FFCP PHASE1:Hg19::chr13:110959448..110959476,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1284 | |EntrezGene=1284 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2203 | |HGNC=2203 | ||
|TSSclassifier=strong | |||
|UniProt=P08572 | |UniProt=P08572 | ||
|association_with_transcript=-137bp_to_ENST00000360467,ENST00000480771_5end | |association_with_transcript=-137bp_to_ENST00000360467,ENST00000480771_5end | ||
|cluster_id=chr13:110959448..110959476,+ | |||
|description=CAGE_peak_5_at_COL4A2_5end | |description=CAGE_peak_5_at_COL4A2_5end | ||
|id=chr13:110959448..110959476,+ | |id=chr13:110959448..110959476,+ | ||
|ontology_enrichment_celltype=CL:0000055!2.40e-15!180;CL:0000057!1.48e-10!75;CL:0000222!2.75e-07!119 | |ontology_enrichment_celltype=CL:0000055!2.40e-15!180;CL:0000057!1.48e-10!75;CL:0000222!2.75e-07!119 | ||
|ontology_enrichment_celltype_v019=CL:1000746;9.50e-09;7!CL:1000612;9.50e-09;7!CL:0000746;3.42e-08;3!CL:0002334;3.69e-08;12!CL:0002579;2.81e-07;3!CL:1000449;4.16e-07;15!CL:0002681;5.99e-07;12!CL:0002584;5.99e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,9.26e-09,76;CL:1000746,1.95e-08,7;CL:1000612,1.95e-08,7;CL:0000746,3.63e-08,3;CL:0000513,3.63e-08,3;CL:0002334,8.01e-08,12;CL:1000449,6.11e-07,15;CL:0002681,9.76e-07,12;CL:0002584,9.76e-07,12 | |||
|ontology_enrichment_development_v019=CL:0000513;3.42e-08;3 | |||
|ontology_enrichment_disease=DOID:2394!1.65e-07!14 | |ontology_enrichment_disease=DOID:2394!1.65e-07!14 | ||
|ontology_enrichment_disease_v019=DOID:2394;6.92e-09;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,1.22e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0000477!7.65e-08!286;UBERON:0003886!3.02e-07!63;UBERON:0000468!3.26e-07!659;UBERON:0002553!7.23e-07!70;UBERON:0001009!7.40e-07!113 | |ontology_enrichment_uberon=UBERON:0000477!7.65e-08!286;UBERON:0003886!3.02e-07!63;UBERON:0000468!3.26e-07!659;UBERON:0002553!7.23e-07!70;UBERON:0001009!7.40e-07!113 | ||
|ontology_enrichment_uberon_v019=UBERON:0000353;4.06e-09;15!UBERON:0007100;9.35e-09;25!UBERON:0000074;9.50e-09;7!UBERON:0001229;9.50e-09;7!UBERON:0006555;4.16e-07;15!UBERON:0004819;4.16e-07;15!UBERON:0001285;4.16e-07;15!UBERON:0007684;4.16e-07;15!UBERON:0001225;5.99e-07;12!UBERON:0008987;5.99e-07;12!UBERON:0000948;7.51e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003103,1.20e-09,68;UBERON:0003887,3.91e-09,12;UBERON:0000353,6.03e-09,15;UBERON:0010532,1.95e-08,7;UBERON:0000074,1.95e-08,7;UBERON:0001229,1.95e-08,7;UBERON:0001230,1.95e-08,7;UBERON:0003220,1.95e-08,7;UBERON:0005749,1.95e-08,7;UBERON:0004199,1.95e-08,7;UBERON:0004209,1.95e-08,7;UBERON:0004198,1.95e-08,7;UBERON:0002417,2.75e-08,60;UBERON:0000916,2.75e-08,60;UBERON:0007100,4.72e-08,27;UBERON:0005103,2.53e-07,8;UBERON:0000083,2.53e-07,8;UBERON:0009201,2.53e-07,8;UBERON:0006553,2.53e-07,8;UBERON:0003074,2.53e-07,8;UBERON:0003060,2.53e-07,8;UBERON:0003886,6.02e-07,54;UBERON:0004211,6.11e-07,15;UBERON:0009773,6.11e-07,15;UBERON:0001231,6.11e-07,15;UBERON:0001285,6.11e-07,15;UBERON:0007684,6.11e-07,15;UBERON:0004208,6.11e-07,15;UBERON:0001225,9.76e-07,12;UBERON:0008987,9.76e-07,12 | |||
|phase1_expression=0.908391896352783,0.428201047781966,0.845726424575827,2.00146596706261,0.893922188854576,0,0,0.631719873426831,0.261185628199839,0.245733936501509,0,0,1.58260186937072,0.74259811776028,0.331397375727916,0,0,0,1.46379839637152,0.61560529038394,0.408001382488506,0.313454721478088,0.286235987131057,0.136874425072884,0.502170558379211,0,0.0821005894499457,0,0,0,0,0.919421224478927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196709770113833,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.87613732627923,1.34140171940727,2.55725123687061,1.0843174571537,1.50401373190767,1.15877215168659,0,0.973269740605272,0.378139268656271,1.55210578223795,0.966182642624386,0.982343066232845,0,0,0,0,0,0,0,0,0.596287222100115,0.860234595106124,0.347140501607594,1.69592382577203,2.93649605346934,0.825354125820202,0.417989933073621,0.516833518338658,0.35576626268671,0.66944122552934,0.402829317109147,0,0.488124115096339,0,0,0.357198913136319,0.898117490504679,0.675668882899933,0,0,0.549605231791222,0,0,0.436094052142534,1.98788780678127,0.379891534993739,0.397227542439656,2.58152958673932,0.354668382198357,0.560677600142307,0,0.49333509683432,1.24484414159907,1.0776853765575,0.653847612453835,1.05950199351452,1.72852777344,0.468642863667593,0.624320153660641,0,0.597794722207204,0.23486899728753,0.161872944368132,0,0,0,0,1.18800285728205,0.989067717114227,4.55080680969013,0.718618141816238,0.168336113954066,0.125118519871964,0,0.438977620880838,0.612975591598039,0.901428353439581,0.453728732640084,1.97328599257748,0.640672166455702,0.211931901159562,2.70081986475962,0.515262646192195,2.06112432036503,0.37223371266318,2.02531598689519,0.779496041289589,1.51460264546469,0.828449087780694,0.323292113637624,1.06502877754984,0.503760491138201,0.508681776931463,0.386521706326594,0,0,0,0.132529768321485,0.116193942869518,0.414644220061482,0.504641701751257,0,0,0,0,0,0,0.118306800039844,0.168584690078102,0.241011029883482,0.220587945464788,0.217879444092406,0,0,0,0,1.4763109092493,1.40241773803446,6.173610169971,4.41026134156626,0,0,0,0,0,0.343135620597051,0.219500570817251,0,0,0.185176890317059,0,0,0,0.463721619900307,0.939269553886573,0.866198686566443,0.462985512576611,0.951270761172991,0,0,0,0,0,0,0,0.283550194484773,0,0,0.383382679165211,0,0,0,0,0,0.952468414382536,0.763976851116555,0,0,0.822619941626588,1.50171528921959,0.857479297891735,0.336393253036082,0,0.2933531432838,1.29271715757778,0,0,0.26593811658487,0,0.257207374262142,2.83698264046557,0.266422179016099,0.857867961948885,2.71310802695722,1.64648067356154,0.977208552881205,0.355391948742546,0.791951872933429,1.20575750823834,0,1.89948683245908,0,0,0,1.19812427745791,0,0,0,0.821905290201534,0.179060963239896,0,0,0,0,1.01637849688985,0,0,0.167516265334349,0.637938751653163,0,0,0,0.36807447515742,0.500170521059677,0,1.24782516918484,0.356857977594324,0.788512075169673,0.468565659970853,0.601892199455438,0,0,1.32845119707087,1.29058417979192,0.260650843404249,0.979005787313703,0.686286847621712,0,0,0,0,0,0,1.24053903909388,0.920771839728375,1.12264037773229,1.02511319404561,1.02341449813341,1.44768529029247,1.48418066444991,0.154209693802656,0.177561725313127,0.0821271560138091,1.55776328755086,0,0,0.200506470303285,0,0.459257792658427,0.364182336013434,0.786746489756545,3.15839729035188,0.462092022626489,0,1.46139224653261,0.211103257785751,2.27466768141793,1.19065593693561,0.647747748306418,4.62681758070868,1.08378575017541,4.51520796469368,0.254876273045038,0.831076008928724,0,0,0,0,0.328014645699706,0.976135183992909,0.103041011647722,0,0,0,0.650060246036521,0,0.096670718292122,0.616194468458578,0.614014698904518,0.137836572484531,0.429680979473094,0.870100163485371,0.255679882248303,0.979352392114111,0,0.960950336825531,0.765676274967505,0.4046311234222,0,1.5740617341532,0.6970372701606,0,0.532306030317022,0.869932992075073,0.18532421910392,0.286249773483982,0.372158369359667,0,0.571890581771475,0.767693373934002,0,0.636406495851874,0,0.179872457583315,0.54907405947211,0.117812402345686,0,0,0,1.95053495635836,0,0,0.682499557039929,0.565621727814851,0,0,0,0.876901770507525,0,0.655894752046633,0.202910376962704,0,0,0,0.589494246078727,0,0.709522128141196,0.633322905892992,0.658589785919804,0.379473173765715,0.699869440489966,0,0,0,0.0941438007767792,0.86101074534246,1.68471475667626,0.886860307073351,0.689170200620878,0,0,0,0,0,0,0,0,0,0,0.490080431962063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425846237690326,0,0,0,0,0,0,0,0,0,0,0,0.439524537815682,0,0,0,0.23874448473769,0,0,0,0,0.111308705022906,0,0,0.597743964753209,0.276283915531148,0,0.511343412510774,0,0.311039587661807,0,0,0,0.394573622547734,0,0,0,0.0927680981618513,0,0,0,0,0,0,0.472775363535873,0,0,0,0,0,0,0.110579259931225,0,0,0,0.139423744278603,1.38510465306835,0.797594390929008,1.38338342632836,0.359030577639089,0.54323685961004,0,0.549585560411174,2.66517388009317,0,0,0,0,0,0,0,0,0.421996129056054,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| ||
|short_description=p5@COL4A2 | |short_description=p5@COL4A2 | ||
}} | }} |
Latest revision as of 12:39, 16 September 2015
Short description: | p5@COL4A2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_COL4A2_5end |
Coexpression cluster: | NA |
Association with transcript: | -137bp_to_ENST00000360467, ENST00000480771_5end |
EntrezGene: | COL4A2 |
HGNC: | 2203 |
UniProt: | P08572 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 9.26e-09 | 76 |
glomerular cell | 1.95e-08 | 7 |
kidney corpuscule cell | 1.95e-08 | 7 |
cardiac muscle cell | 3.63e-08 | 3 |
cardiac muscle myoblast | 3.63e-08 | 3 |
preadipocyte | 8.01e-08 | 12 |
epithelial cell of nephron | 6.11e-07 | 15 |
kidney cortical cell | 9.76e-07 | 12 |
renal cortical epithelial cell | 9.76e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
compound organ | 1.20e-09 | 68 |
intraembryonic coelom | 3.91e-09 | 12 |
parenchyma | 6.03e-09 | 15 |
primitive nephron | 1.95e-08 | 7 |
renal glomerulus | 1.95e-08 | 7 |
renal corpuscle | 1.95e-08 | 7 |
glomerular capsule | 1.95e-08 | 7 |
metanephric mesenchyme | 1.95e-08 | 7 |
glomerular tuft | 1.95e-08 | 7 |
S-shaped body | 1.95e-08 | 7 |
renal vesicle | 1.95e-08 | 7 |
comma-shaped body | 1.95e-08 | 7 |
abdominal segment of trunk | 2.75e-08 | 60 |
abdomen | 2.75e-08 | 60 |
primary circulatory organ | 4.72e-08 | 27 |
mesonephric epithelium | 2.53e-07 | 8 |
mesonephric tubule | 2.53e-07 | 8 |
nephric duct | 2.53e-07 | 8 |
renal duct | 2.53e-07 | 8 |
mesonephric duct | 2.53e-07 | 8 |
pronephric duct | 2.53e-07 | 8 |
body cavity precursor | 6.02e-07 | 54 |
nephron epithelium | 6.11e-07 | 15 |
renal tubule | 6.11e-07 | 15 |
nephron tubule | 6.11e-07 | 15 |
nephron | 6.11e-07 | 15 |
uriniferous tubule | 6.11e-07 | 15 |
nephrogenic mesenchyme | 6.11e-07 | 15 |
cortex of kidney | 9.76e-07 | 12 |
renal parenchyma | 9.76e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 1.22e-08 | 14 |