FFCP PHASE1:Hg19::chr11:2016937..2016981,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr11:2016937..2016981,+
|short_description=p@chr11:2016937..2016981,+
|description=CAGE_peak_at_chr11:2016937..2016981,+
|association_with_transcript=NA
|Entr...") |
No edit summary |
||
(10 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr11:2016937..2016981,+ | |||
|coexpression_cluster_id=C227 | |||
|description=CAGE_peak_at_chr11:2016937..2016981,+ | |||
|id=chr11:2016937..2016981,+ | |||
|ontology_enrichment_celltype=CL:0000188!8.11e-08!9 | |||
|ontology_enrichment_celltype_v019=CL:0000349;1.42e-19;19!CL:0002577;4.85e-11;3!CL:0002536;1.86e-07;2!CL:0002575;2.18e-07;2!CL:0002537;7.87e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,1.35e-19,19;CL:0002577,4.78e-11,3;CL:0002536,1.72e-07,2;CL:0002575,2.15e-07,2;CL:0002537,7.88e-07,5 | |||
|ontology_enrichment_development_v019=UBERON:0008947;6.58e-09;29!UBERON:0008814;6.10e-07;2!UBERON:0010056;6.10e-07;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005631!2.55e-15!14;UBERON:0000158!2.55e-15!14;UBERON:0001737!1.13e-13!9;UBERON:0001557!8.60e-13!19;UBERON:0000478!4.31e-12!24;UBERON:0003124!2.03e-11!7;UBERON:0003104!6.53e-08!238;UBERON:0009142!6.53e-08!238;UBERON:0001987!2.50e-07!4;UBERON:0004340!2.50e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;2.44e-27;9!UBERON:0001557;2.44e-27;9!UBERON:0000478;5.84e-21;24!UBERON:0005631;5.43e-16;10!UBERON:0000158;5.43e-16;10!UBERON:0001987;8.37e-14;4!UBERON:0000305;5.65e-12;7!UBERON:0001723;3.76e-10;3!UBERON:0001033;3.76e-10;3!UBERON:0000072;2.02e-08;37!UBERON:0005406;2.18e-07;2!UBERON:0000065;9.32e-07;44 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,2.20e-27,9;UBERON:0005631,2.42e-27,14;UBERON:0000158,2.42e-27,14;UBERON:0001557,1.31e-21,19;UBERON:0000478,5.35e-21,24;UBERON:0003124,2.87e-17,7;UBERON:0001987,7.49e-14,4;UBERON:0004340,7.49e-14,4;UBERON:0000305,5.35e-12,7;UBERON:0000072,2.07e-11,47;UBERON:0004871,1.91e-10,8;UBERON:0001723,3.38e-10,3;UBERON:0001033,3.38e-10,3;UBERON:0010056,3.38e-10,3;UBERON:0000065,1.77e-09,54;UBERON:0001041,2.23e-09,87;UBERON:0004119,3.79e-08,160;UBERON:0000925,3.79e-08,160;UBERON:0006595,3.79e-08,160;UBERON:0008947,1.06e-07,38;UBERON:0003258,1.06e-07,38;UBERON:0005406,2.08e-07,2;UBERON:0004921,3.81e-07,118;UBERON:0001004,4.74e-07,74 | |||
|phase1_expression=0.726713517082227,0.428201047781966,0.140954404095971,1.0007329835313,0.446961094427288,8.72338524100369,0,0,0,0,0.697801167972428,3.49506195408276,7.64924236862515,0.247532705920093,0.331397375727916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21079900526674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0.486634870302636,0,0,0,0.0654895377488563,0,0.741568885568859,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560677600142307,0,0,0.311211035399766,0,0.163461903113459,0.151357427644931,4.03323147135999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168336113954066,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132529768321485,0.232387885739037,0.207322110030741,0,0,0,0,0,0,0,5.20549920175313,2.02301628093722,3.37415441836875,3.97058301836618,4.79334777003293,5.69449485866632,4.98875840192608,5.101758093259,5.00171304030308,0,1.40241773803446,0,8.82052268313252,0,0,1.77236972004421,0,0,0,0,0,0,0.648119116109707,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.285955987316295,14.1081617401775,0,0,0.355391948742546,0.791951872933429,0,0,0,0,0,0,0,0,0,1.30303176000821,1.64381058040307,0.537182889719687,0,0,0,0,0,0,0,0,0,0,0,0,0.613457458595699,0.500170521059677,0.271265023699736,0,0,0,0,0.300946099727719,0,1.03473071292505,0,0,0,2.15381273209015,8.92172901908225,0,0,0,18.1876542867756,21.6366071363646,15.7242952531434,0.496215615637554,0,1.12264037773229,0.256278298511402,0,0.160853921143607,2.96836132889982,0,0,0,0,0.116210378459959,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215915916102139,3.08454505380579,0,0,0,0,0,0,0,0,0,0,0.412164046590889,0,0,0,0,0,0.193341436584244,0.154048617114644,0.921022048356777,0.827019434907183,0.107420244868274,0.290033387828457,0.681813019328807,3.29418531892928,0,0,0,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0.190630193923825,0.255897791311334,2.56763392820352,0,0,0.179872457583315,0,0,0,0,0,0.48763373908959,0,0,0,0,0,0,0,0,0,1.9676842561399,0,0.30982349809975,0,0.286822704408103,1.08073945114433,0,0,0,0,0,0.699869440489966,0,0.670302275535787,0,0.470719003883896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,31.2755275006374,20.7875276582847,26.7229810826332,0,0,0,0,0.211125408127993,0.398495976502139,0,0.503865495708552,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1137934482855,0,0.709163045303809,0,0,0,0,0,0,0,0,0,0,0,0.384751292518985,0,0,1.16684937732704,2.17294743844016,37.9611380080984,0.915975934018623,49.0391993937144,0,0.156980256395025,0,0,0,0,0,0,0,0,0,0,0,0,0.611030144933625,0,0,0,0,13.6438200040794,0,0,0,0,0,4.83962864194656,0,0,0,0,0,0,0,0,0,0,0,0,0,0.52418000472609,0,0,0,0,0,0.0882561266915003,1.12990370390266,0,0,0,0.195551382734803,0,0,29.3720126085731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0,0.199679000498991,0.858452096273142,0,0.470284307407084,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157611414598396,0.419636705079985,0,0,0,0.714695326373367,0.662091970365432,0,0,0,0,0,0,0,0,0,21.2011022259554,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.80047199927361,0.686791410365586,0.336749488765919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.345430341731199,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.86623178009892,0,0.323474434190045,0,0.54604819096007,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.35024431835981,0,0,0,0,0,0,3.40478702825849,0,0,0,0,0,0,0,0,1.48863353516788,0,0.127762427639595,0,0,0,0,3.72549954683083,0,0.171488009437418,0,0,0,0,0.078493092850514,0,0.560544326627578,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.423387050190929,1.3746412112643,0,0,0,0,0,0,0.513314034281235,6.95888658802919,1.94284397223656,0,0,0,0,0,0,0,1.09279780251979,0,0.490296643507811,0,0,0,0,0,0,0.45120521581504,0,0,0,0,1.46067277649303,0,0,0,0,0.436350690340377,2.1161073620616,0,0,1.73050624849516,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0.213233981900981,4.76128862927481,0,0,0,0.190941474834495,3.23387502333151,1.52401723527873,35.5922633128692,0.26940821205835,0,1.33064142618405,0,0,0,0,7.03922827210363,0,1.22068853494722,0,0,0 | |phase1_expression=0.726713517082227,0.428201047781966,0.140954404095971,1.0007329835313,0.446961094427288,8.72338524100369,0,0,0,0,0.697801167972428,3.49506195408276,7.64924236862515,0.247532705920093,0.331397375727916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21079900526674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0.486634870302636,0,0,0,0.0654895377488563,0,0.741568885568859,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560677600142307,0,0,0.311211035399766,0,0.163461903113459,0.151357427644931,4.03323147135999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168336113954066,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132529768321485,0.232387885739037,0.207322110030741,0,0,0,0,0,0,0,5.20549920175313,2.02301628093722,3.37415441836875,3.97058301836618,4.79334777003293,5.69449485866632,4.98875840192608,5.101758093259,5.00171304030308,0,1.40241773803446,0,8.82052268313252,0,0,1.77236972004421,0,0,0,0,0,0,0.648119116109707,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.285955987316295,14.1081617401775,0,0,0.355391948742546,0.791951872933429,0,0,0,0,0,0,0,0,0,1.30303176000821,1.64381058040307,0.537182889719687,0,0,0,0,0,0,0,0,0,0,0,0,0.613457458595699,0.500170521059677,0.271265023699736,0,0,0,0,0.300946099727719,0,1.03473071292505,0,0,0,2.15381273209015,8.92172901908225,0,0,0,18.1876542867756,21.6366071363646,15.7242952531434,0.496215615637554,0,1.12264037773229,0.256278298511402,0,0.160853921143607,2.96836132889982,0,0,0,0,0.116210378459959,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215915916102139,3.08454505380579,0,0,0,0,0,0,0,0,0,0,0.412164046590889,0,0,0,0,0,0.193341436584244,0.154048617114644,0.921022048356777,0.827019434907183,0.107420244868274,0.290033387828457,0.681813019328807,3.29418531892928,0,0,0,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0.190630193923825,0.255897791311334,2.56763392820352,0,0,0.179872457583315,0,0,0,0,0,0.48763373908959,0,0,0,0,0,0,0,0,0,1.9676842561399,0,0.30982349809975,0,0.286822704408103,1.08073945114433,0,0,0,0,0,0.699869440489966,0,0.670302275535787,0,0.470719003883896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,31.2755275006374,20.7875276582847,26.7229810826332,0,0,0,0,0.211125408127993,0.398495976502139,0,0.503865495708552,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1137934482855,0,0.709163045303809,0,0,0,0,0,0,0,0,0,0,0,0.384751292518985,0,0,1.16684937732704,2.17294743844016,37.9611380080984,0.915975934018623,49.0391993937144,0,0.156980256395025,0,0,0,0,0,0,0,0,0,0,0,0,0.611030144933625,0,0,0,0,13.6438200040794,0,0,0,0,0,4.83962864194656,0,0,0,0,0,0,0,0,0,0,0,0,0,0.52418000472609,0,0,0,0,0,0.0882561266915003,1.12990370390266,0,0,0,0.195551382734803,0,0,29.3720126085731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0,0.199679000498991,0.858452096273142,0,0.470284307407084,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157611414598396,0.419636705079985,0,0,0,0.714695326373367,0.662091970365432,0,0,0,0,0,0,0,0,0,21.2011022259554,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.80047199927361,0.686791410365586,0.336749488765919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.345430341731199,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.86623178009892,0,0.323474434190045,0,0.54604819096007,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.35024431835981,0,0,0,0,0,0,3.40478702825849,0,0,0,0,0,0,0,0,1.48863353516788,0,0.127762427639595,0,0,0,0,3.72549954683083,0,0.171488009437418,0,0,0,0,0.078493092850514,0,0.560544326627578,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.423387050190929,1.3746412112643,0,0,0,0,0,0,0.513314034281235,6.95888658802919,1.94284397223656,0,0,0,0,0,0,0,1.09279780251979,0,0.490296643507811,0,0,0,0,0,0,0.45120521581504,0,0,0,0,1.46067277649303,0,0,0,0,0.436350690340377,2.1161073620616,0,0,1.73050624849516,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0.213233981900981,4.76128862927481,0,0,0,0.190941474834495,3.23387502333151,1.52401723527873,35.5922633128692,0.26940821205835,0,1.33064142618405,0,0,0,0,7.03922827210363,0,1.22068853494722,0,0,0 | ||
|short_description=p@chr11:2016937..2016981,+ | |||
}} | }} |
Latest revision as of 20:54, 23 July 2015
Short description: | p@chr11:2016937..2016981, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr11:2016937..2016981, + |
Coexpression cluster: | C227_chorionic_amniotic_Mesenchymal_Placental_gastric_diaphragm_tongue |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 1.35e-19 | 19 |
placental epithelial cell | 4.78e-11 | 3 |
amniotic epithelial cell | 1.72e-07 | 2 |
central nervous system pericyte | 2.15e-07 | 2 |
amnion mesenchymal stem cell | 7.88e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
larynx | 2.20e-27 | 9 |
extraembryonic membrane | 2.42e-27 | 14 |
membranous layer | 2.42e-27 | 14 |
upper respiratory tract | 1.31e-21 | 19 |
extraembryonic structure | 5.35e-21 | 24 |
chorion | 2.87e-17 | 7 |
placenta | 7.49e-14 | 4 |
allantois | 7.49e-14 | 4 |
amnion | 5.35e-12 | 7 |
segment of respiratory tract | 2.07e-11 | 47 |
somatic layer of lateral plate mesoderm | 1.91e-10 | 8 |
tongue | 3.38e-10 | 3 |
gustatory system | 3.38e-10 | 3 |
future tongue | 3.38e-10 | 3 |
respiratory tract | 1.77e-09 | 54 |
foregut | 2.23e-09 | 87 |
endoderm-derived structure | 3.79e-08 | 160 |
endoderm | 3.79e-08 | 160 |
presumptive endoderm | 3.79e-08 | 160 |
respiratory primordium | 1.06e-07 | 38 |
endoderm of foregut | 1.06e-07 | 38 |
perirenal fat | 2.08e-07 | 2 |
subdivision of digestive tract | 3.81e-07 | 118 |
respiratory system | 4.74e-07 | 74 |