FFCP PHASE1:Hg19::chr13:30951124..30951135,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=42761 | |HGNC=42761 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-23bp_to_ENST00000416261_5end | |association_with_transcript=-23bp_to_ENST00000416261_5end | ||
|cluster_id=chr13:30951124..30951135,- | |||
|coexpression_cluster_id=C900 | |||
|description=CAGE_peak_4_at_LINC00426_5end | |description=CAGE_peak_4_at_LINC00426_5end | ||
|id=chr13:30951124..30951135,- | |id=chr13:30951124..30951135,- | ||
|ontology_enrichment_celltype=CL:0000542!5.18e-48!53;CL:0000051!5.18e-48!53;CL:0000838!1.92e-46!52;CL:0000037!2.73e-27!172;CL:0000566!2.73e-27!172;CL:0000084!1.90e-26!25;CL:0000827!1.90e-26!25;CL:0000988!6.86e-25!182;CL:0000738!2.07e-24!140;CL:0002032!4.11e-24!165;CL:0000837!4.11e-24!165;CL:0000791!8.68e-24!18;CL:0000789!8.68e-24!18;CL:0002420!8.68e-24!18;CL:0002419!8.68e-24!18;CL:0000790!8.68e-24!18;CL:0002087!6.50e-23!119;CL:0002031!3.57e-20!124;CL:0000945!1.88e-16!24;CL:0000826!1.88e-16!24;CL:0000625!1.48e-14!11;CL:0000624!4.10e-09!6;CL:0000898!9.78e-08!3;CL:0000623!8.58e-07!3;CL:0000825!8.58e-07!3 | |ontology_enrichment_celltype=CL:0000542!5.18e-48!53;CL:0000051!5.18e-48!53;CL:0000838!1.92e-46!52;CL:0000037!2.73e-27!172;CL:0000566!2.73e-27!172;CL:0000084!1.90e-26!25;CL:0000827!1.90e-26!25;CL:0000988!6.86e-25!182;CL:0000738!2.07e-24!140;CL:0002032!4.11e-24!165;CL:0000837!4.11e-24!165;CL:0000791!8.68e-24!18;CL:0000789!8.68e-24!18;CL:0002420!8.68e-24!18;CL:0002419!8.68e-24!18;CL:0000790!8.68e-24!18;CL:0002087!6.50e-23!119;CL:0002031!3.57e-20!124;CL:0000945!1.88e-16!24;CL:0000826!1.88e-16!24;CL:0000625!1.48e-14!11;CL:0000624!4.10e-09!6;CL:0000898!9.78e-08!3;CL:0000623!8.58e-07!3;CL:0000825!8.58e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000084;8.24e-15;25!CL:0000791;6.16e-12;18!CL:0000789;6.16e-12;18!CL:0002419;6.16e-12;18!CL:0000898;1.77e-09;3!CL:0000625;4.00e-09;11!CL:0000895;1.79e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000084,8.03e-15,25;CL:0000827,8.03e-15,25;CL:0000791,5.01e-12,18;CL:0000789,5.01e-12,18;CL:0002420,5.01e-12,18;CL:0002419,5.01e-12,18;CL:0000790,5.01e-12,18;CL:0000838,2.99e-10,52;CL:0000542,5.03e-10,53;CL:0000051,5.03e-10,53;CL:0000898,1.34e-09,3;CL:0000625,3.67e-09,11;CL:0000810,1.30e-07,1;CL:0000895,1.30e-07,1;CL:0002436,1.30e-07,1;CL:0002427,1.30e-07,1;CL:0002428,1.30e-07,1;CL:0002429,1.30e-07,1;CL:0002433,1.30e-07,1;CL:0002431,1.30e-07,1;CL:0002432,1.30e-07,1 | |||
|ontology_enrichment_development_v019=CL:0000790;6.16e-12;18!CL:0002427;1.79e-07;1 | |||
|ontology_enrichment_disease=DOID:2531!4.24e-13!51;DOID:0060083!4.24e-13!51;DOID:0060058!1.71e-08!10;DOID:1240!3.11e-08!39 | |ontology_enrichment_disease=DOID:2531!4.24e-13!51;DOID:0060083!4.24e-13!51;DOID:0060058!1.71e-08!10;DOID:1240!3.11e-08!39 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004177!4.75e-11!7;UBERON:0002370!7.56e-10!4;UBERON:0005058!7.56e-10!4;UBERON:0009113!7.56e-10!4;UBERON:0003295!7.56e-10!4;UBERON:0005562!7.56e-10!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;1.82e-14;2!UBERON:0005058;1.82e-14;2!UBERON:0009113;1.82e-14;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,2.14e-15,4;UBERON:0005058,2.14e-15,4;UBERON:0009113,2.14e-15,4;UBERON:0003295,2.14e-15,4;UBERON:0005562,2.14e-15,4;UBERON:0003351,1.98e-10,6;UBERON:0004177,5.27e-09,7;UBERON:0005057,5.27e-09,7 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382067028739756,0.246301768349837,0.236132343941038,0,0.383829398097213,0.154816123316076,0,0,0,0.387336002901508,0.142169232487422,0,0,0,0.217010870715852,0,0,0.257575567634187,0,0,0,0,0,0,0,0,0,0,0.645484683583826,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.889509253863555,0.426730222566507,0,0,1.32208974556972,0,0.569212969109448,0.587237189370939,0,1.32171328579026,0.560508562981536,0.790152254325231,0.983548850569165,0,0.205601498999509,2.84217042164153,0.977766799900771,0.946895611469467,0,3.34231370655521,3.82987679717288,2.43687284041983,2.70803863765016,1.66518715643378,2.73124629875744,1.31550323682941,3.31620021343018,1.44901542867526,0.593146252648242,1.07016331235885,1.04535523804977,1.24640276967323,1.53288197440768,1.37450978193052,2.02415753615602,0.95569624297229,0,1.90090408889675,1.6563263098555,1.02389288923535,1.24930726552346,0.710331756132051,0,0.80642697289893,0.802320587350522,0.144824403882799,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.476981248610684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.5317047953172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492663237895943,0.088048434013226,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.672510863961164,1.77327684181734,0.215627574859517,0.385029108839245,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0.647142602455851,0.426910231213777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.507447609232169,0,0.569647187174163,1.42939065274673,0.822724546172388,0,0,0,0,0,0,0.371606350251437,0,1.06712765022621,0.478278818186467,0,0.191505370132367,0.211673582723883,0,1.12318871245384,1.14117339516596,0.626719583092093,2.50634477090067,0,0,0.201799707191048,0,0.687010689511529,0,0,0,0.586164286206121,0,0,0,0,0,0,0,0,0.222886768554957,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0.123084805461069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254253650292766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.04386596391473,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0,0,0,0,0,0,0,0.182454789215666,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169346664131569,0,0,0,0,0,0.2249738915515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.992332043623902,0.197611631897944,0.243585196761792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.172214979660816,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157723490002507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.230467975111559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0.245148321753905,0,0,0,0,0,0.469919589899268,0.322289439867886,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.45663477868442,4.59352885789349,0,0,0,0,0,0.606168477131288,0.0717222053926763,0,0,0,0,0,0,0,0,0,0.201273793591026,0 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| ||
|short_description=p4@LINC00426 | |short_description=p4@LINC00426 | ||
}} | }} |
Latest revision as of 01:57, 17 September 2015
Short description: | p4@LINC00426 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_LINC00426_5end |
Coexpression cluster: | C900_CD4_thymus_Hodgkin_CD8_CD34_chronic_CD133 |
Association with transcript: | -23bp_to_ENST00000416261_5end |
EntrezGene: | NA |
HGNC: | 42761 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
T cell | 8.03e-15 | 25 |
pro-T cell | 8.03e-15 | 25 |
mature alpha-beta T cell | 5.01e-12 | 18 |
alpha-beta T cell | 5.01e-12 | 18 |
immature T cell | 5.01e-12 | 18 |
mature T cell | 5.01e-12 | 18 |
immature alpha-beta T cell | 5.01e-12 | 18 |
lymphoid lineage restricted progenitor cell | 2.99e-10 | 52 |
lymphocyte | 5.03e-10 | 53 |
common lymphoid progenitor | 5.03e-10 | 53 |
naive T cell | 1.34e-09 | 3 |
CD8-positive, alpha-beta T cell | 3.67e-09 | 11 |
CD4-positive, alpha-beta thymocyte | 1.30e-07 | 1 |
naive thymus-derived CD4-positive, alpha-beta T cell | 1.30e-07 | 1 |
mature CD4 single-positive thymocyte | 1.30e-07 | 1 |
resting double-positive thymocyte | 1.30e-07 | 1 |
double-positive blast | 1.30e-07 | 1 |
CD69-positive double-positive thymocyte | 1.30e-07 | 1 |
CD69-positive, CD4-positive single-positive thymocyte | 1.30e-07 | 1 |
CD4-positive, CD8-intermediate double-positive thymocyte | 1.30e-07 | 1 |
CD24-positive, CD4 single-positive thymocyte | 1.30e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
thymus | 2.14e-15 | 4 |
hemolymphoid system gland | 2.14e-15 | 4 |
thymic region | 2.14e-15 | 4 |
pharyngeal gland | 2.14e-15 | 4 |
thymus primordium | 2.14e-15 | 4 |
pharyngeal epithelium | 1.98e-10 | 6 |
hemopoietic organ | 5.27e-09 | 7 |
immune organ | 5.27e-09 | 7 |