FFCP PHASE1:Hg19::chr20:36694364..36694380,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=58490 | |EntrezGene=58490 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=16209 | |HGNC=16209 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-90bp_to_uc002xhp.3_5end | |association_with_transcript=-90bp_to_uc002xhp.3_5end | ||
|cluster_id=chr20:36694364..36694380,+ | |||
|coexpression_cluster_id=C5 | |||
|description=CAGE_peak_16_at_RPRD1B_5end | |description=CAGE_peak_16_at_RPRD1B_5end | ||
|id=chr20:36694364..36694380,+ | |id=chr20:36694364..36694380,+ | ||
|ontology_enrichment_celltype=CL:0000181!1.66e-11!12;CL:0000417!1.66e-11!12;CL:0000668!1.66e-11!12;CL:0000414!1.66e-11!12;CL:0000412!1.66e-11!12;CL:0000182!1.66e-11!12 | |ontology_enrichment_celltype=CL:0000181!1.66e-11!12;CL:0000417!1.66e-11!12;CL:0000668!1.66e-11!12;CL:0000414!1.66e-11!12;CL:0000412!1.66e-11!12;CL:0000182!1.66e-11!12 | ||
|ontology_enrichment_celltype_v019=CL:0000182;1.66e-25;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,1.66e-25,12 | |||
|ontology_enrichment_development_v019=UBERON:0004161;5.10e-13;11!UBERON:0009497;3.56e-11;13!UBERON:0003104;4.20e-10;31 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002107!4.65e-19!19;UBERON:0006925!4.65e-19!19;UBERON:0008836!4.65e-19!19;UBERON:0008835!1.81e-16!22;UBERON:0003894!1.81e-16!22;UBERON:0009854!9.39e-16!23;UBERON:0007499!1.70e-14!25;UBERON:0009497!1.70e-14!25;UBERON:0000015!1.70e-14!25;UBERON:0002423!1.70e-14!25;UBERON:0006235!1.70e-14!25;UBERON:0004161!1.70e-14!25;UBERON:0005057!6.13e-14!26;UBERON:0009856!6.13e-14!26;UBERON:0002365!1.09e-11!31;UBERON:0002330!1.09e-11!31;UBERON:0002368!2.37e-10!35;UBERON:0003929!2.29e-09!54;UBERON:0005172!3.49e-09!55;UBERON:0005173!3.49e-09!55;UBERON:0002530!1.52e-08!59;UBERON:0000341!2.31e-08!2;UBERON:0002417!3.01e-08!61;UBERON:0000916!3.01e-08!61;UBERON:0003127!3.08e-08!2;UBERON:0000949!4.88e-08!45 | |||
|ontology_enrichment_uberon_v019=UBERON:0002107;1.21e-43;19!UBERON:0006925;1.21e-43;19!UBERON:0002423;2.39e-33;25!UBERON:0002365;6.15e-27;31!UBERON:0002330;6.15e-27;31!UBERON:0002368;2.91e-23;33!UBERON:0000949;7.93e-17;43!UBERON:0005172;4.32e-12;52!UBERON:0005173;4.32e-12;52!UBERON:0002417;2.61e-09;58!UBERON:0000916;2.61e-09;58!UBERON:0002530;8.85e-09;57!UBERON:0001007;1.22e-08;81 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,1.21e-43,19;UBERON:0006925,1.21e-43,19;UBERON:0008836,1.21e-43,19;UBERON:0008835,8.52e-38,22;UBERON:0003894,8.52e-38,22;UBERON:0009854,3.48e-36,23;UBERON:0007499,2.39e-33,25;UBERON:0009497,2.39e-33,25;UBERON:0000015,2.39e-33,25;UBERON:0002423,2.39e-33,25;UBERON:0006235,2.39e-33,25;UBERON:0004161,2.39e-33,25;UBERON:0009856,4.31e-32,26;UBERON:0002365,5.02e-27,31;UBERON:0002330,5.02e-27,31;UBERON:0002368,5.19e-24,35;UBERON:0000949,8.25e-19,45;UBERON:0003929,9.10e-16,54;UBERON:0005172,9.10e-16,54;UBERON:0005173,9.10e-16,54;UBERON:0002530,1.78e-14,59;UBERON:0002417,3.05e-14,60;UBERON:0000916,3.05e-14,60;UBERON:0005911,1.51e-10,82;UBERON:0005256,3.69e-10,122;UBERON:0001041,5.77e-10,87;UBERON:0005177,1.22e-08,101;UBERON:0000490,1.95e-08,148;UBERON:0003104,7.94e-08,160;UBERON:0009142,7.94e-08,160;UBERON:0009569,7.95e-08,112;UBERON:0003914,1.66e-07,117;UBERON:0004921,2.19e-07,118 | |||
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|short_description=p16@RPRD1B | |short_description=p16@RPRD1B | ||
}} | }} |
Latest revision as of 02:36, 16 September 2015
Short description: | p16@RPRD1B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_16_at_RPRD1B_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | -90bp_to_uc002xhp.3_5end |
EntrezGene: | RPRD1B |
HGNC: | 16209 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 1.66e-25 | 12 |
Ontology term | p-value | n |
---|---|---|
liver | 1.21e-43 | 19 |
digestive gland | 1.21e-43 | 19 |
liver bud | 1.21e-43 | 19 |
hepatic diverticulum | 8.52e-38 | 22 |
liver primordium | 8.52e-38 | 22 |
digestive tract diverticulum | 3.48e-36 | 23 |
epithelial sac | 2.39e-33 | 25 |
epithelium of foregut-midgut junction | 2.39e-33 | 25 |
anatomical boundary | 2.39e-33 | 25 |
hepatobiliary system | 2.39e-33 | 25 |
foregut-midgut junction | 2.39e-33 | 25 |
septum transversum | 2.39e-33 | 25 |
sac | 4.31e-32 | 26 |
exocrine gland | 5.02e-27 | 31 |
exocrine system | 5.02e-27 | 31 |
endocrine gland | 5.19e-24 | 35 |
endocrine system | 8.25e-19 | 45 |
gut epithelium | 9.10e-16 | 54 |
abdomen element | 9.10e-16 | 54 |
abdominal segment element | 9.10e-16 | 54 |
gland | 1.78e-14 | 59 |
abdominal segment of trunk | 3.05e-14 | 60 |
abdomen | 3.05e-14 | 60 |
endo-epithelium | 1.51e-10 | 82 |
trunk mesenchyme | 3.69e-10 | 122 |
foregut | 5.77e-10 | 87 |
trunk region element | 1.22e-08 | 101 |
unilaminar epithelium | 1.95e-08 | 148 |
mesenchyme | 7.94e-08 | 160 |
entire embryonic mesenchyme | 7.94e-08 | 160 |
subdivision of trunk | 7.95e-08 | 112 |
epithelial tube | 1.66e-07 | 117 |
subdivision of digestive tract | 2.19e-07 | 118 |