FFCP PHASE1:Hg19::chr19:15974207..15974218,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr19:15974207..15974218,- | |||
|description=CAGE_peak_at_chr19:15974207..15974218,- | |description=CAGE_peak_at_chr19:15974207..15974218,- | ||
|id=chr19:15974207..15974218,- | |id=chr19:15974207..15974218,- | ||
|ontology_enrichment_celltype=CL:0002166!1.87e-15!3;CL:0002159!8.10e-13!13;CL:0000066!9.73e-12!254;CL:0002149!4.13e-08!6;CL:0002255!4.13e-08!6;CL:0000240!1.98e-07!6;CL:0000311!1.98e-07!6;CL:0000079!1.98e-07!6;CL:0000237!1.98e-07!6;CL:0000036!1.98e-07!6;CL:0000357!1.98e-07!6;CL:0000114!1.98e-07!6;CL:0000076!3.01e-07!62;CL:0002231!3.76e-07!3;CL:0002541!4.54e-07!3 | |ontology_enrichment_celltype=CL:0002166!1.87e-15!3;CL:0002159!8.10e-13!13;CL:0000066!9.73e-12!254;CL:0002149!4.13e-08!6;CL:0002255!4.13e-08!6;CL:0000240!1.98e-07!6;CL:0000311!1.98e-07!6;CL:0000079!1.98e-07!6;CL:0000237!1.98e-07!6;CL:0000036!1.98e-07!6;CL:0000357!1.98e-07!6;CL:0000114!1.98e-07!6;CL:0000076!3.01e-07!62;CL:0002231!3.76e-07!3;CL:0002541!4.54e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:1000415;1.07e-17;2!CL:0002149;8.02e-07;6!CL:0002255;8.02e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:1000415,1.27e-17,2;CL:0002149,8.02e-07,6;CL:0002255,8.02e-07,6 | |||
|ontology_enrichment_development_v019=UBERON:0008814;1.07e-17;2!UBERON:0010056;1.07e-17;2 | |||
|ontology_enrichment_disease=DOID:1749!8.47e-09!14;DOID:3001!4.13e-08!6 | |||
|ontology_enrichment_disease_v019=DOID:4929;5.48e-18;2!DOID:4556;2.89e-12;3!DOID:1749;2.19e-10;14!DOID:3908;7.01e-08;5!DOID:3001;8.02e-07;6 | |||
|ontology_enrichment_disease_v019_2=DOID:4929,5.48e-18,2;DOID:4556,2.89e-12,3;DOID:305,1.24e-11,106;DOID:1749,2.08e-10,14;DOID:0050687,1.02e-08,143;DOID:3908,7.01e-08,5;DOID:3001,8.02e-07,6 | |||
|ontology_enrichment_uberon=UBERON:0001708!1.03e-11!4;UBERON:0001704!1.03e-11!4;UBERON:0002090!5.90e-08!6;UBERON:0000476!4.54e-07!3;UBERON:0000920!4.54e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0004913;1.84e-34;1!UBERON:0003703;1.84e-34;1!UBERON:0001174;1.84e-34;1!UBERON:0004914;1.84e-34;1!UBERON:0002294;7.13e-20;7!UBERON:0001173;7.13e-20;7!UBERON:0002114;1.85e-12;2!UBERON:0002110;2.89e-12;3!UBERON:0001723;2.89e-12;3!UBERON:0001033;2.89e-12;3!UBERON:0002394;1.12e-09;4!UBERON:0003928;1.12e-09;4!UBERON:0003343;1.57e-09;4!UBERON:0004785;1.57e-09;4!UBERON:0002108;5.35e-08;4!UBERON:0000974;8.97e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004913,1.84e-34,1;UBERON:0003703,1.84e-34,1;UBERON:0001174,1.84e-34,1;UBERON:0004914,1.84e-34,1;UBERON:0002294,1.13e-15,9;UBERON:0001173,1.13e-15,9;UBERON:0004912,1.13e-15,9;UBERON:0002114,1.85e-12,2;UBERON:0001723,2.59e-12,3;UBERON:0001033,2.59e-12,3;UBERON:0010056,2.59e-12,3;UBERON:0002110,3.24e-12,3;UBERON:0006242,3.24e-12,3;UBERON:0003343,1.44e-09,4;UBERON:0004785,1.44e-09,4;UBERON:0002108,5.35e-08,4;UBERON:0002394,7.17e-07,6;UBERON:0003928,7.17e-07,6 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329250856225877,0,0.100528972411631,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0,0.93733833986777,0.671928512795438,0.283550194484773,0,0,0.383382679165211,0,0.528290604079356,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.40101294060657,0.0920809889358963,0,0,0,0,0.924184045252977,0,0,0,0,0,0,0,0,0,0,0,0.447749509444357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.165284915360978,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.886860307073351,0.459446800413919,0,0,0,0,0,0,0,0,0.213648142254946,0,0.735120647943095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0,0,0.46112780877612,0,0,0.31900115973192,0.0915975934018623,0,0,0.156980256395025,0,0,0,0,0,0.158936578980379,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284609546029793,0,0,0.685946781900644,0,0,0,0,0,0,0,0,0,0,0,0,0,1.04206466326994,0,0,0,0,0,0,0,0.942776138467182,0,0.104602846312333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15149118391667,0,0,0,0,0,0,0,0.82092520749339,0,0.113312091520126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235265819698172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231522474323834,0,0,0,0,0,0,0.168942440653073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15525666150338,0,0,0,0,0,0,0,0,7.24494822463522,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.39818978046554,0,0,0,0,0,0,0,0,0,0,0,0,0,2.7492824225286,0,0.955538938977433,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.352894871715692,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329250856225877,0,0.100528972411631,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0,0.93733833986777,0.671928512795438,0.283550194484773,0,0,0.383382679165211,0,0.528290604079356,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.40101294060657,0.0920809889358963,0,0,0,0,0.924184045252977,0,0,0,0,0,0,0,0,0,0,0,0.447749509444357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.165284915360978,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.886860307073351,0.459446800413919,0,0,0,0,0,0,0,0,0.213648142254946,0,0.735120647943095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0,0,0.46112780877612,0,0,0.31900115973192,0.0915975934018623,0,0,0.156980256395025,0,0,0,0,0,0.158936578980379,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284609546029793,0,0,0.685946781900644,0,0,0,0,0,0,0,0,0,0,0,0,0,1.04206466326994,0,0,0,0,0,0,0,0.942776138467182,0,0.104602846312333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15149118391667,0,0,0,0,0,0,0,0.82092520749339,0,0.113312091520126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235265819698172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231522474323834,0,0,0,0,0,0,0.168942440653073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15525666150338,0,0,0,0,0,0,0,0,7.24494822463522,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.39818978046554,0,0,0,0,0,0,0,0,0,0,0,0,0,2.7492824225286,0,0.955538938977433,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.352894871715692,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr19:15974207..15974218,- | |short_description=p@chr19:15974207..15974218,- | ||
}} | }} |
Latest revision as of 04:38, 26 July 2015
Short description: | p@chr19:15974207..15974218, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:15974207..15974218, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of gall bladder | 1.27e-17 | 2 |
epithelial cell of uterus | 8.02e-07 | 6 |
stromal cell of endometrium | 8.02e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
hepatopancreatic ampulla | 1.84e-34 | 1 |
extrahepatic bile duct | 1.84e-34 | 1 |
common bile duct | 1.84e-34 | 1 |
duodenal papilla | 1.84e-34 | 1 |
biliary system | 1.13e-15 | 9 |
biliary tree | 1.13e-15 | 9 |
biliary bud | 1.13e-15 | 9 |
duodenum | 1.85e-12 | 2 |
tongue | 2.59e-12 | 3 |
gustatory system | 2.59e-12 | 3 |
future tongue | 2.59e-12 | 3 |
gallbladder | 3.24e-12 | 3 |
gall bladder primordium | 3.24e-12 | 3 |
mucosa of oral region | 1.44e-09 | 4 |
respiratory system mucosa | 1.44e-09 | 4 |
small intestine | 5.35e-08 | 4 |
bile duct | 7.17e-07 | 6 |
digestive system duct | 7.17e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
tubular adenocarcinoma | 5.48e-18 | 2 |
lung large cell carcinoma | 2.89e-12 | 3 |
carcinoma | 1.24e-11 | 106 |
squamous cell carcinoma | 2.08e-10 | 14 |
cell type cancer | 1.02e-08 | 143 |
non-small cell lung carcinoma | 7.01e-08 | 5 |
female reproductive endometrioid cancer | 8.02e-07 | 6 |