FFCP PHASE1:Hg19::chr15:78913522..78913543,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1136 | |EntrezGene=1136 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1957 | |HGNC=1957 | ||
|TSSclassifier=strong | |||
|UniProt=P32297 | |UniProt=P32297 | ||
|association_with_transcript=-1bp_to_ENST00000326828_5end | |association_with_transcript=-1bp_to_ENST00000326828_5end | ||
|cluster_id=chr15:78913522..78913543,- | |||
|description=CAGE_peak_5_at_CHRNA3_5end | |description=CAGE_peak_5_at_CHRNA3_5end | ||
|id=chr15:78913522..78913543,- | |id=chr15:78913522..78913543,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000123;4.53e-19;2!CL:0000242;4.53e-19;2!CL:0000333;1.26e-17;5!CL:0000312;3.52e-08;5!CL:0000240;5.93e-07;6!CL:0000311;5.93e-07;6!CL:0000079;5.93e-07;6!CL:0000237;5.93e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000242,5.44e-19,2;CL:0000312,3.78e-08,5;CL:0000240,6.29e-07,6;CL:0000311,6.29e-07,6;CL:0000079,6.29e-07,6;CL:0000237,6.29e-07,6;CL:0000036,6.29e-07,6;CL:0000357,6.29e-07,6;CL:0000114,6.29e-07,6 | |||
|ontology_enrichment_development_v019=UBERON:0001045;4.14e-10;1!CL:0000357;5.93e-07;6!CL:0000114;5.93e-07;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:169;8.74e-15;6!DOID:3151;4.14e-10;1!DOID:3149;4.14e-10;1!DOID:171;4.45e-09;10 | |||
|ontology_enrichment_disease_v019_2=DOID:169,8.74e-15,6;DOID:3151,3.96e-10,1;DOID:3149,3.96e-10,1;DOID:171,4.45e-09,10 | |||
|ontology_enrichment_uberon=UBERON:0003075!5.54e-24!86;UBERON:0007284!5.54e-24!86;UBERON:0007023!8.95e-24!115;UBERON:0002346!1.67e-22!90;UBERON:0000073!1.05e-19!94;UBERON:0001016!1.05e-19!94;UBERON:0005743!1.08e-17!86;UBERON:0003056!6.11e-16!61;UBERON:0001049!1.65e-15!57;UBERON:0005068!1.65e-15!57;UBERON:0006241!1.65e-15!57;UBERON:0007135!1.65e-15!57;UBERON:0004121!1.26e-14!169;UBERON:0001017!1.80e-14!82;UBERON:0000924!4.82e-14!173;UBERON:0006601!4.82e-14!173;UBERON:0002616!2.42e-13!59;UBERON:0000153!4.29e-13!129;UBERON:0007811!4.29e-13!129;UBERON:0000955!1.43e-11!69;UBERON:0006238!1.43e-11!69;UBERON:0000033!6.49e-11!123;UBERON:0002780!1.03e-10!41;UBERON:0001890!1.03e-10!41;UBERON:0006240!1.03e-10!41;UBERON:0003080!2.26e-10!42;UBERON:0001894!4.07e-09!7;UBERON:0006222!4.07e-09!7;UBERON:0000020!1.08e-08!23;UBERON:0000966!1.23e-08!5;UBERON:0005388!1.23e-08!5;UBERON:0001802!1.23e-08!5;UBERON:0000970!2.33e-08!20;UBERON:0000064!2.67e-08!219;UBERON:0001032!3.02e-08!24;UBERON:0004456!3.02e-08!24;UBERON:0000063!4.11e-08!97;UBERON:0002104!7.05e-08!21;UBERON:0007625!2.60e-07!11;UBERON:0002020!4.96e-07!34;UBERON:0003528!4.96e-07!34;UBERON:0000019!6.38e-07!19;UBERON:0000047!6.38e-07!19;UBERON:0004088!6.38e-07!19;UBERON:0003072!6.38e-07!19;UBERON:0003071!6.38e-07!19;UBERON:0004128!6.38e-07!19;UBERON:0002420!9.17e-07!9;UBERON:0007245!9.17e-07!9;UBERON:0010009!9.17e-07!9;UBERON:0010011!9.17e-07!9;UBERON:0000454!9.17e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;7.77e-20;2!UBERON:0005058;7.77e-20;2!UBERON:0009113;7.77e-20;2!UBERON:0001905;2.73e-19;2!UBERON:0002757;2.73e-19;2!UBERON:0010134;2.73e-19;2!UBERON:0005408;2.73e-19;2!UBERON:0001899;2.73e-19;2!UBERON:0000013;1.26e-17;5!UBERON:0002410;1.26e-17;5!UBERON:0003296;4.06e-10;4!UBERON:0010133;4.06e-10;4!UBERON:0002784;4.06e-10;4!UBERON:0001154;4.14e-10;1!UBERON:0001153;4.14e-10;1!UBERON:0009854;4.14e-10;1!UBERON:0000010;4.93e-10;8!UBERON:0004177;1.76e-08;5!UBERON:0005057;1.76e-08;5!UBERON:0000966;3.16e-08;5!UBERON:0005388;3.16e-08;5!UBERON:0001802;3.16e-08;5!UBERON:0004907;4.45e-08;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001905,2.86e-19,2;UBERON:0002757,2.86e-19,2;UBERON:0010134,2.86e-19,2;UBERON:0005408,2.86e-19,2;UBERON:0001899,2.86e-19,2;UBERON:0000013,1.26e-17,5;UBERON:0002410,1.26e-17,5;UBERON:0002370,2.18e-10,4;UBERON:0005058,2.18e-10,4;UBERON:0009113,2.18e-10,4;UBERON:0003295,2.18e-10,4;UBERON:0005562,2.18e-10,4;UBERON:0003296,4.15e-10,4;UBERON:0010133,4.15e-10,4;UBERON:0002784,4.15e-10,4;UBERON:0001154,4.75e-10,1;UBERON:0001153,4.75e-10,1;UBERON:0001045,4.75e-10,1;UBERON:0000010,4.93e-10,8;UBERON:0004907,4.53e-08,5;UBERON:0003351,3.34e-07,6;UBERON:0000966,5.58e-07,6;UBERON:0005388,5.58e-07,6;UBERON:0001802,5.58e-07,6 | |||
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| ||
|short_description=p5@CHRNA3 | |short_description=p5@CHRNA3 | ||
}} | }} |
Latest revision as of 07:13, 19 September 2015
Short description: | p5@CHRNA3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_CHRNA3_5end |
Coexpression cluster: | NA |
Association with transcript: | -1bp_to_ENST00000326828_5end |
EntrezGene: | CHRNA3 |
HGNC: | 1957 |
UniProt: | P32297 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Merkel cell | 5.44e-19 | 2 |
keratinocyte | 3.78e-08 | 5 |
stratified squamous epithelial cell | 6.29e-07 | 6 |
keratin accumulating cell | 6.29e-07 | 6 |
stratified epithelial cell | 6.29e-07 | 6 |
keratinizing barrier epithelial cell | 6.29e-07 | 6 |
epithelial fate stem cell | 6.29e-07 | 6 |
stratified epithelial stem cell | 6.29e-07 | 6 |
surface ectodermal cell | 6.29e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
pineal body | 2.86e-19 | 2 |
regional part of epithalamus | 2.86e-19 | 2 |
secretory circumventricular organ | 2.86e-19 | 2 |
circumventricular organ | 2.86e-19 | 2 |
epithalamus | 2.86e-19 | 2 |
sympathetic nervous system | 1.26e-17 | 5 |
autonomic nervous system | 1.26e-17 | 5 |
thymus | 2.18e-10 | 4 |
hemolymphoid system gland | 2.18e-10 | 4 |
thymic region | 2.18e-10 | 4 |
pharyngeal gland | 2.18e-10 | 4 |
thymus primordium | 2.18e-10 | 4 |
gland of diencephalon | 4.15e-10 | 4 |
neuroendocrine gland | 4.15e-10 | 4 |
regional part of diencephalon | 4.15e-10 | 4 |
vermiform appendix | 4.75e-10 | 1 |
caecum | 4.75e-10 | 1 |
midgut | 4.75e-10 | 1 |
peripheral nervous system | 4.93e-10 | 8 |
lower digestive tract | 4.53e-08 | 5 |
pharyngeal epithelium | 3.34e-07 | 6 |
retina | 5.58e-07 | 6 |
photoreceptor array | 5.58e-07 | 6 |
posterior segment of eyeball | 5.58e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
neuroendocrine tumor | 8.74e-15 | 6 |
skin squamous cell carcinoma | 3.96e-10 | 1 |
keratoacanthoma | 3.96e-10 | 1 |
neuroectodermal tumor | 4.45e-09 | 10 |