UBERON:0011134;2.86e-09;5!UBERON:0002209;2.86e-09;5!UBERON:0002213;2.86e-09;5!UBERON:0007844;2.86e-09;5!UBERON:0011138;2.86e-09;5!UBERON:0001130;2.86e-09;5!UBERON:0001066;2.86e-09;5!UBERON:0001468;2.86e-09;5!UBERON:0003688;3.29e-08;6!UBERON:0002358;3.29e-08;6!UBERON:0003684;3.29e-08;6!UBERON:0001178;3.29e-08;6!UBERON:0001434;7.04e-08;36!UBERON:0004765;9.92e-08;26!UBERON:0000075;1.82e-07;16!UBERON:0007846;7.08e-07;3!UBERON:0000043;7.08e-07;3!UBERON:0007845;7.08e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004905,5.56e-11,8;UBERON:0000982,5.56e-11,8;UBERON:0004770,5.56e-11,8;UBERON:0011135,2.10e-09,5;UBERON:0002216,2.10e-09,5;UBERON:0011134,2.10e-09,5;UBERON:0002209,2.10e-09,5;UBERON:0002213,2.10e-09,5;UBERON:0005856,2.10e-09,5;UBERON:0005866,2.10e-09,5;UBERON:0005863,2.10e-09,5;UBERON:0007844,2.10e-09,5;UBERON:0011138,2.10e-09,5;UBERON:0001130,2.10e-09,5;UBERON:0001066,2.10e-09,5;UBERON:0001468,2.10e-09,5;UBERON:0003688,1.98e-08,6;UBERON:0002358,1.98e-08,6;UBERON:0003684,1.98e-08,6;UBERON:0001178,1.98e-08,6;UBERON:0000075,1.55e-07,16;UBERON:0004457,2.80e-07,12;UBERON:0000042,2.80e-07,12;UBERON:0007846,7.37e-07,3;UBERON:0000043,7.37e-07,3;UBERON:0007845,7.37e-07,3;UBERON:0005904,7.76e-07,4 | |||
|phase1_expression=2.18014055124668,4.28201047781966,1.26858963686374,1.0007329835313,1.78784437770915,1.74467704820074,5.06599756336621,0.631719873426831,2.87304191019822,0,0,0,0,6.06455129504228,3.64537113300707,0.672325146451775,0.602694528023977,0,1.46379839637152,0,0.204000691244253,0,0,0,0.251085279189606,0,0.0821005894499457,0.0787107813136792,0,0,0.154816123316076,0,0,0.369754010166788,0,0,0,0,0,0,0,0,0.257575567634187,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164437904603676,0.276350017785848,0.289803085735052,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.68280343881454,0.12786256184353,1.44575660953827,3.00802746381534,8.69079113764942,0,2.91980922181582,0.189069634328136,1.10864698731282,0.614843499851882,0.130979075497713,0,0,0,0,0,0,0,0,0.39752481473341,0,0.694281003215189,0.56530794192401,0,0.550236083880135,0,0,0,0.33472061276467,0.402829317109147,0.760272105718513,1.22031028774085,0,1.62028389576352,0.446498641420399,0,0.225222960966644,0,0,0.732806975721629,0,0,0,0.993943903390637,1.01304409331664,0.529636723252875,0.573673241497627,0.709336764396714,1.68203280042692,1.06748995729705,1.2333377420858,0.622422070799533,0.269421344139376,0.163461903113459,0.908144565869588,2.30470369792,0,0.624320153660641,0.570471821544449,0.298897361103602,0.23486899728753,0,0,2.04154171254893,1.10550885580591,2.9964476540972,3.56400857184616,7.41800787835671,0,0.718618141816238,0.168336113954066,0.750711119231785,0.554128230968366,1.31693286264251,6.74273150757843,4.8076178850111,0.680593098960126,0,0.213557388818567,1.90738711043606,0,0.412210116953756,0,0.744467425326359,0.168776332241266,0.389748020644795,0,0.644349290496095,1.13152239773168,0,0.201504196455281,0.339121184620975,0,0,0.286804595389004,0.121973706129595,0,0.464775771478074,0.10366105501537,0,0,0,2.57296375277154,0,2.3218396401599,5.0531563716871,0,0,0,0.110293972732394,0,0,0,0,0,1.4763109092493,0,0.4115740113314,0,6.33775174109154,0,0.590789906681404,0,0.122988438543114,0.514703430895577,0,0,0,0.0925884451585296,0,1.03993478527958,4.3299402607582,0,0.234817388471643,0.288732895522148,0,0.380508304469197,0,0.858486162094873,0,0,0,0,0,0,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,1.71072446022705,0.205654985406647,0,0.285826432630578,0.448524337381443,0,1.6134422880609,0.258543431515556,0,1.690605505112,0.531876233169741,0,1.54324424557285,1.41849132023278,1.0656887160644,1.42977993658148,2.17048642156577,1.64648067356154,0,1.42156779497018,0,0.904318131178758,0.871533458600294,1.19967589418468,0,0,0,0.239624855491583,1.14861935834114,0,2.75084482668401,6.1642896765115,0.537182889719687,0,0,0,0,0,0,0,0,0,0,0,0,10.0607023209695,10.5035809422532,1.62759014219841,2.9115920614313,11.4194552830184,4.41566762095017,2.10854546986884,0.300946099727719,9.09630016223939,2.0694614258501,0,0.553107505625109,1.21637060255316,1.17480694477644,1.37257369524342,0,0,0,0.303127571446259,0,1.20956117331872,0.496215615637554,0.153461973288062,4.77122160536225,1.92208723883551,1.53512174720011,1.28683136914886,4.45254199334973,0.308419387605311,0.887808626565635,0.410635780069046,2.07701771673448,1.04589340613963,0,0,0,1.14814448164607,1.27463817604702,1.18011973463482,0,0.15403067420883,0,0,0,0,0,0.863663664408557,0,0.270946437543853,1.00337954770971,0,0,0,0,0,0,0,0,0.515205058238611,0,0.082509499920588,0,0,6.42735719376638,0.676695028044854,0.462145851343933,0.307007349452259,0.413509717453592,1.07420244868274,5.65565106265491,0.93749290157711,0.178064071293475,0,0,0,0.10115778085555,0.929691098594572,0.62962469366128,0,0,0,0,0.18532421910392,0.286249773483982,1.48863347743867,1.58189712359363,0.762520775695299,0.511795582622668,1.71175595213568,0.636406495851874,0.78494864019923,0.539617372749944,1.64722217841633,0.942499218765491,1.2130948894399,0,0,0.975267478179181,1.94970791705028,2.11300293513511,0.272999822815972,0.848432591722276,1.13008116620243,0,0,0.876901770507525,0,0.655894752046633,0.202910376962704,0.6196469961995,0.281695602532241,0,0.491245205065606,0.35667105148125,0.354761064070598,11.1887046707762,6.58589785919804,0.379473173765715,0.699869440489966,0,1.34060455107157,1.08890984861323,0.564862804660675,0.43050537267123,0,1.7737206141467,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.338583555603207,0,0,0.425846237690326,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0.121360521749513,0,0,0,0,0,0,0,0.222617410045812,0,0,0.597743964753209,0,0,0,0,1.24415835064723,0,0,0,0.493217028184668,0,1.11136990144637,0,0.0927680981618513,0,0.520855522170466,0,0,0,0,0,0,0.583209226766509,0,0,0,0,0,0,0,0,0,1.30815439456455,0.113942055847001,0,0,0,0,0.457987967009312,0.533034776018635,0,0,0.166211681900156,0,0.19606253431774,0.167821586975843,0,0,0,0,0,0,0.995261931078505,0.265372693510018,0,0,0,0,0,0,0,0,0,0,1.57833761139756,1.20990716048664,0,1.45329133145522,0,0,1.32930774541437,0.330991955875499,0.313932918407225,0,0,0,0,0,0,1.39781334593624,0,0,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| ||
|short_description=p@chr17:38613290..38613313,+ | |short_description=p@chr17:38613290..38613313,+ | ||
}} | }} |
Latest revision as of 16:28, 25 July 2015
Short description: | p@chr17:38613290..38613313, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr17:38613290..38613313, + |
Coexpression cluster: | C353_tenocyte_Nucleus_Chondrocyte_Anulus_Fibroblast_Synoviocyte_tridermal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
stromal cell | 9.53e-10 | 28 |
fibroblast | 1.45e-08 | 76 |
mesenchymal stem cell of the bone marrow | 1.48e-08 | 6 |
fibroblast of gingiva | 1.58e-08 | 5 |
fat cell | 4.32e-07 | 15 |
fibrocyte | 7.37e-07 | 3 |
tendon cell | 7.37e-07 | 3 |
GAG secreting cell | 7.99e-07 | 9 |
carbohydrate secreting cell | 7.99e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
articulation | 5.56e-11 | 8 |
skeletal joint | 5.56e-11 | 8 |
articular system | 5.56e-11 | 8 |
intervertebral cartilage | 2.10e-09 | 5 |
symphysis | 2.10e-09 | 5 |
nonsynovial joint | 2.10e-09 | 5 |
fibrous joint | 2.10e-09 | 5 |
cartilaginous joint | 2.10e-09 | 5 |
developing mesenchymal condensation | 2.10e-09 | 5 |
pre-cartilage condensation | 2.10e-09 | 5 |
cartilaginous condensation | 2.10e-09 | 5 |
cartilage element | 2.10e-09 | 5 |
post-cranial axial skeletal system | 2.10e-09 | 5 |
vertebral column | 2.10e-09 | 5 |
intervertebral disk | 2.10e-09 | 5 |
intervertebral joint | 2.10e-09 | 5 |
omentum | 1.98e-08 | 6 |
peritoneum | 1.98e-08 | 6 |
abdominal cavity | 1.98e-08 | 6 |
visceral peritoneum | 1.98e-08 | 6 |
subdivision of skeletal system | 1.55e-07 | 16 |
cavity lining | 2.80e-07 | 12 |
serous membrane | 2.80e-07 | 12 |
dense regular connective tissue | 7.37e-07 | 3 |
tendon | 7.37e-07 | 3 |
regular connective tissue | 7.37e-07 | 3 |
duct of male reproductive system | 7.76e-07 | 4 |