FFCP PHASE1:Hg19::chr15:26825537..26825559,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2562 | |EntrezGene=2562 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4083 | |HGNC=4083 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=258bp_to_ENST00000557765_5end | |association_with_transcript=258bp_to_ENST00000557765_5end | ||
|cluster_id=chr15:26825537..26825559,- | |||
|description=CAGE_peak_9_at_GABRB3_5end | |description=CAGE_peak_9_at_GABRB3_5end | ||
|id=chr15:26825537..26825559,- | |id=chr15:26825537..26825559,- | ||
|ontology_enrichment_celltype=CL:0002322!1.50e-13!5;CL:0000540!1.18e-11!6;CL:0000031!1.18e-11!6;CL:0000404!1.18e-11!6;CL:0000047!1.32e-08!8 | |ontology_enrichment_celltype=CL:0002322!1.50e-13!5;CL:0000540!1.18e-11!6;CL:0000031!1.18e-11!6;CL:0000404!1.18e-11!6;CL:0000047!1.32e-08!8 | ||
|ontology_enrichment_celltype_v019=CL:0000540;4.11e-23;6!CL:0000404;4.11e-23;6!CL:0002322;7.01e-08;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,3.88e-23,6;CL:0000031,3.88e-23,6;CL:0000404,3.88e-23,6;CL:0000047,1.22e-17,8;CL:0002322,7.01e-08,5 | |||
|ontology_enrichment_development_v019=CL:0000031;4.11e-23;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005743!2.16e-29!86;UBERON:0001017!1.23e-27!82;UBERON:0000073!2.74e-27!94;UBERON:0001016!2.74e-27!94;UBERON:0001893!5.80e-26!34;UBERON:0001869!2.48e-25!32;UBERON:0002791!2.45e-24!33;UBERON:0001950!2.42e-23!20;UBERON:0002780!5.21e-23!41;UBERON:0001890!5.21e-23!41;UBERON:0006240!5.21e-23!41;UBERON:0003080!2.49e-22!42;UBERON:0001049!3.81e-22!57;UBERON:0005068!3.81e-22!57;UBERON:0006241!3.81e-22!57;UBERON:0007135!3.81e-22!57;UBERON:0003056!1.41e-21!61;UBERON:0002020!3.33e-21!34;UBERON:0003528!3.33e-21!34;UBERON:0002619!5.81e-21!22;UBERON:0003075!2.90e-20!86;UBERON:0007284!2.90e-20!86;UBERON:0002346!5.50e-19!90;UBERON:0000955!2.16e-18!69;UBERON:0006238!2.16e-18!69;UBERON:0000956!4.40e-18!25;UBERON:0000203!4.40e-18!25;UBERON:0002616!1.63e-17!59;UBERON:0004121!2.75e-16!169;UBERON:0000924!1.17e-15!173;UBERON:0006601!1.17e-15!173;UBERON:0001871!1.33e-14!7;UBERON:0000200!4.18e-14!6;UBERON:0000033!1.57e-13!123;UBERON:0000153!1.63e-13!129;UBERON:0007811!1.63e-13!129;UBERON:0007023!6.74e-13!115;UBERON:0002420!5.57e-10!9;UBERON:0007245!5.57e-10!9;UBERON:0010009!5.57e-10!9;UBERON:0010011!5.57e-10!9;UBERON:0000454!5.57e-10!9;UBERON:0002771!5.47e-08!3;UBERON:0000025!5.31e-07!194 | |||
|ontology_enrichment_uberon_v019=UBERON:0001871;8.22e-20;6!UBERON:0002771;7.05e-18;2!UBERON:0001876;1.07e-17;2!UBERON:0001950;7.36e-15;20!UBERON:0002619;1.22e-13;22!UBERON:0000956;3.71e-12;25!UBERON:0000203;3.71e-12;25!UBERON:0001893;1.40e-09;34!UBERON:0003528;2.91e-09;34!UBERON:0002020;2.91e-09;34!UBERON:0002791;9.82e-09;32!UBERON:0001869;9.82e-09;32!UBERON:0001872;7.01e-08;5!UBERON:0000349;7.01e-08;5!UBERON:0000200;7.80e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001871,7.84e-20,6;UBERON:0002771,7.67e-18,2;UBERON:0001876,9.07e-18,2;UBERON:0001950,7.53e-15,20;UBERON:0002619,1.25e-13,22;UBERON:0000956,3.79e-12,25;UBERON:0000203,3.79e-12,25;UBERON:0001017,2.04e-10,81;UBERON:0002791,9.89e-10,32;UBERON:0001869,9.89e-10,32;UBERON:0001016,1.94e-09,89;UBERON:0003528,3.24e-09,34;UBERON:0002020,3.24e-09,34;UBERON:0001893,3.24e-09,34;UBERON:0000349,6.55e-08,5;UBERON:0001872,7.49e-08,5;UBERON:0002780,8.52e-08,41;UBERON:0001890,8.52e-08,41;UBERON:0003080,8.52e-08,41;UBERON:0006240,8.52e-08,41;UBERON:0000200,8.02e-07,6 | |||
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| ||
|short_description=p9@GABRB3 | |short_description=p9@GABRB3 | ||
}} | }} |
Latest revision as of 01:30, 17 September 2015
Short description: | p9@GABRB3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_GABRB3_5end |
Coexpression cluster: | NA |
Association with transcript: | 258bp_to_ENST00000557765_5end |
EntrezGene: | GABRB3 |
HGNC: | 4083 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 3.88e-23 | 6 |
neuroblast | 3.88e-23 | 6 |
electrically signaling cell | 3.88e-23 | 6 |
neuronal stem cell | 1.22e-17 | 8 |
embryonic stem cell | 7.01e-08 | 5 |
Ontology term | p-value | n |
---|---|---|
temporal lobe | 7.84e-20 | 6 |
middle temporal gyrus | 7.67e-18 | 2 |
amygdala | 9.07e-18 | 2 |
neocortex | 7.53e-15 | 20 |
regional part of cerebral cortex | 1.25e-13 | 22 |
cerebral cortex | 3.79e-12 | 25 |
pallium | 3.79e-12 | 25 |
central nervous system | 2.04e-10 | 81 |
regional part of telencephalon | 9.89e-10 | 32 |
cerebral hemisphere | 9.89e-10 | 32 |
nervous system | 1.94e-09 | 89 |
brain grey matter | 3.24e-09 | 34 |
gray matter | 3.24e-09 | 34 |
telencephalon | 3.24e-09 | 34 |
limbic system | 6.55e-08 | 5 |
parietal lobe | 7.49e-08 | 5 |
regional part of forebrain | 8.52e-08 | 41 |
forebrain | 8.52e-08 | 41 |
anterior neural tube | 8.52e-08 | 41 |
future forebrain | 8.52e-08 | 41 |
gyrus | 8.02e-07 | 6 |