FFCP PHASE1:Hg19::chr17:38613261..38613276,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr17:38613261..38613276,+ | |||
|coexpression_cluster_id=C353 | |||
|description=CAGE_peak_at_chr17:38613261..38613276,+ | |description=CAGE_peak_at_chr17:38613261..38613276,+ | ||
|id=chr17:38613261..38613276,+ | |id=chr17:38613261..38613276,+ | ||
|ontology_enrichment_celltype=CL:0000055!2.43e-19!180;CL:0000057!2.08e-16!75;CL:0000680!6.56e-11!57;CL:0000056!6.56e-11!57;CL:0000355!6.56e-11!57;CL:0000222!8.50e-11!119;CL:0000183!5.80e-10!59;CL:0000187!2.31e-09!54;CL:0000192!3.65e-09!42;CL:0000514!3.65e-09!42;CL:0000393!2.32e-07!60;CL:0000211!2.32e-07!60 | |ontology_enrichment_celltype=CL:0000055!2.43e-19!180;CL:0000057!2.08e-16!75;CL:0000680!6.56e-11!57;CL:0000056!6.56e-11!57;CL:0000355!6.56e-11!57;CL:0000222!8.50e-11!119;CL:0000183!5.80e-10!59;CL:0000187!2.31e-09!54;CL:0000192!3.65e-09!42;CL:0000514!3.65e-09!42;CL:0000393!2.32e-07!60;CL:0000211!2.32e-07!60 | ||
|ontology_enrichment_celltype_v019=CL:0000135;1.65e-09;3!CL:0000388;1.65e-09;3!CL:0002564;4.41e-09;3!CL:0000136;6.02e-09;13!CL:0002521;2.36e-08;3!CL:0000197;1.40e-07;6!CL:0000098;1.40e-07;6!CL:0002167;1.40e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000136,1.29e-09,15;CL:0000135,1.49e-09,3;CL:0000388,1.49e-09,3;CL:0002564,3.04e-09,3;CL:0002521,2.09e-08,3;CL:0000197,1.47e-07,6;CL:0000098,1.47e-07,6;CL:0002167,1.47e-07,6;CL:0002602,8.56e-07,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:0060084;1.10e-08;3!DOID:127;1.10e-08;3 | |||
|ontology_enrichment_disease_v019_2=DOID:0060084,6.98e-09,3;DOID:127,6.98e-09,3;DOID:0060072,9.72e-07,4 | |||
|ontology_enrichment_uberon=UBERON:0005256!2.49e-14!143;UBERON:0002100!4.74e-14!216;UBERON:0000914!2.82e-13!83;UBERON:0002329!2.82e-13!83;UBERON:0003077!2.82e-13!83;UBERON:0003059!2.82e-13!83;UBERON:0007282!2.82e-13!83;UBERON:0009618!2.82e-13!83;UBERON:0007285!2.82e-13!83;UBERON:0004290!2.39e-10!70;UBERON:0001134!6.46e-10!61;UBERON:0002036!6.46e-10!61;UBERON:0003082!6.46e-10!61;UBERON:0002385!1.04e-09!63;UBERON:0001015!1.04e-09!63;UBERON:0000383!1.04e-09!63;UBERON:0000475!1.57e-09!365;UBERON:0000486!1.73e-09!82;UBERON:0000490!1.53e-07!138;UBERON:0003104!2.26e-07!238;UBERON:0009142!2.26e-07!238;UBERON:0002049!8.61e-07!79;UBERON:0007798!8.61e-07!79 | |||
|ontology_enrichment_uberon_v019=UBERON:0004905;1.16e-16;8!UBERON:0000982;1.16e-16;8!UBERON:0004770;1.16e-16;8!UBERON:0011135;4.30e-14;5!UBERON:0002216;4.30e-14;5!UBERON:0011134;4.30e-14;5!UBERON:0002209;4.30e-14;5!UBERON:0002213;4.30e-14;5!UBERON:0007844;4.30e-14;5!UBERON:0011138;4.30e-14;5!UBERON:0001130;4.30e-14;5!UBERON:0001066;4.30e-14;5!UBERON:0001468;4.30e-14;5!UBERON:0007846;1.65e-09;3!UBERON:0000043;1.65e-09;3!UBERON:0007845;1.65e-09;3!UBERON:0002242;4.41e-09;3!UBERON:0001013;1.74e-08;14!UBERON:0002190;2.36e-08;3!UBERON:0000075;1.80e-07;16!UBERON:0004457;2.48e-07;9!UBERON:0000042;2.48e-07;9!UBERON:0005406;9.01e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004905,6.94e-17,8;UBERON:0000982,6.94e-17,8;UBERON:0004770,6.94e-17,8;UBERON:0011135,2.31e-14,5;UBERON:0002216,2.31e-14,5;UBERON:0011134,2.31e-14,5;UBERON:0002209,2.31e-14,5;UBERON:0002213,2.31e-14,5;UBERON:0005856,2.31e-14,5;UBERON:0005866,2.31e-14,5;UBERON:0005863,2.31e-14,5;UBERON:0007844,2.31e-14,5;UBERON:0011138,2.31e-14,5;UBERON:0001130,2.31e-14,5;UBERON:0001066,2.31e-14,5;UBERON:0001468,2.31e-14,5;UBERON:0007846,1.49e-09,3;UBERON:0000043,1.49e-09,3;UBERON:0007845,1.49e-09,3;UBERON:0002242,3.04e-09,3;UBERON:0003068,3.04e-09,3;UBERON:0002328,3.04e-09,3;UBERON:0004880,3.04e-09,3;UBERON:0001013,2.01e-08,14;UBERON:0002190,2.09e-08,3;UBERON:0000075,1.14e-07,16;UBERON:0006444,8.56e-07,2;UBERON:0001995,8.56e-07,2;UBERON:0004715,8.56e-07,2;UBERON:0005406,8.80e-07,2;UBERON:0009569,9.28e-07,112 | |||
|phase1_expression=1.09007027562334,0.856402095563933,0.422863212287913,7.00513088471913,1.34088328328186,3.48935409640147,5.06599756336621,1.26343974685366,1.56711376919903,0,0,0.218441372130172,0,2.97039247104112,6.62794751455832,0,0.602694528023977,0,0.975865597581014,0,0,0,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.447830948479849,0.32389366601898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383220493601921,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.722878304769133,4.51204119572301,4.05570253090306,0,0.486634870302636,0.0945348171640679,0.665188192387692,0.263504357079378,0.196468613246569,0,0.370784442784429,0,0,0,0,0,0,0.198762407366705,0,0,1.13061588384802,0,0,0,0.516833518338658,0.35576626268671,0,0,0,0.488124115096339,0,0,0,0,0.225222960966644,0,0,0.366403487860815,0,0,0,2.48485975847659,0,0.132409180813219,0.286836620748814,0.709336764396714,1.12135520028461,1.06748995729705,0.49333509683432,0.311211035399766,0.269421344139376,0.163461903113459,1.05950199351452,2.88087962239999,0.468642863667593,0,0.570471821544449,0.298897361103602,0,0.161872944368132,0,0.816616685019573,0.61417158655884,1.23990937410919,0,2.47266929278557,0,0.718618141816238,0.168336113954066,0.125118519871964,0,0.438977620880838,3.98434134538726,1.95309476578576,0.113432183160021,0.179389635688862,1.06778694409284,0.423863802319124,0.600182192168805,0.618315175430633,0,0.37223371266318,0,0.487185025805993,0.252433774244115,0.184099797284599,0.80823028409406,0.355009592516614,0,0.508681776931463,0,0,0,0,0,0,0,0,0,0,0.643240938192885,1.38134921352481,0,0.721879481669586,0,0,0,0,0,0,0,0,0,0,1.40241773803446,1.2347220339942,0,2.53510069643662,0,0,0,0,0,0,0,0,0,0.651616610620649,0,0,0,0.469634776943287,0.288732895522148,0.462985512576611,0,1.58040879591855,0,0,0,0,0,0.16798212819886,0,0,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,0.560655421726804,0,0.51336800074665,0,7.15312891703765,0.845302752556,0.26593811658487,0,0.514414748524284,1.41849132023278,0.799266537048298,1.42977993658148,1.08524321078289,0,0,1.42156779497018,0,0.301439377059586,0,0.599837947092342,0,0,2.10833939483032,0.239624855491583,0,0,1.44781306667579,1.84928690295345,0.537182889719687,0,0,0,0,0,0,0,0,0,0,0,0,2.82190430954022,7.00238729483548,2.98391526069709,2.49565033836969,6.0665856191035,2.83864347061082,2.10854546986884,0,2.27407504055985,0,0.664225598535437,0,0.347534457872331,0.979005787313703,0.343143423810856,0,0,0,0,1.66435439510497,0,1.24053903909388,0.306923946576125,1.12264037773229,0.384417447767103,1.53512174720011,0.64341568457443,4.45254199334973,0.154209693802656,0.177561725313127,0.164254312027618,0,0.464841513839837,0,0,0,0.34444334449382,0.546273504020151,0.655622074797121,0,0.0770153371044148,0,0,0,2.27466768141793,0,1.51141141271498,3.08454505380579,0,1.50506932156456,0,0,0,0,0,0,0.328014645699706,0,0.412164046590889,0,0,0,0,0,0.290012154876366,0.770243085573222,0.614014698904518,0,0.966782203814463,0.870100163485371,0.511359764496605,0,0,0,0,0,1.39453664789186,1.5740617341532,0.6970372701606,0,0,0.869932992075073,0.18532421910392,0.286249773483982,0.372158369359667,0.316379424718726,2.09693213316207,0.255897791311334,1.28381696410176,0.636406495851874,0,0.179872457583315,0.823611089208164,0.117812402345686,0.202182481573316,0,0,0.48763373908959,0.487426979262569,3.16950440270266,0.409499734223957,0.141405431953713,0,3.30819206127675,0,2.19225442626881,2.31510213706675,1.9676842561399,0.202910376962704,0,0.281695602532241,0.143411352204052,0.196498082026242,0.35667105148125,0,5.06658324714394,3.29294892959902,0,0.699869440489966,0,0,0,0.0941438007767792,0,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.423347165447766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270455678475983,0,0,0,0,0,0,0,0,0,0,0,0,0.333926115068718,0,0,0.19924798825107,0,0,0.102268682502155,0,0.311039587661807,0.179736702294654,0,0,0.394573622547734,0,0,0,0,0,0.520855522170466,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.461701551022782,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0.067401132980677,0,0,0,0.19566461893209,0,0,0,0,0.505492637027904,0,0,0.664653872707185,0.330991955875499,0.313932918407225,0,0,0,0,0,0,0.34945333648406,0,0,0,0,0.290967049465258,0,0.225980740780532,0,0,0,0,0.320635281006135,0,0.799238438328521,0.144090417154106,0,0,0,0,0,0,0,0.101998217636322,0,0,0,0,0,0,0,0,0,0.199679000498991,0.429226048136571,0.223171457441873,0.0671834724867263,2.16179930125442,0,0.0787831823072236,0.0824158583811665,0,0,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0.157363764404994,0,0,0,0,0,0,1.62899880526114,5.18532894720761,2.61269888087527,0,0.082092520749339,0,0.453248366080503,1.31897010310274,0,0,0,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138348634936231,0.249960815924213,0,0,0.705797459094515,0,0,0.298509605773748,0,0,0.189403005275089,1.50940741051545,2.66943366478961,0,0.151230923763239,0.310874401165561,0,0,0,0.155262956876259,0.829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| ||
|short_description=p@chr17:38613261..38613276,+ | |short_description=p@chr17:38613261..38613276,+ | ||
}} | }} |
Latest revision as of 16:28, 25 July 2015
Short description: | p@chr17:38613261..38613276, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr17:38613261..38613276, + |
Coexpression cluster: | C353_tenocyte_Nucleus_Chondrocyte_Anulus_Fibroblast_Synoviocyte_tridermal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fat cell | 1.29e-09 | 15 |
fibrocyte | 1.49e-09 | 3 |
tendon cell | 1.49e-09 | 3 |
nucleus pulposus cell of intervertebral disc | 3.04e-09 | 3 |
subcutaneous fat cell | 2.09e-08 | 3 |
receptor cell | 1.47e-07 | 6 |
sensory epithelial cell | 1.47e-07 | 6 |
olfactory epithelial cell | 1.47e-07 | 6 |
annulus pulposus cell | 8.56e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
articulation | 6.94e-17 | 8 |
skeletal joint | 6.94e-17 | 8 |
articular system | 6.94e-17 | 8 |
intervertebral cartilage | 2.31e-14 | 5 |
symphysis | 2.31e-14 | 5 |
nonsynovial joint | 2.31e-14 | 5 |
fibrous joint | 2.31e-14 | 5 |
cartilaginous joint | 2.31e-14 | 5 |
developing mesenchymal condensation | 2.31e-14 | 5 |
pre-cartilage condensation | 2.31e-14 | 5 |
cartilaginous condensation | 2.31e-14 | 5 |
cartilage element | 2.31e-14 | 5 |
post-cranial axial skeletal system | 2.31e-14 | 5 |
vertebral column | 2.31e-14 | 5 |
intervertebral disk | 2.31e-14 | 5 |
intervertebral joint | 2.31e-14 | 5 |
dense regular connective tissue | 1.49e-09 | 3 |
tendon | 1.49e-09 | 3 |
regular connective tissue | 1.49e-09 | 3 |
nucleus pulposus | 3.04e-09 | 3 |
axial mesoderm | 3.04e-09 | 3 |
notochord | 3.04e-09 | 3 |
chordamesoderm | 3.04e-09 | 3 |
adipose tissue | 2.01e-08 | 14 |
subcutaneous adipose tissue | 2.09e-08 | 3 |
subdivision of skeletal system | 1.14e-07 | 16 |
annulus fibrosus | 8.56e-07 | 2 |
fibrocartilage | 8.56e-07 | 2 |
annulus fibrosus disci intervertebralis | 8.56e-07 | 2 |
perirenal fat | 8.80e-07 | 2 |
subdivision of trunk | 9.28e-07 | 112 |
Ontology term | p-value | n |
---|---|---|
cell type benign neoplasm | 6.98e-09 | 3 |
leiomyoma | 6.98e-09 | 3 |
benign neoplasm | 9.72e-07 | 4 |