FFCP PHASE1:Hg19::chr16:19429231..19429243,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=79838 | |EntrezGene=79838 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=22999 | |HGNC=22999 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=213bp_to_ENST00000542583,uc010var.1_5end | |association_with_transcript=213bp_to_ENST00000542583,uc010var.1_5end | ||
|cluster_id=chr16:19429231..19429243,+ | |||
|coexpression_cluster_id=C2361 | |||
|description=CAGE_peak_6_at_TMC5_5end | |description=CAGE_peak_6_at_TMC5_5end | ||
|id=chr16:19429231..19429243,+ | |id=chr16:19429231..19429243,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000167;4.28e-08;1!CL:0000164;4.28e-08;1!CL:0000502;4.28e-08;1!CL:0000172;4.28e-08;1!CL:0000173;4.28e-08;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000167,4.28e-08,1;CL:0000164,4.28e-08,1;CL:0000502,4.28e-08,1;CL:0000172,4.28e-08,1;CL:0000173,4.28e-08,1;CL:0002351,4.28e-08,1 | |||
|ontology_enrichment_development_v019=CL:0002351;4.28e-08;1!UBERON:0006242;1.48e-07;1!UBERON:0006595;5.74e-07;86 | |||
|ontology_enrichment_disease=DOID:3493!1.04e-07!2 | |||
|ontology_enrichment_disease_v019=DOID:3493;2.79e-14;2!DOID:299;1.17e-08;25!DOID:4430;4.28e-08;1!DOID:3111;7.26e-08;1!DOID:3603;7.26e-08;1!DOID:0050619;2.31e-07;1!DOID:1357;2.31e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3493,2.88e-14,2;DOID:299,1.06e-08,25;DOID:4430,4.28e-08,1;DOID:3111,6.80e-08,1;DOID:3603,6.80e-08,1;DOID:0050619,2.98e-07,1;DOID:1357,2.98e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0004921!4.60e-14!129;UBERON:0004185!4.60e-14!129;UBERON:0004119!2.04e-12!169;UBERON:0000925!2.04e-12!169;UBERON:0006595!2.04e-12!169;UBERON:0005409!1.32e-11!35;UBERON:0001007!2.17e-11!155;UBERON:0001555!2.17e-11!155;UBERON:0007026!2.17e-11!155;UBERON:0000160!4.74e-11!27;UBERON:0007023!2.09e-10!115;UBERON:0000077!7.74e-08!130;UBERON:0003127!2.08e-07!2;UBERON:0002394!2.31e-07!4;UBERON:0003928!2.31e-07!4;UBERON:0000341!2.74e-07!2;UBERON:0002294!3.82e-07!7;UBERON:0001173!3.82e-07!7;UBERON:0004912!3.82e-07!7;UBERON:0000059!8.53e-07!11 | |||
|ontology_enrichment_uberon_v019=UBERON:0002108;3.98e-21;4!UBERON:0005409;6.81e-17;22!UBERON:0003127;1.23e-13;2!UBERON:0000341;2.54e-13;2!UBERON:0000160;1.55e-12;17!UBERON:0004921;2.04e-10;33!UBERON:0002114;1.34e-09;2!UBERON:0002294;1.45e-08;7!UBERON:0001173;1.45e-08;7!UBERON:0004913;8.84e-08;1!UBERON:0003703;8.84e-08;1!UBERON:0001174;8.84e-08;1!UBERON:0004914;8.84e-08;1!UBERON:0001301;1.22e-07;1!UBERON:0001764;2.31e-07;1!UBERON:0001825;2.31e-07;1!UBERON:0002394;3.71e-07;4!UBERON:0003928;3.71e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002108,3.98e-21,4;UBERON:0005409,8.22e-15,25;UBERON:0003127,1.19e-13,2;UBERON:0000341,2.11e-13,2;UBERON:0000160,1.52e-12,17;UBERON:0004921,2.55e-10,118;UBERON:0002114,1.34e-09,2;UBERON:0001007,5.20e-09,145;UBERON:0001555,5.20e-09,145;UBERON:0007026,5.20e-09,145;UBERON:0004119,7.43e-08,160;UBERON:0000925,7.43e-08,160;UBERON:0006595,7.43e-08,160;UBERON:0004913,8.84e-08,1;UBERON:0003703,8.84e-08,1;UBERON:0001174,8.84e-08,1;UBERON:0004914,8.84e-08,1;UBERON:0001301,1.30e-07,1;UBERON:0001764,2.98e-07,1;UBERON:0001825,2.98e-07,1 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327447688744282,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245976877086227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.438519753291869,0.261435451024901,0,0,0,1.13345112812495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127612712494584,0.6069466851333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.7887322147588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.68426486367398,0,0,0.111443384277478,0,0,0,0,0,0,0,0,0,1.39473591775749,0.828851746593443,0,0,0,0,0.359473404589307,1.07412704805365,0,0,0,0,0,0,0,0,0.0874599999961957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0.0897576444097721,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,1.68798451622422,0,0,0,0.995261931078505,13.2686346755009,4.888241159469,0,0,0,0,0,0,0,0.586993856796269,0,0,3.62972148145992,0,0,0,0,0,0,0,0,0,0,0,0,0,3.31980669659857,0,0,0,0,0.0969890164884194,0,0.225980740780532,0,0,0,0,0,2.56143593687223,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,1.16495949527454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246277562248017,0,0.113312091520126,0,0,0,0,0,0,4.59185874041087,9.43225830597996,0.828478110694391,0,0,0.852548188666271,0,0,0,0,0,1.09937867375164,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192619830407303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.72035767449684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225630985047772,0,0,0,0,7.8363725695034,0,0,0,0,0,0,0.992422356778588,0,0.383287282918786,0,0,0,0,0.177404740325278,0,0,0,0,0.827356886187777,0,1.17739639275771,0,0,0.913158720509496,0,0,0,0,0,0,0,0,0,0,0.860454717640555,0,0,0,0,0,0,0,11.2872768657529,12.5575462731738,0,0,0,0,0,0,0,0,0,0.603851374266694,24.4642081202185,8.08670373864642,10.817297816315,0,30.1665980290081,0,0,0,0,0,0,0,4.46384846514144,0,2.16651690060754,2.19100916473955,0.458729283404541,0,0,0,0,9.52248312927721,0,0,0,0,0,0,0,0,0,0,0.303114792872958,0,0,0,3.83821167421766,1.42838658878244,0,0,0,0,0,0.435433495793923,0,0.26940821205835,11.977608300577,1.33064142618405,0,0,0,0,0,0.855690109280065,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327447688744282,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245976877086227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.438519753291869,0.261435451024901,0,0,0,1.13345112812495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127612712494584,0.6069466851333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.7887322147588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.68426486367398,0,0,0.111443384277478,0,0,0,0,0,0,0,0,0,1.39473591775749,0.828851746593443,0,0,0,0,0.359473404589307,1.07412704805365,0,0,0,0,0,0,0,0,0.0874599999961957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0.0897576444097721,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,1.68798451622422,0,0,0,0.995261931078505,13.2686346755009,4.888241159469,0,0,0,0,0,0,0,0.586993856796269,0,0,3.62972148145992,0,0,0,0,0,0,0,0,0,0,0,0,0,3.31980669659857,0,0,0,0,0.0969890164884194,0,0.225980740780532,0,0,0,0,0,2.56143593687223,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,1.16495949527454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246277562248017,0,0.113312091520126,0,0,0,0,0,0,4.59185874041087,9.43225830597996,0.828478110694391,0,0,0.852548188666271,0,0,0,0,0,1.09937867375164,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192619830407303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.72035767449684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225630985047772,0,0,0,0,7.8363725695034,0,0,0,0,0,0,0.992422356778588,0,0.383287282918786,0,0,0,0,0.177404740325278,0,0,0,0,0.827356886187777,0,1.17739639275771,0,0,0.913158720509496,0,0,0,0,0,0,0,0,0,0,0.860454717640555,0,0,0,0,0,0,0,11.2872768657529,12.5575462731738,0,0,0,0,0,0,0,0,0,0.603851374266694,24.4642081202185,8.08670373864642,10.817297816315,0,30.1665980290081,0,0,0,0,0,0,0,4.46384846514144,0,2.16651690060754,2.19100916473955,0.458729283404541,0,0,0,0,9.52248312927721,0,0,0,0,0,0,0,0,0,0,0.303114792872958,0,0,0,3.83821167421766,1.42838658878244,0,0,0,0,0,0.435433495793923,0,0.26940821205835,11.977608300577,1.33064142618405,0,0,0,0,0,0.855690109280065,0,0,0,0 | ||
|short_description=p6@TMC5 | |short_description=p6@TMC5 | ||
}} | }} |
Latest revision as of 23:50, 24 September 2015
Short description: | p6@TMC5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_TMC5_5end |
Coexpression cluster: | C2361_small_somatostatinoma_colon_signet_trachea_lung_temporal |
Association with transcript: | 213bp_to_ENST00000542583, uc010var.1_5end |
EntrezGene: | TMC5 |
HGNC: | 22999 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
peptide hormone secreting cell | 4.28e-08 | 1 |
enteroendocrine cell | 4.28e-08 | 1 |
type D enteroendocrine cell | 4.28e-08 | 1 |
somatostatin secreting cell | 4.28e-08 | 1 |
pancreatic D cell | 4.28e-08 | 1 |
progenitor cell of endocrine pancreas | 4.28e-08 | 1 |
Ontology term | p-value | n |
---|---|---|
small intestine | 3.98e-21 | 4 |
gastrointestinal system | 8.22e-15 | 25 |
open tracheal system trachea | 1.19e-13 | 2 |
throat | 2.11e-13 | 2 |
intestine | 1.52e-12 | 17 |
subdivision of digestive tract | 2.55e-10 | 118 |
duodenum | 1.34e-09 | 2 |
digestive system | 5.20e-09 | 145 |
digestive tract | 5.20e-09 | 145 |
primitive gut | 5.20e-09 | 145 |
endoderm-derived structure | 7.43e-08 | 160 |
endoderm | 7.43e-08 | 160 |
presumptive endoderm | 7.43e-08 | 160 |
hepatopancreatic ampulla | 8.84e-08 | 1 |
extrahepatic bile duct | 8.84e-08 | 1 |
common bile duct | 8.84e-08 | 1 |
duodenal papilla | 8.84e-08 | 1 |
epididymis | 1.30e-07 | 1 |
maxillary sinus | 2.98e-07 | 1 |
paranasal sinus | 2.98e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
signet ring cell adenocarcinoma | 2.88e-14 | 2 |
adenocarcinoma | 1.06e-08 | 25 |
somatostatinoma | 4.28e-08 | 1 |
cystadenocarcinoma | 6.80e-08 | 1 |
mucinous cystadenocarcinoma | 6.80e-08 | 1 |
paranasal sinus cancer | 2.98e-07 | 1 |
maxillary sinus cancer | 2.98e-07 | 1 |