FFCP PHASE1:Hg19::chr11:68452002..68452019,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr11:68452002..68452019,+
|short_description=p1@GAL
|description=CAGE_peak_1_at_GAL_5end
|association_with_transcript=19bp_to_NM_015973,uc001oob.2_5end
|Entre...") |
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(11 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=51083 | |EntrezGene=51083 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4114 | |HGNC=4114 | ||
|TSSclassifier=strong | |||
|UniProt=P22466 | |UniProt=P22466 | ||
|association_with_transcript=19bp_to_NM_015973,uc001oob.2_5end | |||
|cluster_id=chr11:68452002..68452019,+ | |||
|coexpression_cluster_id=C102 | |||
|description=CAGE_peak_1_at_GAL_5end | |||
|id=chr11:68452002..68452019,+ | |||
|ontology_enrichment_celltype=CL:0000066!2.43e-21!254;CL:1000449!1.01e-07!16;CL:0000071!8.17e-07!18;CL:0002546!8.17e-07!18 | |||
|ontology_enrichment_celltype_v019=CL:1000449;1.78e-08;15!CL:0000071;9.29e-08;18!CL:1000497;8.45e-07;17!CL:0002518;8.45e-07;17!CL:0002681;9.58e-07;12!CL:0002584;9.58e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,6.27e-25,253;CL:1000449,1.63e-08,15;CL:0000071,8.32e-08,18;CL:0002546,8.32e-08,18;CL:0002321,3.98e-07,250;CL:1000497,7.82e-07,17;CL:0002518,7.82e-07,17;CL:0002681,8.43e-07,12;CL:0002584,8.43e-07,12 | |||
|ontology_enrichment_development_v019=CL:0002546;9.29e-08;18 | |||
|ontology_enrichment_disease=DOID:3095!6.86e-07!22;DOID:2994!6.86e-07!22 | |||
|ontology_enrichment_disease_v019=DOID:3095;7.64e-08;22!DOID:2994;7.64e-08;22 | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,1.35e-08,143;DOID:305,6.10e-08,106;DOID:3095,6.46e-08,22;DOID:2994,6.46e-08,22 | |||
|ontology_enrichment_uberon=UBERON:0000468!1.50e-09!659;UBERON:0000464!3.41e-09!104;UBERON:0000063!4.37e-09!97;UBERON:0004119!3.29e-08!169;UBERON:0000925!3.29e-08!169;UBERON:0006595!3.29e-08!169;UBERON:0000072!5.98e-08!46;UBERON:0004921!6.25e-08!129;UBERON:0004185!6.25e-08!129;UBERON:0000080!9.56e-08!18;UBERON:0002120!9.56e-08!18;UBERON:0004875!9.56e-08!18;UBERON:0005721!9.56e-08!18;UBERON:0005754!9.56e-08!18;UBERON:0007297!9.56e-08!18;UBERON:0004211!1.01e-07!16;UBERON:0001285!1.01e-07!16;UBERON:0007684!1.01e-07!16;UBERON:0003220!1.01e-07!16;UBERON:0004208!1.01e-07!16;UBERON:0006555!1.32e-07!17;UBERON:0005103!1.32e-07!17;UBERON:0000083!1.32e-07!17;UBERON:0009201!1.32e-07!17;UBERON:0004819!1.32e-07!17;UBERON:0006553!1.32e-07!17;UBERON:0003074!1.32e-07!17;UBERON:0003060!1.32e-07!17;UBERON:0008947!1.38e-07!38;UBERON:0003258!1.38e-07!38;UBERON:0001737!1.48e-07!9;UBERON:0006554!1.49e-07!44;UBERON:0000065!1.56e-07!53;UBERON:0000922!1.80e-07!612;UBERON:0001008!4.91e-07!45;UBERON:0000064!6.26e-07!219;UBERON:0001986!8.17e-07!18;UBERON:0004638!8.17e-07!18;UBERON:0004852!8.17e-07!18;UBERON:0000467!9.11e-07!625 | |||
|ontology_enrichment_uberon_v019=UBERON:0000072;5.74e-10;37!UBERON:0001737;1.08e-08;9!UBERON:0001557;1.08e-08;9!UBERON:0006555;1.78e-08;15!UBERON:0004819;1.78e-08;15!UBERON:0001285;1.78e-08;15!UBERON:0007684;1.78e-08;15!UBERON:0000065;4.30e-08;44!UBERON:0004638;9.29e-08;18!UBERON:0001986;9.29e-08;18!UBERON:0004852;9.29e-08;18!UBERON:0000490;6.96e-07;33!UBERON:0001225;9.58e-07;12!UBERON:0008987;9.58e-07;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000072,5.87e-09,47;UBERON:0008947,8.31e-09,38;UBERON:0003258,8.31e-09,38;UBERON:0001737,1.09e-08,9;UBERON:0006554,1.24e-08,47;UBERON:0000065,1.31e-08,54;UBERON:0004211,1.63e-08,15;UBERON:0009773,1.63e-08,15;UBERON:0001231,1.63e-08,15;UBERON:0001285,1.63e-08,15;UBERON:0007684,1.63e-08,15;UBERON:0004208,1.63e-08,15;UBERON:0006555,2.26e-08,16;UBERON:0004819,2.26e-08,16;UBERON:0001008,3.34e-08,48;UBERON:0004638,8.32e-08,18;UBERON:0001986,8.32e-08,18;UBERON:0004852,8.32e-08,18;UBERON:0004119,5.55e-07,160;UBERON:0000925,5.55e-07,160;UBERON:0006595,5.55e-07,160;UBERON:0001225,8.43e-07,12;UBERON:0008987,8.43e-07,12;UBERON:0004921,8.63e-07,118 | |||
|phase1_expression=1.81678379270557,0.428201047781966,0.281908808191942,1.0007329835313,0.446961094427288,0.872338524100369,0,17.6881564559513,0.522371256399677,16.9556416186041,30.0054502228144,4.58726881473362,8.44054330331051,0,0,27.5653310045228,0.602694528023977,0,0,0.369363174230364,0.204000691244253,0,0.286235987131057,4.92747930262383,0.251085279189606,0,0,0,0,0,0,15.6301608161418,3.91567694411725,3.69754010166788,0,0,0,1.66198622559563,0,0,0,0,0,0,0,0,0,0.411167888021826,0,0,0,0,0,0.645484683583826,1.35426486594342,0,0,0,0,0.320929027076094,0,0,0.199463657621632,0,0,0.56738522469114,0,0,0.521482918420201,0,3.63239701580021,0,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,1.31692042387539,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.04841031644363,1.02290049474824,0,0,0.869079113764942,1.5905718941022,0.486634870302636,0.189069634328136,0,0.614843499851882,0.196468613246569,1.82147644146271,10.7527488407485,1.9472843619281,1.91542711029194,28.0541296694805,0,0,0,10.136882775702,8.60234595106124,4.16568601929113,1.13061588384802,31.8819571519528,26.6864500681865,3.9709043641994,0,0.35576626268671,0.66944122552934,15.3075140501476,20.5273468543998,8.29810995663776,4.77962004449629,11.3419872703446,1.96459402224975,8.98117490504679,11.3737595288155,12.2653309972707,5.69559395740877,28.0298668213523,0,0,6.54141078213801,0,0.25326102332916,0.132409180813219,0.286836620748814,2.83734705758686,12.3349072031308,0,42.6734858761687,0.933633106199299,2.02066008104532,3.92308567472301,0.454072282934794,0.576175924479999,1.64025002283658,1.87296046098192,2.2818872861778,3.58676833324323,10.0993668833638,10.5217413839285,7.86524517532592,0.204154171254893,0.245668634623536,0.309977343527296,0,0,1.82032272387605,2.15585442544872,1.0100166837244,2.00189631795143,0.831192346452549,0,0,0,1.92834711372036,0.358779271377724,0.213557388818567,0.423863802319124,7.50227740211006,2.57631323096097,0.772921620136887,1.30281799432113,2.02531598689519,2.82567314967476,0.252433774244115,0.184099797284599,0.161646056818812,15.2654124782144,6.44813428656898,2.37384829234683,1.93260853163297,7.36414525595254,3.72845974005705,104.165545034674,95.6864927281124,155.002719787938,136.728931565274,164.765515621785,84.6747473055925,0,0,1.38134921352481,0,0,160.424020854028,140.262462144981,171.117831217272,154.852737716281,147.504383650559,169.411222045323,183.909904330464,163.060037519163,175.444703567554,0.738155454624648,5.60967095213783,0.4115740113314,2.94017422771084,0,0,0,0,11.6839016615958,1.71567810298526,5.5972645558399,12.3641928583382,5.62962245505133,0.740707561268237,0,4.15973914111831,0,10.3178060427818,0.117408694235822,2.30986316417718,4.1668696131895,0.951270761172991,7.90204397959275,3.43394464837949,7.63272718870932,195.861569921542,251.186664267951,9.3733833986777,1.51183915378974,6.80520466763455,2.05984602216551,2.3250715081117,4.60059214998253,0,0,0,0,0,19.176364076235,1.14596527667483,1.17217447210047,1.71072446022705,0.411309970813294,0,0.285826432630578,0.448524337381443,0.87192013766656,0.4400297149257,0.387815147273333,0,4.22651376278,0,0,0.771622122786426,1.41849132023278,0.799266537048298,0.57191197463259,0.542621605391443,10.70212437815,3.58309802723109,0,23.7585561880029,0,0.871533458600294,0,110.677640383483,16.072226925828,35.8417697121154,0,0,0,0.868687840005475,0.410952645100767,0.358121926479791,0,0,0,0,1.01637849688985,14.3153839243384,13.9191986299985,11.2235897774014,14.6725912880228,0,0,0,0.981531933753119,3.00102312635806,0.271265023699736,0,0.535286966391485,0.157702415033935,0,0,0,1.03473071292505,0,0.921845842708516,7.81952530212746,4.50342662164303,5.83343820478455,0,0,0,23.0376954299157,9.98612637062982,3.93107381328584,0,0.153461973288062,0,0.256278298511402,1.02341449813341,0.804269605718038,1.48418066444991,0.771048469013278,0.355123450626254,0.0821271560138091,0,0.697262270759755,50.3983904797065,4.41114234667227,13.9963103182562,8.03701137152247,6.91946438425525,0.917870904715969,25.7183779357225,4.85196623757813,51.7670847656724,55.5329053682391,10.1329563737161,4.54933536283586,14.9682460643334,9.28438439239199,10.7959076883203,5.96082162596476,8.52872615553251,33.8985443149901,40.7227244375075,19.4771036608295,2.63111851975121,2.0914836081992,10.2580050046556,0.328014645699706,0.650756789328606,0.206082023295445,0.183138929636687,0,1.72279661398852,3.90036147621913,0,0.193341436584244,0.308097234229289,0.614014698904518,4.68644346447404,0.429680979473094,1.0151168573996,1.10794615640931,0.178064071293475,5.61968712227326,4.80475168412765,1.91419068741876,10.8238825515438,0,0.31481234683064,0,0,0,0,0.37064843820784,0.572499546967965,0.372158369359667,0,0.190630193923825,6.39744478278335,8.98671874871233,0.318203247925937,1.56989728039846,0,5.76527762445715,3.53437207037059,0.202182481573316,3.17020642346017,5.05510147486777,7.80213982543345,0,1.05650146756755,0.272999822815972,0.424216295861138,2.26016233240486,0,0,0,11.575510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|phase1_expression=1.81678379270557,0.428201047781966,0.281908808191942,1.0007329835313,0.446961094427288,0.872338524100369,0,17.6881564559513,0.522371256399677,16.9556416186041,30.0054502228144,4.58726881473362,8.44054330331051,0,0,27.5653310045228,0.602694528023977,0,0,0.369363174230364,0.204000691244253,0,0.286235987131057,4.92747930262383,0.251085279189606,0,0,0,0,0,0,15.6301608161418,3.91567694411725,3.69754010166788,0,0,0,1.66198622559563,0,0,0,0,0,0,0,0,0,0.411167888021826,0,0,0,0,0,0.645484683583826,1.35426486594342,0,0,0,0,0.320929027076094,0,0,0.199463657621632,0,0,0.56738522469114,0,0,0.521482918420201,0,3.63239701580021,0,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,1.31692042387539,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.04841031644363,1.02290049474824,0,0,0.869079113764942,1.5905718941022,0.486634870302636,0.189069634328136,0,0.614843499851882,0.196468613246569,1.82147644146271,10.7527488407485,1.9472843619281,1.91542711029194,28.0541296694805,0,0,0,10.136882775702,8.60234595106124,4.16568601929113,1.13061588384802,31.8819571519528,26.6864500681865,3.9709043641994,0,0.35576626268671,0.66944122552934,15.3075140501476,20.5273468543998,8.29810995663776,4.77962004449629,11.3419872703446,1.96459402224975,8.98117490504679,11.3737595288155,12.2653309972707,5.69559395740877,28.0298668213523,0,0,6.54141078213801,0,0.25326102332916,0.132409180813219,0.286836620748814,2.83734705758686,12.3349072031308,0,42.6734858761687,0.933633106199299,2.02066008104532,3.92308567472301,0.454072282934794,0.576175924479999,1.64025002283658,1.87296046098192,2.2818872861778,3.58676833324323,10.0993668833638,10.5217413839285,7.86524517532592,0.204154171254893,0.245668634623536,0.309977343527296,0,0,1.82032272387605,2.15585442544872,1.0100166837244,2.00189631795143,0.831192346452549,0,0,0,1.92834711372036,0.358779271377724,0.213557388818567,0.423863802319124,7.50227740211006,2.57631323096097,0.772921620136887,1.30281799432113,2.02531598689519,2.82567314967476,0.252433774244115,0.184099797284599,0.161646056818812,15.2654124782144,6.44813428656898,2.37384829234683,1.93260853163297,7.36414525595254,3.72845974005705,104.165545034674,95.6864927281124,155.002719787938,136.728931565274,164.765515621785,84.6747473055925,0,0,1.38134921352481,0,0,160.424020854028,140.262462144981,171.117831217272,154.852737716281,147.504383650559,169.411222045323,183.909904330464,163.060037519163,175.444703567554,0.738155454624648,5.60967095213783,0.4115740113314,2.94017422771084,0,0,0,0,11.6839016615958,1.71567810298526,5.5972645558399,12.3641928583382,5.62962245505133,0.740707561268237,0,4.15973914111831,0,10.3178060427818,0.117408694235822,2.30986316417718,4.1668696131895,0.951270761172991,7.90204397959275,3.43394464837949,7.63272718870932,195.861569921542,251.186664267951,9.3733833986777,1.51183915378974,6.80520466763455,2.05984602216551,2.3250715081117,4.60059214998253,0,0,0,0,0,19.176364076235,1.14596527667483,1.17217447210047,1.71072446022705,0.411309970813294,0,0.285826432630578,0.448524337381443,0.87192013766656,0.4400297149257,0.387815147273333,0,4.22651376278,0,0,0.771622122786426,1.41849132023278,0.799266537048298,0.57191197463259,0.542621605391443,10.70212437815,3.58309802723109,0,23.7585561880029,0,0.871533458600294,0,110.677640383483,16.072226925828,35.8417697121154,0,0,0,0.868687840005475,0.410952645100767,0.358121926479791,0,0,0,0,1.01637849688985,14.3153839243384,13.9191986299985,11.2235897774014,14.6725912880228,0,0,0,0.981531933753119,3.00102312635806,0.271265023699736,0,0.535286966391485,0.157702415033935,0,0,0,1.03473071292505,0,0.921845842708516,7.81952530212746,4.50342662164303,5.83343820478455,0,0,0,23.0376954299157,9.98612637062982,3.93107381328584,0,0.153461973288062,0,0.256278298511402,1.02341449813341,0.804269605718038,1.48418066444991,0.771048469013278,0.355123450626254,0.0821271560138091,0,0.697262270759755,50.3983904797065,4.41114234667227,13.9963103182562,8.03701137152247,6.91946438425525,0.917870904715969,25.7183779357225,4.85196623757813,51.7670847656724,55.5329053682391,10.1329563737161,4.54933536283586,14.9682460643334,9.28438439239199,10.7959076883203,5.96082162596476,8.52872615553251,33.8985443149901,40.7227244375075,19.4771036608295,2.63111851975121,2.0914836081992,10.2580050046556,0.328014645699706,0.650756789328606,0.206082023295445,0.183138929636687,0,1.72279661398852,3.90036147621913,0,0.193341436584244,0.308097234229289,0.614014698904518,4.68644346447404,0.429680979473094,1.0151168573996,1.10794615640931,0.178064071293475,5.61968712227326,4.80475168412765,1.91419068741876,10.8238825515438,0,0.31481234683064,0,0,0,0,0.37064843820784,0.572499546967965,0.372158369359667,0,0.190630193923825,6.39744478278335,8.98671874871233,0.318203247925937,1.56989728039846,0,5.76527762445715,3.53437207037059,0.202182481573316,3.17020642346017,5.05510147486777,7.80213982543345,0,1.05650146756755,0.272999822815972,0.424216295861138,2.26016233240486,0,0,0,11.575510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| ||
|short_description=p1@GAL | |||
}} | }} |
Latest revision as of 20:27, 19 September 2015
Short description: | p1@GAL |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GAL_5end |
Coexpression cluster: | C102_neuroblastoma_testicular_pituitary_carcinosarcoma_rectum_acantholytic_iPS |
Association with transcript: | 19bp_to_NM_015973, uc001oob.2_5end |
EntrezGene: | GAL |
HGNC: | 4114 |
UniProt: | P22466 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 6.27e-25 | 253 |
epithelial cell of nephron | 1.63e-08 | 15 |
blood vessel endothelial cell | 8.32e-08 | 18 |
embryonic blood vessel endothelial progenitor cell | 8.32e-08 | 18 |
embryonic cell | 3.98e-07 | 250 |
kidney cell | 7.82e-07 | 17 |
kidney epithelial cell | 7.82e-07 | 17 |
kidney cortical cell | 8.43e-07 | 12 |
renal cortical epithelial cell | 8.43e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
segment of respiratory tract | 5.87e-09 | 47 |
respiratory primordium | 8.31e-09 | 38 |
endoderm of foregut | 8.31e-09 | 38 |
larynx | 1.09e-08 | 9 |
urinary system structure | 1.24e-08 | 47 |
respiratory tract | 1.31e-08 | 54 |
nephron epithelium | 1.63e-08 | 15 |
renal tubule | 1.63e-08 | 15 |
nephron tubule | 1.63e-08 | 15 |
nephron | 1.63e-08 | 15 |
uriniferous tubule | 1.63e-08 | 15 |
nephrogenic mesenchyme | 1.63e-08 | 15 |
excretory tube | 2.26e-08 | 16 |
kidney epithelium | 2.26e-08 | 16 |
renal system | 3.34e-08 | 48 |
blood vessel endothelium | 8.32e-08 | 18 |
endothelium | 8.32e-08 | 18 |
cardiovascular system endothelium | 8.32e-08 | 18 |
endoderm-derived structure | 5.55e-07 | 160 |
endoderm | 5.55e-07 | 160 |
presumptive endoderm | 5.55e-07 | 160 |
cortex of kidney | 8.43e-07 | 12 |
renal parenchyma | 8.43e-07 | 12 |
subdivision of digestive tract | 8.63e-07 | 118 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 1.35e-08 | 143 |
carcinoma | 6.10e-08 | 106 |
germ cell and embryonal cancer | 6.46e-08 | 22 |
germ cell cancer | 6.46e-08 | 22 |