FFCP PHASE1:Hg19::chr17:38613046..38613073,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr17:38613046..38613073,- | |||
|coexpression_cluster_id=C353 | |||
|description=CAGE_peak_at_chr17:38613046..38613073,- | |description=CAGE_peak_at_chr17:38613046..38613073,- | ||
|id=chr17:38613046..38613073,- | |id=chr17:38613046..38613073,- | ||
|ontology_enrichment_celltype=CL:0000055!7.27e-16!180;CL:0000057!3.18e-13!75;CL:0000222!7.77e-11!119;CL:0000183!8.14e-09!59;CL:0000680!1.67e-07!57;CL:0000056!1.67e-07!57;CL:0000355!1.67e-07!57;CL:0000630!4.10e-07!9;CL:0000187!4.25e-07!54 | |ontology_enrichment_celltype=CL:0000055!7.27e-16!180;CL:0000057!3.18e-13!75;CL:0000222!7.77e-11!119;CL:0000183!8.14e-09!59;CL:0000680!1.67e-07!57;CL:0000056!1.67e-07!57;CL:0000355!1.67e-07!57;CL:0000630!4.10e-07!9;CL:0000187!4.25e-07!54 | ||
|ontology_enrichment_celltype_v019=CL:0000153;9.64e-10;9!CL:0000447;9.64e-10;9!CL:0000135;2.35e-08;3!CL:0000388;2.35e-08;3!CL:0002564;2.92e-08;3!CL:0000327;2.24e-07;15!CL:0000499;5.16e-07;28!CL:0000138;7.35e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.11e-11,76;CL:0000153,9.63e-10,9;CL:0000447,9.63e-10,9;CL:0000135,2.11e-08,3;CL:0000388,2.11e-08,3;CL:0002564,2.32e-08,3;CL:0000327,2.18e-07,15;CL:0000499,4.90e-07,28;CL:0000058,7.36e-07,6;CL:0000138,7.36e-07,6 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005256!1.21e-08!143;UBERON:0002049!4.46e-08!79;UBERON:0007798!4.46e-08!79;UBERON:0000914!1.24e-07!83;UBERON:0002329!1.24e-07!83;UBERON:0003077!1.24e-07!83;UBERON:0003059!1.24e-07!83;UBERON:0007282!1.24e-07!83;UBERON:0009618!1.24e-07!83;UBERON:0007285!1.24e-07!83;UBERON:0002385!2.28e-07!63;UBERON:0001015!2.28e-07!63;UBERON:0000383!2.28e-07!63;UBERON:0000490!3.59e-07!138;UBERON:0001134!5.70e-07!61;UBERON:0002036!5.70e-07!61;UBERON:0003082!5.70e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0004905;3.43e-15;8!UBERON:0000982;3.43e-15;8!UBERON:0004770;3.43e-15;8!UBERON:0011135;7.84e-13;5!UBERON:0002216;7.84e-13;5!UBERON:0011134;7.84e-13;5!UBERON:0002209;7.84e-13;5!UBERON:0002213;7.84e-13;5!UBERON:0007844;7.84e-13;5!UBERON:0011138;7.84e-13;5!UBERON:0001130;7.84e-13;5!UBERON:0001066;7.84e-13;5!UBERON:0001468;7.84e-13;5!UBERON:0000075;1.17e-08;16!UBERON:0007846;2.35e-08;3!UBERON:0000043;2.35e-08;3!UBERON:0007845;2.35e-08;3!UBERON:0002242;2.92e-08;3!UBERON:0003513;1.41e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004905,2.95e-15,8;UBERON:0000982,2.95e-15,8;UBERON:0004770,2.95e-15,8;UBERON:0011135,6.61e-13,5;UBERON:0002216,6.61e-13,5;UBERON:0011134,6.61e-13,5;UBERON:0002209,6.61e-13,5;UBERON:0002213,6.61e-13,5;UBERON:0005856,6.61e-13,5;UBERON:0005866,6.61e-13,5;UBERON:0005863,6.61e-13,5;UBERON:0007844,6.61e-13,5;UBERON:0011138,6.61e-13,5;UBERON:0001130,6.61e-13,5;UBERON:0001066,6.61e-13,5;UBERON:0001468,6.61e-13,5;UBERON:0000075,8.24e-09,16;UBERON:0007846,2.11e-08,3;UBERON:0000043,2.11e-08,3;UBERON:0007845,2.11e-08,3;UBERON:0002242,2.32e-08,3;UBERON:0003068,2.32e-08,3;UBERON:0002328,2.32e-08,3;UBERON:0004880,2.32e-08,3;UBERON:0003513,2.41e-07,7 | |||
|phase1_expression=1.99846217197612,1.71280419112787,0.986680828671798,0,0.893922188854576,4.36169262050184,2.53299878168311,0.631719873426831,1.04474251279935,0,0,0,0,3.09415882400117,5.96515276310248,0,0.602694528023977,0.730310090387373,0,0,0.816002764977012,0,0,0,0.502170558379211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223915474239924,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.06014813338393,3.00802746381534,15.9331170856906,0,1.45990461090791,0,0.443458794925128,0.790513071238134,0.196468613246569,0,0,0,0,0,0,0,0,0,0.860234595106124,0,0,1.25849830862972,0.825354125820202,0.417989933073621,0,0,0,0.402829317109147,0,0.488124115096339,0,0,0.17859945656816,0.673588117878509,0,0,0,0.732806975721629,0,0,0,0.993943903390637,0.379891534993739,0.132409180813219,0.860509862246441,1.06400514659507,1.68203280042692,0,0.49333509683432,0,0,0.163461903113459,0.151357427644931,0.576175924479999,0,1.24864030732128,0,1.79338416662161,0,0,0,0.204154171254893,0.737005903870608,1.23990937410919,1.18800285728205,2.96720315134268,0,0.718618141816238,0,0.125118519871964,0,0.438977620880838,2.75839016219118,1.95309476578576,0.680593098960126,1.61450672119976,0,0.635795703478686,1.50045548042201,0.103052529238439,1.28820270022815,0.18611685633159,0.168776332241266,0,1.51460264546469,1.19664868234989,0.323292113637624,1.42003837006646,0.10075209822764,0.508681776931463,0,0,0.286804595389004,0.121973706129595,0.132529768321485,0,0,0,0,0,0.643240938192885,0,0.464367928031979,1.44375896333917,0,0,0.241011029883482,0,0.217879444092406,0,0,0,0,2.21446636387394,1.40241773803446,0,0,0,0.982827216677626,0,0,0.245976877086227,0.171567810298526,0,0,0.100528972411631,0.0925884451585296,0.325808305310325,2.07986957055916,2.88662684050547,0,0,0,0.462985512576611,0.951270761172991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.71072446022705,0,0,0,0.112131084345361,0,0.1466765716419,0,0,0,0.531876233169741,1.04007436911366,0,1.41849132023278,2.93064396917709,0.142977993658148,0.542621605391443,2.46972101034231,0.65147236858747,0.355391948742546,3.16780749173372,0,0,1.29964888536674,0,0,0,0.239624855491583,0,0,0.289562613335158,2.4657158706046,0,0,0,0,0,0,0,0,0,0.637938751653163,0,0,0,2.57652132610194,21.5073324055661,2.98391526069709,2.70362119990049,3.21172179834891,4.57337003598411,0.585707074963566,0.300946099727719,0,3.10419213877515,0.664225598535437,0.921845842708516,0.781952530212746,1.37060810223918,0.343143423810856,0,0,0,0,0,0.604780586659361,0.248107807818777,0,1.96462066103151,0.768834895534206,0,2.41280881715411,4.45254199334973,0.925258162815933,1.9531789784444,0.0821271560138091,1.03850885836724,0.464841513839837,0,0,0.276242966807689,0.34444334449382,0.182091168006717,0.655622074797121,0,0,0,0,0,2.27466768141793,0.340187410553031,0.215915916102139,1.54227252690289,0.270946437543853,2.50844886927427,0,0,0.223874754722178,0,0,0,0,0,0.515205058238611,0,0,0,0,3.21367859688319,0.676695028044854,0.770243085573222,1.68854042198743,0.137836572484531,0.322260734604821,1.59518363305651,1.02271952899321,0.0890320356467374,0,0,0,0,2.78907329578371,4.09256050879832,0,0.308033580176089,0,0,0.74129687641568,0.429374660225974,0.744316738719335,0.632758849437452,1.5250415513906,0.255897791311334,0,1.59101623962968,0.78494864019923,0,0.274537029736055,0.235624804691373,0.202182481573316,0,0.842516912477962,0.48763373908959,1.46228093778771,1.05650146756755,0.409499734223957,0.848432591722276,0,1.10273068709225,0.66343897524122,0.438450885253763,0,1.31178950409327,0,0,0,0,0.0982490410131212,0,0,10.5553817648832,9.87884678879706,0,1.39973888097993,0,0,2.17781969722645,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199579371432817,0,0.211673582723883,0,0,0,0,0,1.01575066680962,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37428108081644,0,0.121360521749513,0,0,0,0,0,0,0,0.111308705022906,0,0.211125408127993,0.597743964753209,0.276283915531148,0,0.102268682502155,0,0.311039587661807,0,0,0,0.197286811273867,0,0,0,0,0,0,0,0.724999575434793,0,0,0.236387681767936,0,1.16641845353302,0,0,0,0,0,0,0,0,0,0.307801034015188,0.113942055847001,0,0,0,0,0,0,0,0.156980256395025,0,0,0,0.167821586975843,0,0,0,0,0,0,1.99052386215701,0,0.611030144933625,0,0,0,0.067401132980677,0.802577647298789,0,0,0,0,0,1.20990716048664,0,0.947798694427319,0,0,0,0,0,0,0,0,0,0,0.0870592065804026,0.34945333648406,0,0,0,0,0,0,0.451961481561065,0,0,0,0,0.0801588202515337,0,0.599428828746391,0,0,0,0,0,0,0,0,0.101998217636322,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,3.24269895188163,0,0.315132729228895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.209818352539992,0,0,0,0,0,0,2.71499800876856,0.864221491201268,2.28611152076586,0,0.164185041498678,0.170388021785422,0.226624183040251,0.439656701034247,0,0,0,0,0,0,0.157204305099666,0.828478110694391,0.496166021811951,0,0,0,0,0,0,0,0,0,0,0,0.573409195690071,0,0,0,0.249960815924213,0,0,0.470531639396343,0,0,0.59701921154749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| ||
|short_description=p@chr17:38613046..38613073,- | |short_description=p@chr17:38613046..38613073,- | ||
}} | }} |
Latest revision as of 16:28, 25 July 2015
Short description: | p@chr17:38613046..38613073, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr17:38613046..38613073, - |
Coexpression cluster: | C353_tenocyte_Nucleus_Chondrocyte_Anulus_Fibroblast_Synoviocyte_tridermal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.11e-11 | 76 |
GAG secreting cell | 9.63e-10 | 9 |
carbohydrate secreting cell | 9.63e-10 | 9 |
fibrocyte | 2.11e-08 | 3 |
tendon cell | 2.11e-08 | 3 |
nucleus pulposus cell of intervertebral disc | 2.32e-08 | 3 |
extracellular matrix secreting cell | 2.18e-07 | 15 |
stromal cell | 4.90e-07 | 28 |
chondroblast | 7.36e-07 | 6 |
chondrocyte | 7.36e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
articulation | 2.95e-15 | 8 |
skeletal joint | 2.95e-15 | 8 |
articular system | 2.95e-15 | 8 |
intervertebral cartilage | 6.61e-13 | 5 |
symphysis | 6.61e-13 | 5 |
nonsynovial joint | 6.61e-13 | 5 |
fibrous joint | 6.61e-13 | 5 |
cartilaginous joint | 6.61e-13 | 5 |
developing mesenchymal condensation | 6.61e-13 | 5 |
pre-cartilage condensation | 6.61e-13 | 5 |
cartilaginous condensation | 6.61e-13 | 5 |
cartilage element | 6.61e-13 | 5 |
post-cranial axial skeletal system | 6.61e-13 | 5 |
vertebral column | 6.61e-13 | 5 |
intervertebral disk | 6.61e-13 | 5 |
intervertebral joint | 6.61e-13 | 5 |
subdivision of skeletal system | 8.24e-09 | 16 |
dense regular connective tissue | 2.11e-08 | 3 |
tendon | 2.11e-08 | 3 |
regular connective tissue | 2.11e-08 | 3 |
nucleus pulposus | 2.32e-08 | 3 |
axial mesoderm | 2.32e-08 | 3 |
notochord | 2.32e-08 | 3 |
chordamesoderm | 2.32e-08 | 3 |
trunk blood vessel | 2.41e-07 | 7 |