FFCP PHASE1:Mm9::chr4:62163210..62163216,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=72748 | |EntrezGene=72748 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=88 | |||
|TSSclassifier=NA | |||
|UniProt=Q9CYW4 | |UniProt=Q9CYW4 | ||
|association_with_transcript=17bp_to_NM_024257,uc008tey.1_5end | |association_with_transcript=17bp_to_NM_024257,uc008tey.1_5end | ||
|cluster_id=chr4:62163210..62163216,- | |||
|description=CAGE_peak_3_at_Hdhd3_5end | |description=CAGE_peak_3_at_Hdhd3_5end | ||
|id=chr4:62163210..62163216,- | |id=chr4:62163210..62163216,- | ||
|ontology_enrichment_celltype=CL:0002563!4.81e-18!9;CL:0002251!4.81e-18!9;CL:0000066!3.35e-17!25;CL:0000075!3.51e-14!7;CL:0000239!7.49e-13!6;CL:0000677!7.49e-13!6;CL:0000212!7.49e-13!6;CL:0000584!7.49e-13!6;CL:0000223!3.49e-12!20;CL:0002076!6.01e-10!15;CL:0000473!4.53e-07!3;CL:0000627!4.53e-07!3;CL:0000682!4.53e-07!3;CL:0002250!9.13e-07!3 | |ontology_enrichment_celltype=CL:0002563!4.81e-18!9;CL:0002251!4.81e-18!9;CL:0000066!3.35e-17!25;CL:0000075!3.51e-14!7;CL:0000239!7.49e-13!6;CL:0000677!7.49e-13!6;CL:0000212!7.49e-13!6;CL:0000584!7.49e-13!6;CL:0000223!3.49e-12!20;CL:0002076!6.01e-10!15;CL:0000473!4.53e-07!3;CL:0000627!4.53e-07!3;CL:0000682!4.53e-07!3;CL:0002250!9.13e-07!3 | ||
|ontology_enrichment_celltype_v019_2=CL:0002563,1.85e-44,9;CL:0002251,1.85e-44,9;CL:0000239,6.96e-31,6;CL:0000677,6.96e-31,6;CL:0000584,6.96e-31,6;CL:0000066,1.66e-27,25;CL:0000075,1.99e-26,7;CL:0002076,2.96e-26,15;CL:0000223,2.07e-19,20;CL:0000682,7.32e-16,3;CL:0002250,4.47e-15,3;CL:0000473,4.42e-07,7 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000344!1.52e-24!15;UBERON:0001242!4.32e-21!13;UBERON:0000060!4.32e-21!13;UBERON:0001262!4.32e-21!13;UBERON:0004786!4.32e-21!13;UBERON:0003350!4.81e-18!9;UBERON:0004808!4.81e-18!9;UBERON:0001277!4.81e-18!9;UBERON:0000485!2.13e-17!11;UBERON:0004923!7.45e-14!24;UBERON:0000160!2.59e-13!43;UBERON:0005409!2.96e-10!59;UBERON:0001007!3.05e-10!128;UBERON:0001555!3.05e-10!128;UBERON:0007026!3.05e-10!128;UBERON:0004119!6.02e-10!130;UBERON:0000925!6.02e-10!130;UBERON:0006595!6.02e-10!130;UBERON:0003929!6.58e-09!55;UBERON:0004921!9.28e-09!126;UBERON:0004185!9.28e-09!126;UBERON:0000490!1.92e-07!66;UBERON:0005911!7.35e-07!69 | |ontology_enrichment_uberon=UBERON:0000344!1.52e-24!15;UBERON:0001242!4.32e-21!13;UBERON:0000060!4.32e-21!13;UBERON:0001262!4.32e-21!13;UBERON:0004786!4.32e-21!13;UBERON:0003350!4.81e-18!9;UBERON:0004808!4.81e-18!9;UBERON:0001277!4.81e-18!9;UBERON:0000485!2.13e-17!11;UBERON:0004923!7.45e-14!24;UBERON:0000160!2.59e-13!43;UBERON:0005409!2.96e-10!59;UBERON:0001007!3.05e-10!128;UBERON:0001555!3.05e-10!128;UBERON:0007026!3.05e-10!128;UBERON:0004119!6.02e-10!130;UBERON:0000925!6.02e-10!130;UBERON:0006595!6.02e-10!130;UBERON:0003929!6.58e-09!55;UBERON:0004921!9.28e-09!126;UBERON:0004185!9.28e-09!126;UBERON:0000490!1.92e-07!66;UBERON:0005911!7.35e-07!69 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000344,5.00e-54,15;UBERON:0001242,4.19e-45,13;UBERON:0001262,4.19e-45,13;UBERON:0004786,4.19e-45,13;UBERON:0003350,1.85e-44,9;UBERON:0004808,1.85e-44,9;UBERON:0001277,1.85e-44,9;UBERON:0000485,3.43e-36,11;UBERON:0004923,4.01e-33,24;UBERON:0000160,1.80e-21,31;UBERON:0005409,1.44e-13,47;UBERON:0001962,2.13e-10,2;UBERON:0001961,2.13e-10,2;UBERON:0001744,2.13e-10,2;UBERON:0003929,9.59e-08,55;UBERON:0001007,2.19e-07,116;UBERON:0001555,2.19e-07,116;UBERON:0007026,2.19e-07,116;UBERON:0000331,2.58e-07,3;UBERON:0002116,2.58e-07,3;UBERON:0001204,2.58e-07,3;UBERON:0001168,2.58e-07,3;UBERON:0004119,3.20e-07,118;UBERON:0000925,3.20e-07,118;UBERON:0006595,3.20e-07,118;UBERON:0002465,3.22e-07,3 | |||
|phase1_expression=0,17.0997949743287,20.0199665331396,18.4503168897166,24.543890767371,10.5763941304491,6.54115393667472,0.129123323441576,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,1.27993938234725,1.83527424853736,16.0784949952206,9.47676391549965,7.11055067863434,1.52018735565099,2.26827116783938,0.886922042621219,0,0,0,7.79899373328441,1.16364251750945,5.9209113316087,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.285650984403804,0,0,0.0958454710182364,0,0,0,0,0,0,0,0,0,0,0,0,0,0.075726193333184,0,0.289864488701678,0.860423876981386,0,0.539703191637817,0,0.448026887097336,0.280888840263504,0,0,0,0.281686839553361,0,0,0,0,0,0,0.45673551887624,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.510914110417183,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0680364991513279,0,0,0,0,0.189106080167819,0,0,0,0,0,0,0,0.257347907114715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32225283331772,0,0,0,0,0.444756087689741,0.190225626112559,0,0,0,0.198956472041151,0.19496408711912,0,0.648414149624083,0.995706366271836,0,0,0,0,0,0,0.0632365371242573,0,0,0,1.1858105083486,0,0,0,0,0,0,0,0.162135226775035,0,0,0,0.312037673114561,0.505157755894224,0.179397413521912,0.482443521363367,0,0,0,0,0,0,0,0,0,0,0,0.163863314715738,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.108005340821801,0.209088296014469,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.104859344425711,0,0,0,0,0,0.129920822977795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,17.0997949743287,20.0199665331396,18.4503168897166,24.543890767371,10.5763941304491,6.54115393667472,0.129123323441576,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,1.27993938234725,1.83527424853736,16.0784949952206,9.47676391549965,7.11055067863434,1.52018735565099,2.26827116783938,0.886922042621219,0,0,0,7.79899373328441,1.16364251750945,5.9209113316087,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.285650984403804,0,0,0.0958454710182364,0,0,0,0,0,0,0,0,0,0,0,0,0,0.075726193333184,0,0.289864488701678,0.860423876981386,0,0.539703191637817,0,0.448026887097336,0.280888840263504,0,0,0,0.281686839553361,0,0,0,0,0,0,0.45673551887624,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.510914110417183,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0680364991513279,0,0,0,0,0.189106080167819,0,0,0,0,0,0,0,0.257347907114715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32225283331772,0,0,0,0,0.444756087689741,0.190225626112559,0,0,0,0.198956472041151,0.19496408711912,0,0.648414149624083,0.995706366271836,0,0,0,0,0,0,0.0632365371242573,0,0,0,1.1858105083486,0,0,0,0,0,0,0,0.162135226775035,0,0,0,0.312037673114561,0.505157755894224,0.179397413521912,0.482443521363367,0,0,0,0,0,0,0,0,0,0,0,0.163863314715738,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.108005340821801,0.209088296014469,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.104859344425711,0,0,0,0,0,0.129920822977795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p3@Hdhd3 | |short_description=p3@Hdhd3 | ||
}} | }} |
Latest revision as of 04:00, 27 September 2015
Short description: | p3@Hdhd3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Hdhd3_5end |
Coexpression cluster: | MCL_coexpression_mm9:88 |
Association with transcript: | 17bp_to_NM_024257, uc008tey.1_5end |
EntrezGene: | Hdhd3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 1.85e-44 | 9 |
epithelial cell of alimentary canal | 1.85e-44 | 9 |
brush border epithelial cell | 6.96e-31 | 6 |
gut absorptive cell | 6.96e-31 | 6 |
enterocyte | 6.96e-31 | 6 |
epithelial cell | 1.66e-27 | 25 |
columnar/cuboidal epithelial cell | 1.99e-26 | 7 |
endo-epithelial cell | 2.96e-26 | 15 |
endodermal cell | 2.07e-19 | 20 |
M cell of gut | 7.32e-16 | 3 |
intestinal crypt stem cell | 4.47e-15 | 3 |
defensive cell | 4.42e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
mucosa | 5.00e-54 | 15 |
intestinal mucosa | 4.19e-45 | 13 |
wall of intestine | 4.19e-45 | 13 |
gastrointestinal system mucosa | 4.19e-45 | 13 |
epithelium of mucosa | 1.85e-44 | 9 |
gastrointestinal system epithelium | 1.85e-44 | 9 |
intestinal epithelium | 1.85e-44 | 9 |
simple columnar epithelium | 3.43e-36 | 11 |
organ component layer | 4.01e-33 | 24 |
intestine | 1.80e-21 | 31 |
gastrointestinal system | 1.44e-13 | 47 |
gut-associated lymphoid tissue | 2.13e-10 | 2 |
mucosa-associated lymphoid tissue | 2.13e-10 | 2 |
lymphoid tissue | 2.13e-10 | 2 |
gut epithelium | 9.59e-08 | 55 |
digestive system | 2.19e-07 | 116 |
digestive tract | 2.19e-07 | 116 |
primitive gut | 2.19e-07 | 116 |
ileal mucosa | 2.58e-07 | 3 |
ileum | 2.58e-07 | 3 |
mucosa of small intestine | 2.58e-07 | 3 |
wall of small intestine | 2.58e-07 | 3 |
endoderm-derived structure | 3.20e-07 | 118 |
endoderm | 3.20e-07 | 118 |
presumptive endoderm | 3.20e-07 | 118 |
lymphoid system | 3.22e-07 | 3 |