FFCP PHASE1:Hg19::chr17:4843943..4843963,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=26001 | |EntrezGene=26001 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24544 | |HGNC=24544 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=161bp_to_uc002fzu.2,uc002fzv.2_5end | |association_with_transcript=161bp_to_uc002fzu.2,uc002fzv.2_5end | ||
|cluster_id=chr17:4843943..4843963,+ | |||
|description=CAGE_peak_3_at_RNF167_5end | |description=CAGE_peak_3_at_RNF167_5end | ||
|id=chr17:4843943..4843963,+ | |id=chr17:4843943..4843963,+ | ||
|ontology_enrichment_celltype=CL:0000066!2.91e-53!254;CL:0002321!7.33e-29!248;CL:0000220!2.91e-28!246;CL:0000223!4.79e-15!59;CL:0000076!4.91e-15!62;CL:0002076!1.05e-13!43;CL:0000222!5.72e-10!119;CL:0002251!1.80e-07!21;CL:0000548!1.87e-07!679;CL:0000004!1.87e-07!679;CL:0000255!1.87e-07!679;CL:0000012!4.37e-07!682;CL:0002077!5.99e-07!33;CL:0000213!6.54e-07!57;CL:0000215!6.54e-07!57 | |ontology_enrichment_celltype=CL:0000066!2.91e-53!254;CL:0002321!7.33e-29!248;CL:0000220!2.91e-28!246;CL:0000223!4.79e-15!59;CL:0000076!4.91e-15!62;CL:0002076!1.05e-13!43;CL:0000222!5.72e-10!119;CL:0002251!1.80e-07!21;CL:0000548!1.87e-07!679;CL:0000004!1.87e-07!679;CL:0000255!1.87e-07!679;CL:0000012!4.37e-07!682;CL:0002077!5.99e-07!33;CL:0000213!6.54e-07!57;CL:0000215!6.54e-07!57 | ||
|ontology_enrichment_celltype_v019=CL:0002076;4.58e-10;42!CL:0002251;1.69e-07;20!CL:0000076;1.90e-07;63 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,6.39e-54,253;CL:0002321,1.12e-28,250;CL:0000076,4.13e-15,63;CL:0000223,4.84e-15,58;CL:0002076,1.00e-13,42;CL:0000222,9.09e-10,121;CL:0002251,1.72e-07,20;CL:0000213,4.71e-07,58;CL:0000215,4.71e-07,58;CL:0002077,5.15e-07,34 | |||
|ontology_enrichment_development_v019=CL:0000223;8.97e-09;58 | |||
|ontology_enrichment_disease=DOID:305!3.37e-17!106;DOID:0050687!5.31e-17!143;DOID:14566!2.30e-13!239;DOID:162!1.83e-12!235 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,3.78e-17,106;DOID:0050687,6.45e-17,143;DOID:14566,2.37e-13,239;DOID:162,1.90e-12,235 | |||
|ontology_enrichment_uberon=UBERON:0004119!1.85e-14!169;UBERON:0000925!1.85e-14!169;UBERON:0006595!1.85e-14!169;UBERON:0003104!3.12e-14!238;UBERON:0009142!3.12e-14!238;UBERON:0000466!2.63e-11!126;UBERON:0009569!8.00e-11!113;UBERON:0004921!1.45e-10!129;UBERON:0004185!1.45e-10!129;UBERON:0001007!2.47e-10!155;UBERON:0001555!2.47e-10!155;UBERON:0007026!2.47e-10!155;UBERON:0002100!2.85e-10!216;UBERON:0000464!2.96e-10!104;UBERON:0003914!3.14e-10!118;UBERON:0000077!6.91e-10!130;UBERON:0001004!1.68e-09!72;UBERON:0001041!8.44e-09!98;UBERON:0006554!1.23e-08!44;UBERON:0008947!1.55e-08!38;UBERON:0003258!1.55e-08!38;UBERON:0000481!1.76e-08!347;UBERON:0000065!2.07e-08!53;UBERON:0005177!2.60e-08!107;UBERON:0001048!3.57e-08!168;UBERON:0001008!3.89e-08!45;UBERON:0000490!4.51e-08!138;UBERON:0005156!1.20e-07!59;UBERON:0000990!1.20e-07!59;UBERON:0000072!1.82e-07!46;UBERON:0003100!2.39e-07!41;UBERON:0005256!6.02e-07!143;UBERON:0003133!6.27e-07!48;UBERON:0001737!6.28e-07!9;UBERON:0005911!7.85e-07!82 | |||
|ontology_enrichment_uberon_v019=UBERON:0006554;3.36e-09;30!UBERON:0001008;3.36e-09;30!UBERON:0000065;1.22e-07;44!UBERON:0000072;1.24e-07;37!UBERON:0001737;5.69e-07;9!UBERON:0001557;5.69e-07;9!UBERON:0002113;6.25e-07;24!UBERON:0011143;6.25e-07;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,6.52e-14,160;UBERON:0000925,6.52e-14,160;UBERON:0006595,6.52e-14,160;UBERON:0002100,7.18e-12,199;UBERON:0006554,8.25e-11,47;UBERON:0003914,1.27e-10,117;UBERON:0009569,1.40e-10,112;UBERON:0004921,1.52e-10,118;UBERON:0001008,3.06e-10,48;UBERON:0001007,3.93e-10,145;UBERON:0001555,3.93e-10,145;UBERON:0007026,3.93e-10,145;UBERON:0005177,2.34e-09,101;UBERON:0001041,6.55e-09,87;UBERON:0001004,7.06e-09,74;UBERON:0008947,1.85e-08,38;UBERON:0003258,1.85e-08,38;UBERON:0001048,4.90e-08,160;UBERON:0000065,8.16e-08,54;UBERON:0003104,9.47e-08,160;UBERON:0009142,9.47e-08,160;UBERON:0005156,1.16e-07,59;UBERON:0000990,1.16e-07,59;UBERON:0003100,2.32e-07,41;UBERON:0003133,6.09e-07,48;UBERON:0001737,6.10e-07,9;UBERON:0000072,7.14e-07,47;UBERON:0005911,9.32e-07,82 | |||
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| ||
|short_description=p3@RNF167 | |short_description=p3@RNF167 | ||
}} | }} |
Latest revision as of 01:58, 16 September 2015
Short description: | p3@RNF167 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_RNF167_5end |
Coexpression cluster: | NA |
Association with transcript: | 161bp_to_uc002fzu.2, uc002fzv.2_5end |
EntrezGene: | RNF167 |
HGNC: | 24544 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 6.39e-54 | 253 |
embryonic cell | 1.12e-28 | 250 |
squamous epithelial cell | 4.13e-15 | 63 |
endodermal cell | 4.84e-15 | 58 |
endo-epithelial cell | 1.00e-13 | 42 |
mesodermal cell | 9.09e-10 | 121 |
epithelial cell of alimentary canal | 1.72e-07 | 20 |
lining cell | 4.71e-07 | 58 |
barrier cell | 4.71e-07 | 58 |
ecto-epithelial cell | 5.15e-07 | 34 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 6.52e-14 | 160 |
endoderm | 6.52e-14 | 160 |
presumptive endoderm | 6.52e-14 | 160 |
trunk | 7.18e-12 | 199 |
urinary system structure | 8.25e-11 | 47 |
epithelial tube | 1.27e-10 | 117 |
subdivision of trunk | 1.40e-10 | 112 |
subdivision of digestive tract | 1.52e-10 | 118 |
renal system | 3.06e-10 | 48 |
digestive system | 3.93e-10 | 145 |
digestive tract | 3.93e-10 | 145 |
primitive gut | 3.93e-10 | 145 |
trunk region element | 2.34e-09 | 101 |
foregut | 6.55e-09 | 87 |
respiratory system | 7.06e-09 | 74 |
respiratory primordium | 1.85e-08 | 38 |
endoderm of foregut | 1.85e-08 | 38 |
primordium | 4.90e-08 | 160 |
respiratory tract | 8.16e-08 | 54 |
mesenchyme | 9.47e-08 | 160 |
entire embryonic mesenchyme | 9.47e-08 | 160 |
reproductive structure | 1.16e-07 | 59 |
reproductive system | 1.16e-07 | 59 |
female organism | 2.32e-07 | 41 |
reproductive organ | 6.09e-07 | 48 |
larynx | 6.10e-07 | 9 |
segment of respiratory tract | 7.14e-07 | 47 |
endo-epithelium | 9.32e-07 | 82 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 3.78e-17 | 106 |
cell type cancer | 6.45e-17 | 143 |
disease of cellular proliferation | 2.37e-13 | 239 |
cancer | 1.90e-12 | 235 |