FFCP PHASE1:Hg19::chr20:62369476..62369487,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=54923 | |EntrezGene=54923 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26016 | |HGNC=26016 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-70bp_to_ENST00000494776_5end | |association_with_transcript=-70bp_to_ENST00000494776_5end | ||
|cluster_id=chr20:62369476..62369487,+ | |||
|coexpression_cluster_id=C55 | |||
|description=CAGE_peak_7_at_LIME1_5end | |description=CAGE_peak_7_at_LIME1_5end | ||
|id=chr20:62369476..62369487,+ | |id=chr20:62369476..62369487,+ | ||
|ontology_enrichment_celltype=CL:0000542!1.24e-14!53;CL:0000051!1.24e-14!53;CL:0000838!1.18e-13!52;CL:0000084!9.66e-11!25;CL:0000827!9.66e-11!25;CL:0000791!1.24e-09!18;CL:0000789!1.24e-09!18;CL:0002420!1.24e-09!18;CL:0002419!1.24e-09!18;CL:0000790!1.24e-09!18;CL:0000625!2.63e-08!11 | |ontology_enrichment_celltype=CL:0000542!1.24e-14!53;CL:0000051!1.24e-14!53;CL:0000838!1.18e-13!52;CL:0000084!9.66e-11!25;CL:0000827!9.66e-11!25;CL:0000791!1.24e-09!18;CL:0000789!1.24e-09!18;CL:0002420!1.24e-09!18;CL:0002419!1.24e-09!18;CL:0000790!1.24e-09!18;CL:0000625!2.63e-08!11 | ||
|ontology_enrichment_celltype_v019=CL:0000182;2.15e-44;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,2.03e-44,12;CL:0000223,1.02e-09,58 | |||
|ontology_enrichment_development_v019=UBERON:0004161;2.39e-48;11!UBERON:0009497;4.78e-41;13!UBERON:0001041;3.20e-18;30!UBERON:0003104;1.82e-17;31!CL:0000223;3.47e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:7;8.33e-09;39 | |||
|ontology_enrichment_disease_v019_2=DOID:7,2.02e-08,39 | |||
|ontology_enrichment_uberon=UBERON:0005057!3.29e-07!26 | |||
|ontology_enrichment_uberon_v019=UBERON:0002107;1.21e-43;19!UBERON:0006925;1.21e-43;19!UBERON:0002423;2.39e-33;25!UBERON:0002365;5.45e-25;31!UBERON:0002330;5.45e-25;31!UBERON:0002368;5.49e-25;33!UBERON:0000949;8.00e-17;43!UBERON:0005172;9.54e-10;52!UBERON:0005173;9.54e-10;52!UBERON:0002530;1.57e-09;57!UBERON:0002417;3.40e-09;58!UBERON:0000916;3.40e-09;58 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,1.21e-43,19;UBERON:0006925,1.21e-43,19;UBERON:0008836,1.21e-43,19;UBERON:0008835,8.52e-38,22;UBERON:0003894,8.52e-38,22;UBERON:0009854,3.48e-36,23;UBERON:0007499,2.39e-33,25;UBERON:0009497,2.39e-33,25;UBERON:0000015,2.39e-33,25;UBERON:0002423,2.39e-33,25;UBERON:0006235,2.39e-33,25;UBERON:0004161,2.39e-33,25;UBERON:0009856,4.31e-32,26;UBERON:0002365,5.02e-27,31;UBERON:0002330,5.02e-27,31;UBERON:0002368,5.19e-24,35;UBERON:0000949,8.25e-19,45;UBERON:0003929,9.10e-16,54;UBERON:0005172,9.10e-16,54;UBERON:0005173,9.10e-16,54;UBERON:0002530,1.78e-14,59;UBERON:0002417,3.05e-14,60;UBERON:0000916,3.05e-14,60;UBERON:0005911,1.51e-10,82;UBERON:0001041,5.77e-10,87;UBERON:0005177,1.22e-08,101;UBERON:0009569,7.95e-08,112;UBERON:0003914,1.66e-07,117;UBERON:0004921,2.19e-07,118;UBERON:0005256,3.27e-07,122 | |||
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| ||
|short_description=p7@LIME1 | |short_description=p7@LIME1 | ||
}} | }} |
Latest revision as of 14:07, 17 September 2015
Short description: | p7@LIME1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_LIME1_5end |
Coexpression cluster: | C55_hepatocellular_Intestinal_liver_Prostate_fibrosarcoma_Hepatocyte_hepatoblastoma |
Association with transcript: | -70bp_to_ENST00000494776_5end |
EntrezGene: | LIME1 |
HGNC: | 26016 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 2.03e-44 | 12 |
endodermal cell | 1.02e-09 | 58 |
Ontology term | p-value | n |
---|---|---|
liver | 1.21e-43 | 19 |
digestive gland | 1.21e-43 | 19 |
liver bud | 1.21e-43 | 19 |
hepatic diverticulum | 8.52e-38 | 22 |
liver primordium | 8.52e-38 | 22 |
digestive tract diverticulum | 3.48e-36 | 23 |
epithelial sac | 2.39e-33 | 25 |
epithelium of foregut-midgut junction | 2.39e-33 | 25 |
anatomical boundary | 2.39e-33 | 25 |
hepatobiliary system | 2.39e-33 | 25 |
foregut-midgut junction | 2.39e-33 | 25 |
septum transversum | 2.39e-33 | 25 |
sac | 4.31e-32 | 26 |
exocrine gland | 5.02e-27 | 31 |
exocrine system | 5.02e-27 | 31 |
endocrine gland | 5.19e-24 | 35 |
endocrine system | 8.25e-19 | 45 |
gut epithelium | 9.10e-16 | 54 |
abdomen element | 9.10e-16 | 54 |
abdominal segment element | 9.10e-16 | 54 |
gland | 1.78e-14 | 59 |
abdominal segment of trunk | 3.05e-14 | 60 |
abdomen | 3.05e-14 | 60 |
endo-epithelium | 1.51e-10 | 82 |
foregut | 5.77e-10 | 87 |
trunk region element | 1.22e-08 | 101 |
subdivision of trunk | 7.95e-08 | 112 |
epithelial tube | 1.66e-07 | 117 |
subdivision of digestive tract | 2.19e-07 | 118 |
trunk mesenchyme | 3.27e-07 | 122 |
Ontology term | p-value | n |
---|---|---|
disease of anatomical entity | 2.02e-08 | 39 |