FFCP PHASE1:Hg19::chr10:135043702..135043729,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8433 | |EntrezGene=8433 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12634 | |HGNC=12634 | ||
|TSSclassifier=strong | |||
|UniProt=Q5T230 | |UniProt=Q5T230 | ||
|association_with_transcript=-48bp_to_ENST00000304477,NM_003577,uc001lmc.2_5end | |association_with_transcript=-48bp_to_ENST00000304477,NM_003577,uc001lmc.2_5end | ||
|cluster_id=chr10:135043702..135043729,+ | |||
|coexpression_cluster_id=C128 | |||
|description=CAGE_peak_1_at_UTF1_5end | |description=CAGE_peak_1_at_UTF1_5end | ||
|id=chr10:135043702..135043729,+ | |id=chr10:135043702..135043729,+ | ||
|ontology_enrichment_celltype=CL:0002322!1.21e-16!5;CL:0002057!1.94e-08!42;CL:0000039!7.30e-08!7;CL:0000586!7.30e-08!7;CL:0000860!1.08e-07!45;CL:0002393!1.28e-07!9;CL:0002397!1.28e-07!9 | |ontology_enrichment_celltype=CL:0002322!1.21e-16!5;CL:0002057!1.94e-08!42;CL:0000039!7.30e-08!7;CL:0000586!7.30e-08!7;CL:0000860!1.08e-07!45;CL:0002393!1.28e-07!9;CL:0002397!1.28e-07!9 | ||
|ontology_enrichment_celltype_v019=CL:0002322;4.44e-41;5!CL:0000039;2.29e-19;7!CL:0000586;2.29e-19;7!CL:0002321;1.23e-13;15!CL:0000540;1.48e-12;6!CL:0000404;1.48e-12;6!CL:0000148;5.59e-08;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,4.44e-41,5;CL:0000039,2.29e-19,7;CL:0000586,2.29e-19,7;CL:0000540,1.42e-12,6;CL:0000031,1.42e-12,6;CL:0000404,1.42e-12,6;CL:0000047,1.46e-09,8;CL:0000148,5.59e-08,10;CL:0000541,5.59e-08,10 | |||
|ontology_enrichment_development_v019=UBERON:0009117;2.47e-39;10!UBERON:0005564;2.47e-39;10!CL:0000031;1.48e-12;6 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3095;2.62e-09;22!DOID:2994;2.62e-09;22!DOID:3371;5.28e-09;1!DOID:4549;5.28e-09;1!DOID:5861;5.28e-09;1!DOID:6496;5.28e-09;1!DOID:225;5.28e-09;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,2.62e-09,22;DOID:2994,2.62e-09,22;DOID:225,4.87e-09,1;DOID:3371,5.28e-09,1;DOID:4549,5.28e-09,1;DOID:5861,5.28e-09,1;DOID:6496,5.28e-09,1 | |||
|ontology_enrichment_uberon=UBERON:0000473!1.89e-14!8;UBERON:0003135!2.83e-10!11;UBERON:0000991!1.30e-08!21;UBERON:0009196!1.30e-08!21;UBERON:0009117!1.30e-08!21;UBERON:0005564!1.30e-08!21;UBERON:0004176!3.76e-08!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;1.66e-36;8!UBERON:0003135;1.87e-26;11!UBERON:0000991;2.30e-18;21!UBERON:0003101;5.25e-13;22!UBERON:0000079;5.25e-13;22!UBERON:0000922;4.44e-08;49!UBERON:0002323;4.06e-07;45 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,1.76e-36,8;UBERON:0003135,1.96e-26,11;UBERON:0000991,2.37e-18,21;UBERON:0009196,2.37e-18,21;UBERON:0009117,2.37e-18,21;UBERON:0005564,2.37e-18,21;UBERON:0004176,1.75e-17,22;UBERON:0003101,5.36e-13,22;UBERON:0000079,5.36e-13,22;UBERON:0002323,5.99e-08,46;UBERON:0003133,1.39e-07,48;UBERON:0004458,2.06e-07,49 | |||
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| ||
|short_description=p1@UTF1 | |short_description=p1@UTF1 | ||
}} | }} |
Latest revision as of 04:45, 17 September 2015
Short description: | p1@UTF1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_UTF1_5end |
Coexpression cluster: | C128_testicular_choriocarcinoma_H9_teratocarcinoma_pancreatic_iPS_HES3GFP |
Association with transcript: | -48bp_to_ENST00000304477, NM_003577, uc001lmc.2_5end |
EntrezGene: | UTF1 |
HGNC: | 12634 |
UniProt: | Q5T230 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 4.44e-41 | 5 |
germ line cell | 2.29e-19 | 7 |
germ cell | 2.29e-19 | 7 |
neuron | 1.42e-12 | 6 |
neuroblast | 1.42e-12 | 6 |
electrically signaling cell | 1.42e-12 | 6 |
neuronal stem cell | 1.46e-09 | 8 |
melanocyte | 5.59e-08 | 10 |
melanoblast | 5.59e-08 | 10 |
Ontology term | p-value | n |
---|---|---|
testis | 1.76e-36 | 8 |
male reproductive organ | 1.96e-26 | 11 |
gonad | 2.37e-18 | 21 |
indifferent external genitalia | 2.37e-18 | 21 |
indifferent gonad | 2.37e-18 | 21 |
gonad primordium | 2.37e-18 | 21 |
external genitalia | 1.75e-17 | 22 |
male organism | 5.36e-13 | 22 |
male reproductive system | 5.36e-13 | 22 |
body cavity | 5.99e-08 | 46 |
reproductive organ | 1.39e-07 | 48 |
body cavity or lining | 2.06e-07 | 49 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 2.62e-09 | 22 |
germ cell cancer | 2.62e-09 | 22 |
syndrome | 4.87e-09 | 1 |
chondrosarcoma | 5.28e-09 | 1 |
extraosseous chondrosarcoma | 5.28e-09 | 1 |
myxoid chondrosarcoma | 5.28e-09 | 1 |
extraskeletal myxoid chondrosarcoma | 5.28e-09 | 1 |