FFCP PHASE1:Hg19::chr19:17994670..17994681,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr19:17994670..17994681,+ | |||
|coexpression_cluster_id=C2482 | |||
|description=CAGE_peak_at_chr19:17994670..17994681,+ | |description=CAGE_peak_at_chr19:17994670..17994681,+ | ||
|id=chr19:17994670..17994681,+ | |id=chr19:17994670..17994681,+ | ||
|ontology_enrichment_celltype=CL:0000039!1.20e-63!7;CL:0000586!1.20e-63!7 | |ontology_enrichment_celltype=CL:0000039!1.20e-63!7;CL:0000586!1.20e-63!7 | ||
|ontology_enrichment_celltype_v019=CL:0000039;1.06e-77;7!CL:0000586;1.06e-77;7!CL:1000415;1.48e-12;2!CL:0000083;8.85e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,1.15e-77,7;CL:0000586,1.15e-77,7;CL:1000415,1.48e-12,2;CL:0000083,8.61e-07,4 | |||
|ontology_enrichment_development_v019=UBERON:0009117;3.79e-35;10!UBERON:0005564;3.79e-35;10 | |||
|ontology_enrichment_disease=DOID:3095!7.61e-20!22;DOID:2994!7.61e-20!22;DOID:1799!1.08e-10!1;DOID:10165!1.08e-10!1;DOID:1798!1.08e-10!1;DOID:178!3.29e-10!1;DOID:326!3.29e-10!1;DOID:3978!3.29e-10!1;DOID:3394!3.29e-10!1;DOID:5844!3.29e-10!1;DOID:0050687!9.59e-09!143;DOID:170!5.75e-07!6 | |||
|ontology_enrichment_disease_v019=DOID:3095;4.93e-25;22!DOID:2994;4.93e-25;22!DOID:1799;3.67e-23;1!DOID:10165;3.67e-23;1!DOID:1798;3.67e-23;1!DOID:4468;2.07e-12;2!DOID:305;8.91e-08;106!DOID:5409;7.27e-07;4!DOID:1793;8.85e-07;4 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,5.06e-25,22;DOID:2994,5.06e-25,22;DOID:1799,3.28e-23,1;DOID:10165,3.28e-23,1;DOID:1798,3.28e-23,1;DOID:305,4.37e-13,106;DOID:4468,2.07e-12,2;DOID:0050687,2.95e-12,143;DOID:162,2.69e-07,235;DOID:14566,3.89e-07,239;DOID:5409,7.27e-07,4;DOID:1793,8.61e-07,4 | |||
|ontology_enrichment_uberon=UBERON:0000473!1.17e-40!8;UBERON:0003135!1.70e-29!11;UBERON:0000991!2.80e-15!21;UBERON:0009196!2.80e-15!21;UBERON:0009117!2.80e-15!21;UBERON:0005564!2.80e-15!21;UBERON:0004176!1.45e-14!22;UBERON:0003101!1.45e-14!22;UBERON:0000079!1.45e-14!22;UBERON:0002323!8.10e-12!46;UBERON:0004458!4.94e-11!49;UBERON:0003886!2.36e-08!63;UBERON:0002553!2.04e-07!70 | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;9.14e-44;8!UBERON:0003135;5.20e-32;11!UBERON:0000991;4.96e-17;21!UBERON:0003101;2.80e-16;22!UBERON:0000079;2.80e-16;22!UBERON:0002323;5.21e-16;45!UBERON:0002553;4.78e-10;52!UBERON:0004458;5.65e-10;48!UBERON:0002110;8.31e-09;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,9.66e-44,8;UBERON:0003135,5.41e-32,11;UBERON:0002323,3.60e-17,46;UBERON:0000991,5.06e-17,21;UBERON:0009196,5.06e-17,21;UBERON:0009117,5.06e-17,21;UBERON:0005564,5.06e-17,21;UBERON:0004176,2.86e-16,22;UBERON:0003101,2.86e-16,22;UBERON:0000079,2.86e-16,22;UBERON:0004458,4.00e-16,49;UBERON:0003886,1.23e-14,54;UBERON:0002553,5.81e-13,61;UBERON:0002110,8.31e-09,3;UBERON:0006242,8.31e-09,3;UBERON:0003133,1.14e-07,48 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215714200818617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.324621940274555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.344743373241465,0,0,0,0,0,0,0,0,0,0,0,0,0.922255617552241,6.91133861955245,0.325942115766024,0,0,0,0,0,0,0.451191321234361,0,0,0,0,0,4.89698424477443,0,0,0,0,0,0,0,0,0,0,0.234264445725339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.62650392665732,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192619830407303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.61906694481422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.05726377028974,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.56960904096936,1.06886962106224,2.11358268930143,1.50424523575425,0.151557396436479,0.535928260312357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215714200818617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.324621940274555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.344743373241465,0,0,0,0,0,0,0,0,0,0,0,0,0.922255617552241,6.91133861955245,0.325942115766024,0,0,0,0,0,0,0.451191321234361,0,0,0,0,0,4.89698424477443,0,0,0,0,0,0,0,0,0,0,0.234264445725339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.62650392665732,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192619830407303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.61906694481422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.05726377028974,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.56960904096936,1.06886962106224,2.11358268930143,1.50424523575425,0.151557396436479,0.535928260312357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr19:17994670..17994681,+ | |short_description=p@chr19:17994670..17994681,+ | ||
}} | }} |
Latest revision as of 04:58, 26 July 2015
Short description: | p@chr19:17994670..17994681, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:17994670..17994681, + |
Coexpression cluster: | C2482_choriocarcinoma_testicular_gall_small_clear_pancreatic_H9 |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 1.15e-77 | 7 |
germ cell | 1.15e-77 | 7 |
epithelial cell of gall bladder | 1.48e-12 | 2 |
epithelial cell of pancreas | 8.61e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
testis | 9.66e-44 | 8 |
male reproductive organ | 5.41e-32 | 11 |
body cavity | 3.60e-17 | 46 |
gonad | 5.06e-17 | 21 |
indifferent external genitalia | 5.06e-17 | 21 |
indifferent gonad | 5.06e-17 | 21 |
gonad primordium | 5.06e-17 | 21 |
external genitalia | 2.86e-16 | 22 |
male organism | 2.86e-16 | 22 |
male reproductive system | 2.86e-16 | 22 |
body cavity or lining | 4.00e-16 | 49 |
body cavity precursor | 1.23e-14 | 54 |
anatomical cavity | 5.81e-13 | 61 |
gallbladder | 8.31e-09 | 3 |
gall bladder primordium | 8.31e-09 | 3 |
reproductive organ | 1.14e-07 | 48 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 5.06e-25 | 22 |
germ cell cancer | 5.06e-25 | 22 |
islet cell tumor | 3.28e-23 | 1 |
endocrine pancreas cancer | 3.28e-23 | 1 |
pancreatic endocrine carcinoma | 3.28e-23 | 1 |
carcinoma | 4.37e-13 | 106 |
clear cell adenocarcinoma | 2.07e-12 | 2 |
cell type cancer | 2.95e-12 | 143 |
cancer | 2.69e-07 | 235 |
disease of cellular proliferation | 3.89e-07 | 239 |
lung small cell carcinoma | 7.27e-07 | 4 |
pancreatic cancer | 8.61e-07 | 4 |