FFCP PHASE1:Hg19::chr10:105824310..105824328,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1308 | |EntrezGene=1308 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2194 | |HGNC=2194 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-4bp_to_ENST00000488320_5end | |association_with_transcript=-4bp_to_ENST00000488320_5end | ||
|cluster_id=chr10:105824310..105824328,- | |||
|coexpression_cluster_id=C640 | |||
|description=CAGE_peak_12_at_COL17A1_5end | |description=CAGE_peak_12_at_COL17A1_5end | ||
|id=chr10:105824310..105824328,- | |id=chr10:105824310..105824328,- | ||
|ontology_enrichment_celltype=CL:0002076!2.68e-12!43;CL:0002159!2.95e-12!13;CL:0000244!2.55e-11!4;CL:0000731!2.55e-11!4;CL:0000066!5.06e-10!254;CL:0002621!1.81e-09!3;CL:0000622!1.95e-09!5;CL:0000349!3.12e-09!3;CL:0002577!3.12e-09!3;CL:0002541!3.39e-09!3;CL:0000223!6.13e-09!59;CL:0002251!9.47e-09!21;CL:0000154!7.62e-08!6 | |ontology_enrichment_celltype=CL:0002076!2.68e-12!43;CL:0002159!2.95e-12!13;CL:0000244!2.55e-11!4;CL:0000731!2.55e-11!4;CL:0000066!5.06e-10!254;CL:0002621!1.81e-09!3;CL:0000622!1.95e-09!5;CL:0000349!3.12e-09!3;CL:0002577!3.12e-09!3;CL:0002541!3.39e-09!3;CL:0000223!6.13e-09!59;CL:0002251!9.47e-09!21;CL:0000154!7.62e-08!6 | ||
|ontology_enrichment_celltype_v019=CL:0002621;7.89e-24;3!CL:0002577;1.78e-23;3!CL:0000349;4.78e-19;19!CL:0000244;1.66e-17;4!CL:0000731;1.66e-17;4!CL:0002076;4.52e-15;42!CL:0000622;8.13e-15;5!CL:0000154;1.94e-12;6!CL:0002623;9.03e-12;3!CL:0002231;1.27e-11;3!CL:0002541;2.20e-11;3!CL:0002251;1.05e-09;20!CL:0000150;1.87e-08;9!CL:0002537;4.49e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002621,5.35e-24,3;CL:0002577,2.53e-23,3;CL:0000349,4.99e-19,19;CL:0000244,1.18e-17,4;CL:0000731,1.18e-17,4;CL:0002076,4.33e-17,42;CL:0000622,1.00e-14,5;CL:0000154,2.31e-12,6;CL:0000223,6.33e-12,58;CL:0002623,9.28e-12,3;CL:0002231,1.49e-11,3;CL:0002541,2.38e-11,3;CL:0002251,9.66e-10,20;CL:0000150,2.10e-08,9;CL:0000066,1.54e-07,253;CL:0002537,3.92e-07,5 | |||
|ontology_enrichment_development_v019=CL:0000223;8.49e-07;58 | |||
|ontology_enrichment_disease=DOID:1749!1.10e-07!14 | |ontology_enrichment_disease=DOID:1749!1.10e-07!14 | ||
|ontology_enrichment_disease_v019=DOID:3151;7.26e-09;1!DOID:3149;7.26e-09;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3151,1.16e-08,1;DOID:3149,1.16e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0005631!5.51e-22!14;UBERON:0000158!5.51e-22!14;UBERON:0003124!4.40e-19!7;UBERON:0004119!4.41e-14!169;UBERON:0000925!4.41e-14!169;UBERON:0006595!4.41e-14!169;UBERON:0000365!1.98e-13!5;UBERON:0000161!8.60e-12!35;UBERON:0000478!1.05e-11!24;UBERON:0001987!1.35e-11!4;UBERON:0004340!1.35e-11!4;UBERON:0005910!4.02e-11!6;UBERON:0000166!5.17e-11!21;UBERON:0001949!1.81e-09!3;UBERON:0000165!2.45e-09!28;UBERON:0000930!2.45e-09!28;UBERON:0000476!3.39e-09!3;UBERON:0000920!3.39e-09!3;UBERON:0001004!1.89e-08!72;UBERON:0000974!2.93e-08!10;UBERON:0004923!5.61e-08!57;UBERON:0003102!5.99e-08!95 | |ontology_enrichment_uberon=UBERON:0005631!5.51e-22!14;UBERON:0000158!5.51e-22!14;UBERON:0003124!4.40e-19!7;UBERON:0004119!4.41e-14!169;UBERON:0000925!4.41e-14!169;UBERON:0006595!4.41e-14!169;UBERON:0000365!1.98e-13!5;UBERON:0000161!8.60e-12!35;UBERON:0000478!1.05e-11!24;UBERON:0001987!1.35e-11!4;UBERON:0004340!1.35e-11!4;UBERON:0005910!4.02e-11!6;UBERON:0000166!5.17e-11!21;UBERON:0001949!1.81e-09!3;UBERON:0000165!2.45e-09!28;UBERON:0000930!2.45e-09!28;UBERON:0000476!3.39e-09!3;UBERON:0000920!3.39e-09!3;UBERON:0001004!1.89e-08!72;UBERON:0000974!2.93e-08!10;UBERON:0004923!5.61e-08!57;UBERON:0003102!5.99e-08!95 | ||
|ontology_enrichment_uberon_v019=UBERON:0001949;7.89e-24;3!UBERON:0000486;2.11e-22;12!UBERON:0001987;9.08e-18;4!UBERON:0000478;6.35e-15;24!UBERON:0000365;3.99e-14;5!UBERON:0005631;1.29e-12;10!UBERON:0000158;1.29e-12;10!UBERON:0005910;7.26e-12;6!UBERON:0003124;2.20e-11;3!UBERON:0000920;2.20e-11;3!UBERON:0003929;1.53e-10;7!UBERON:0000161;3.16e-10;19!UBERON:0000166;3.16e-10;19!UBERON:0000165;1.20e-09;28!UBERON:0003350;2.76e-09;8!UBERON:0001828;2.76e-09;8!UBERON:0000077;4.92e-07;27 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003124,3.45e-27,7;UBERON:0005631,4.45e-26,14;UBERON:0000158,4.45e-26,14;UBERON:0001949,5.35e-24,3;UBERON:0001987,1.18e-17,4;UBERON:0004340,1.18e-17,4;UBERON:0000478,6.56e-15,24;UBERON:0000365,3.04e-14,5;UBERON:0000161,5.85e-13,36;UBERON:0000166,1.84e-12,22;UBERON:0004119,2.79e-12,160;UBERON:0000925,2.79e-12,160;UBERON:0006595,2.79e-12,160;UBERON:0005910,5.79e-12,6;UBERON:0000920,2.38e-11,3;UBERON:0004923,4.73e-10,66;UBERON:0006554,2.34e-09,47;UBERON:0003350,2.39e-09,8;UBERON:0001828,2.39e-09,8;UBERON:0000165,2.49e-09,29;UBERON:0000930,2.49e-09,29;UBERON:0003102,3.73e-09,99;UBERON:0001008,3.86e-09,48;UBERON:0001004,3.09e-07,74 | |||
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| ||
|short_description=p12@COL17A1 | |short_description=p12@COL17A1 | ||
}} | }} |
Latest revision as of 04:52, 16 September 2015
Short description: | p12@COL17A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_12_at_COL17A1_5end |
Coexpression cluster: | C640_amniotic_salivary_chorionic_Keratinocyte_Urothelial_Prostate_Mammary |
Association with transcript: | -4bp_to_ENST00000488320_5end |
EntrezGene: | COL17A1 |
HGNC: | 2194 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
gingival epithelial cell | 5.35e-24 | 3 |
placental epithelial cell | 2.53e-23 | 3 |
extraembryonic cell | 4.99e-19 | 19 |
transitional epithelial cell | 1.18e-17 | 4 |
urothelial cell | 1.18e-17 | 4 |
endo-epithelial cell | 4.33e-17 | 42 |
acinar cell | 1.00e-14 | 5 |
protein secreting cell | 2.31e-12 | 6 |
endodermal cell | 6.33e-12 | 58 |
acinar cell of salivary gland | 9.28e-12 | 3 |
epithelial cell of prostate | 1.49e-11 | 3 |
chorionic membrane mesenchymal stem cell | 2.38e-11 | 3 |
epithelial cell of alimentary canal | 9.66e-10 | 20 |
glandular epithelial cell | 2.10e-08 | 9 |
epithelial cell | 1.54e-07 | 253 |
amnion mesenchymal stem cell | 3.92e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
chorion | 3.45e-27 | 7 |
extraembryonic membrane | 4.45e-26 | 14 |
membranous layer | 4.45e-26 | 14 |
gingival epithelium | 5.35e-24 | 3 |
placenta | 1.18e-17 | 4 |
allantois | 1.18e-17 | 4 |
extraembryonic structure | 6.56e-15 | 24 |
urothelium | 3.04e-14 | 5 |
orifice | 5.85e-13 | 36 |
oral opening | 1.84e-12 | 22 |
endoderm-derived structure | 2.79e-12 | 160 |
endoderm | 2.79e-12 | 160 |
presumptive endoderm | 2.79e-12 | 160 |
transitional epithelium | 5.79e-12 | 6 |
egg chorion | 2.38e-11 | 3 |
organ component layer | 4.73e-10 | 66 |
urinary system structure | 2.34e-09 | 47 |
epithelium of mucosa | 2.39e-09 | 8 |
gingiva | 2.39e-09 | 8 |
mouth | 2.49e-09 | 29 |
stomodeum | 2.49e-09 | 29 |
surface structure | 3.73e-09 | 99 |
renal system | 3.86e-09 | 48 |
respiratory system | 3.09e-07 | 74 |
Ontology term | p-value | n |
---|---|---|
skin squamous cell carcinoma | 1.16e-08 | 1 |
keratoacanthoma | 1.16e-08 | 1 |