FFCP PHASE1:Hg19::chr11:60640905..60640919,+: Difference between revisions
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|id=chr11:60640905..60640919,+
|short_description=p@chr11:60640905..60640919,+
|description=CAGE_peak_at_chr11:60640905..60640919,+
|association_with_transcript=NA
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr11:60640905..60640919,+ | |||
|coexpression_cluster_id=C3169 | |||
|description=CAGE_peak_at_chr11:60640905..60640919,+ | |||
|id=chr11:60640905..60640919,+ | |||
|ontology_enrichment_celltype=CL:0000183!6.98e-16!59;CL:0000187!1.75e-14!54;CL:0000680!2.12e-13!57;CL:0000056!2.12e-13!57;CL:0000355!2.12e-13!57;CL:0000393!1.98e-12!60;CL:0000211!1.98e-12!60;CL:0000188!2.76e-11!9;CL:0002564!3.59e-08!3;CL:0000055!3.83e-08!180;CL:0000594!7.18e-08!3;CL:0002590!9.86e-08!3;CL:0000192!1.94e-07!42;CL:0000514!1.94e-07!42;CL:0000708!2.15e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0002549;9.49e-24;2!CL:0002575;8.54e-23;2!CL:0002564;3.42e-16;3!CL:0002590;1.53e-15;3!CL:0000669;6.73e-12;4!CL:0002195;9.01e-07;2!CL:0002571;9.01e-07;2!CL:0002602;9.01e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002549,1.01e-23,2;CL:0002575,3.49e-23,2;CL:0002564,3.18e-16,3;CL:0002590,1.32e-15,3;CL:0000669,4.32e-12,4;CL:0002602,7.20e-07,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019=UBERON:0005284;7.68e-36;5!UBERON:0005629;9.49e-24;2!UBERON:0005358;9.49e-24;2!UBERON:0001886;9.49e-24;2!UBERON:0004086;9.49e-24;2!UBERON:0005282;9.49e-24;2!UBERON:0005281;9.49e-24;2!UBERON:0011135;7.79e-21;5!UBERON:0002216;7.79e-21;5!UBERON:0011134;7.79e-21;5!UBERON:0002209;7.79e-21;5!UBERON:0002213;7.79e-21;5!UBERON:0007844;7.79e-21;5!UBERON:0011138;7.79e-21;5!UBERON:0001130;7.79e-21;5!UBERON:0001066;7.79e-21;5!UBERON:0001468;7.79e-21;5!UBERON:0006876;1.73e-16;11!UBERON:0002242;3.42e-16;3!UBERON:0004905;2.95e-13;8!UBERON:0000982;2.95e-13;8!UBERON:0004770;2.95e-13;8!UBERON:0000075;6.95e-07;16!UBERON:0006444;9.01e-07;2!UBERON:0001995;9.01e-07;2!UBERON:0004715;9.01e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005284,6.73e-36,5;UBERON:0005629,1.01e-23,2;UBERON:0005358,1.01e-23,2;UBERON:0001886,1.01e-23,2;UBERON:0004086,1.01e-23,2;UBERON:0005282,1.01e-23,2;UBERON:0005281,1.01e-23,2;UBERON:0011135,5.57e-21,5;UBERON:0002216,5.57e-21,5;UBERON:0011134,5.57e-21,5;UBERON:0002209,5.57e-21,5;UBERON:0002213,5.57e-21,5;UBERON:0005856,5.57e-21,5;UBERON:0005866,5.57e-21,5;UBERON:0005863,5.57e-21,5;UBERON:0007844,5.57e-21,5;UBERON:0011138,5.57e-21,5;UBERON:0001130,5.57e-21,5;UBERON:0001066,5.57e-21,5;UBERON:0001468,5.57e-21,5;UBERON:0006876,1.63e-16,11;UBERON:0002242,3.18e-16,3;UBERON:0003068,3.18e-16,3;UBERON:0002328,3.18e-16,3;UBERON:0004880,3.18e-16,3;UBERON:0004905,2.39e-13,8;UBERON:0000982,2.39e-13,8;UBERON:0004770,2.39e-13,8;UBERON:0000075,6.28e-07,16;UBERON:0006444,7.20e-07,2;UBERON:0001995,7.20e-07,2;UBERON:0004715,7.20e-07,2 | |||
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| ||
|short_description=p@chr11:60640905..60640919,+ | |||
}} | }} |
Latest revision as of 23:18, 23 July 2015
Short description: | p@chr11:60640905..60640919, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr11:60640905..60640919, + |
Coexpression cluster: | C3169_Nucleus_Fibroblast_pagetoid_Pericytes_Anulus_Mesenchymal_Skeletal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast of choroid plexus | 1.01e-23 | 2 |
central nervous system pericyte | 3.49e-23 | 2 |
nucleus pulposus cell of intervertebral disc | 3.18e-16 | 3 |
smooth muscle cell of the brain vasculature | 1.32e-15 | 3 |
pericyte cell | 4.32e-12 | 4 |
annulus pulposus cell | 7.20e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
brain vasculature | 6.73e-36 | 5 |
vascular plexus | 1.01e-23 | 2 |
ventricle of nervous system | 1.01e-23 | 2 |
choroid plexus | 1.01e-23 | 2 |
brain ventricle | 1.01e-23 | 2 |
ventricular system of brain | 1.01e-23 | 2 |
ventricular system of central nervous system | 1.01e-23 | 2 |
intervertebral cartilage | 5.57e-21 | 5 |
symphysis | 5.57e-21 | 5 |
nonsynovial joint | 5.57e-21 | 5 |
fibrous joint | 5.57e-21 | 5 |
cartilaginous joint | 5.57e-21 | 5 |
developing mesenchymal condensation | 5.57e-21 | 5 |
pre-cartilage condensation | 5.57e-21 | 5 |
cartilaginous condensation | 5.57e-21 | 5 |
cartilage element | 5.57e-21 | 5 |
post-cranial axial skeletal system | 5.57e-21 | 5 |
vertebral column | 5.57e-21 | 5 |
intervertebral disk | 5.57e-21 | 5 |
intervertebral joint | 5.57e-21 | 5 |
vasculature of organ | 1.63e-16 | 11 |
nucleus pulposus | 3.18e-16 | 3 |
axial mesoderm | 3.18e-16 | 3 |
notochord | 3.18e-16 | 3 |
chordamesoderm | 3.18e-16 | 3 |
articulation | 2.39e-13 | 8 |
skeletal joint | 2.39e-13 | 8 |
articular system | 2.39e-13 | 8 |
subdivision of skeletal system | 6.28e-07 | 16 |
annulus fibrosus | 7.20e-07 | 2 |
fibrocartilage | 7.20e-07 | 2 |
annulus fibrosus disci intervertebralis | 7.20e-07 | 2 |