FFCP PHASE1:Hg19::chr17:10020561..10020571,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr17:10020561..10020571,- | |||
|coexpression_cluster_id=C40 | |||
|description=CAGE_peak_at_chr17:10020561..10020571,- | |description=CAGE_peak_at_chr17:10020561..10020571,- | ||
|id=chr17:10020561..10020571,- | |id=chr17:10020561..10020571,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000817;1.33e-29;1!CL:0002586;1.09e-10;3!CL:0000149;2.43e-08;4!CL:0000243;1.29e-07;15!CL:0000125;1.29e-07;15!CL:0000095;6.57e-07;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0000817,8.17e-11,3;CL:0002586,9.90e-11,3;CL:0000149,2.26e-08,4;CL:0000243,1.29e-07,15;CL:0000125,1.29e-07,15;CL:0000030,1.29e-07,15;CL:0000339,1.29e-07,15;CL:0000095,6.57e-07,17;CL:0000123,6.57e-07,17 | |||
|ontology_enrichment_development_v019=UBERON:0003056;1.64e-38;3!UBERON:0006238;2.98e-11;10!CL:0000339;1.29e-07;15 | |||
|ontology_enrichment_disease=DOID:3371!6.16e-09!1;DOID:4549!6.16e-09!1;DOID:5861!6.16e-09!1;DOID:6496!6.16e-09!1 | |ontology_enrichment_disease=DOID:3371!6.16e-09!1;DOID:4549!6.16e-09!1;DOID:5861!6.16e-09!1;DOID:6496!6.16e-09!1 | ||
|ontology_enrichment_disease_v019=DOID:3093;2.13e-10;11 | |||
|ontology_enrichment_disease_v019_2=DOID:3093,2.13e-10,11 | |||
|ontology_enrichment_uberon=UBERON:0005743!1.73e-18!86;UBERON:0003056!9.56e-18!61;UBERON:0003296!1.05e-17!4;UBERON:0010133!1.05e-17!4;UBERON:0000073!1.70e-16!94;UBERON:0001016!1.70e-16!94;UBERON:0001905!2.53e-16!2;UBERON:0002757!2.53e-16!2;UBERON:0010134!2.53e-16!2;UBERON:0002784!2.53e-16!2;UBERON:0005408!2.53e-16!2;UBERON:0001899!2.53e-16!2;UBERON:0002780!1.02e-15!41;UBERON:0001890!1.02e-15!41;UBERON:0006240!1.02e-15!41;UBERON:0003080!2.58e-15!42;UBERON:0000955!4.43e-15!69;UBERON:0006238!4.43e-15!69;UBERON:0000966!1.36e-14!5;UBERON:0005388!1.36e-14!5;UBERON:0001802!1.36e-14!5;UBERON:0001017!1.59e-14!82;UBERON:0003075!4.89e-14!86;UBERON:0007284!4.89e-14!86;UBERON:0000349!1.21e-13!5;UBERON:0007023!2.57e-13!115;UBERON:0002346!2.63e-13!90;UBERON:0001049!6.13e-11!57;UBERON:0005068!6.13e-11!57;UBERON:0006241!6.13e-11!57;UBERON:0007135!6.13e-11!57;UBERON:0002619!8.27e-11!22;UBERON:0002616!1.60e-10!59;UBERON:0000033!1.72e-10!123;UBERON:0001894!2.39e-10!7;UBERON:0006222!2.39e-10!7;UBERON:0001869!6.81e-10!32;UBERON:0000153!6.99e-10!129;UBERON:0007811!6.99e-10!129;UBERON:0002791!1.40e-09!33;UBERON:0000956!1.66e-09!25;UBERON:0000203!1.66e-09!25;UBERON:0002020!2.77e-09!34;UBERON:0003528!2.77e-09!34;UBERON:0001893!2.77e-09!34;UBERON:0001154!6.65e-09!1;UBERON:0001153!6.65e-09!1;UBERON:0002902!1.13e-08!1;UBERON:0009899!1.13e-08!1;UBERON:0002581!1.78e-08!1;UBERON:0001882!1.91e-08!1;UBERON:0005403!1.91e-08!1;UBERON:0001950!2.05e-08!20;UBERON:0004121!5.40e-08!169;UBERON:0000924!9.59e-08!173;UBERON:0006601!9.59e-08!173 | |||
|ontology_enrichment_uberon_v019=UBERON:0000966;4.20e-51;5!UBERON:0005388;4.20e-51;5!UBERON:0001802;4.20e-51;5!UBERON:0000970;4.19e-23;20!UBERON:0002104;4.92e-22;21!UBERON:0000020;3.57e-20;23!UBERON:0001032;2.33e-19;24!UBERON:0004456;2.33e-19;24!UBERON:0001905;2.37e-15;2!UBERON:0002757;2.37e-15;2!UBERON:0010134;2.37e-15;2!UBERON:0005408;2.37e-15;2!UBERON:0001899;2.37e-15;2!UBERON:0000019;4.23e-14;19!UBERON:0000047;4.23e-14;19!UBERON:0004088;4.23e-14;19!UBERON:0010230;4.23e-14;19!UBERON:0001456;7.89e-13;21!UBERON:0001781;1.09e-10;3!UBERON:0001782;1.09e-10;3!UBERON:0003296;2.43e-08;4!UBERON:0010133;2.43e-08;4!UBERON:0002784;2.43e-08;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000966,7.48e-43,6;UBERON:0005388,7.48e-43,6;UBERON:0001802,7.48e-43,6;UBERON:0000970,4.66e-22,21;UBERON:0002104,4.66e-22,21;UBERON:0000020,2.22e-19,24;UBERON:0001032,2.22e-19,24;UBERON:0004456,2.22e-19,24;UBERON:0001905,2.74e-15,2;UBERON:0002757,2.74e-15,2;UBERON:0010134,2.74e-15,2;UBERON:0005408,2.74e-15,2;UBERON:0001899,2.74e-15,2;UBERON:0000019,1.84e-13,20;UBERON:0000047,1.84e-13,20;UBERON:0010312,1.84e-13,20;UBERON:0004088,1.84e-13,20;UBERON:0010230,1.84e-13,20;UBERON:0003072,1.84e-13,20;UBERON:0004128,1.84e-13,20;UBERON:0003071,1.84e-13,20;UBERON:0001456,2.64e-12,22;UBERON:0001782,9.90e-11,3;UBERON:0005424,9.90e-11,3;UBERON:0005085,6.17e-09,31;UBERON:0001781,2.26e-08,4;UBERON:0003296,2.61e-08,4;UBERON:0010133,2.61e-08,4;UBERON:0002784,2.61e-08,4;UBERON:0003056,9.09e-08,61 | |||
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|short_description=p@chr17:10020561..10020571,- | |short_description=p@chr17:10020561..10020571,- | ||
}} | }} |
Latest revision as of 13:38, 25 July 2015
Short description: | p@chr17:10020561..10020571, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr17:10020561..10020571, - |
Coexpression cluster: | C40_eye_retina_Lens_pineal_tongue_retinoblastoma_small |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
precursor B cell | 8.17e-11 | 3 |
retinal pigment epithelial cell | 9.90e-11 | 3 |
visual pigment cell | 2.26e-08 | 4 |
glial cell (sensu Vertebrata) | 1.29e-07 | 15 |
glial cell | 1.29e-07 | 15 |
glioblast | 1.29e-07 | 15 |
glioblast (sensu Vertebrata) | 1.29e-07 | 15 |
neuron associated cell | 6.57e-07 | 17 |
neuron associated cell (sensu Vertebrata) | 6.57e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
retina | 7.48e-43 | 6 |
photoreceptor array | 7.48e-43 | 6 |
posterior segment of eyeball | 7.48e-43 | 6 |
eye | 4.66e-22 | 21 |
visual system | 4.66e-22 | 21 |
sense organ | 2.22e-19 | 24 |
sensory system | 2.22e-19 | 24 |
entire sense organ system | 2.22e-19 | 24 |
pineal body | 2.74e-15 | 2 |
regional part of epithalamus | 2.74e-15 | 2 |
secretory circumventricular organ | 2.74e-15 | 2 |
circumventricular organ | 2.74e-15 | 2 |
epithalamus | 2.74e-15 | 2 |
camera-type eye | 1.84e-13 | 20 |
simple eye | 1.84e-13 | 20 |
immature eye | 1.84e-13 | 20 |
ocular region | 1.84e-13 | 20 |
eyeball of camera-type eye | 1.84e-13 | 20 |
optic cup | 1.84e-13 | 20 |
optic vesicle | 1.84e-13 | 20 |
eye primordium | 1.84e-13 | 20 |
face | 2.64e-12 | 22 |
pigmented layer of retina | 9.90e-11 | 3 |
presumptive retinal pigmented epithelium | 9.90e-11 | 3 |
ectodermal placode | 6.17e-09 | 31 |
layer of retina | 2.26e-08 | 4 |
gland of diencephalon | 2.61e-08 | 4 |
neuroendocrine gland | 2.61e-08 | 4 |
regional part of diencephalon | 2.61e-08 | 4 |
pre-chordal neural plate | 9.09e-08 | 61 |
Ontology term | p-value | n |
---|---|---|
nervous system cancer | 2.13e-10 | 11 |