FFCP PHASE1:Mm9::chr4:130348020..130348047,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=20970 | |EntrezGene=20970 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=224 | |||
|TSSclassifier=NA | |||
|UniProt=Q64519,B1ASF5 | |UniProt=Q64519,B1ASF5 | ||
|association_with_transcript=-404bp_to_ENSMUST00000070478,NM_011520,uc008uzr.1_5end | |association_with_transcript=-404bp_to_ENSMUST00000070478,NM_011520,uc008uzr.1_5end | ||
|cluster_id=chr4:130348020..130348047,+ | |||
|description=CAGE_peak_8_at_Sdc3_5end | |description=CAGE_peak_8_at_Sdc3_5end | ||
|id=chr4:130348020..130348047,+ | |id=chr4:130348020..130348047,+ | ||
|ontology_enrichment_celltype=CL:0000117!3.17e-13!23;CL:0000337!3.17e-13!23;CL:0000540!1.88e-11!33;CL:0000047!1.88e-11!33;CL:0000031!1.88e-11!33;CL:0000404!1.88e-11!33;CL:0000393!1.07e-09!39;CL:0000211!1.07e-09!39;CL:0000221!3.41e-08!44;CL:0000133!3.41e-08!44;CL:0002319!1.17e-07!43 | |ontology_enrichment_celltype=CL:0000117!3.17e-13!23;CL:0000337!3.17e-13!23;CL:0000540!1.88e-11!33;CL:0000047!1.88e-11!33;CL:0000031!1.88e-11!33;CL:0000404!1.88e-11!33;CL:0000393!1.07e-09!39;CL:0000211!1.07e-09!39;CL:0000221!3.41e-08!44;CL:0000133!3.41e-08!44;CL:0002319!1.17e-07!43 | ||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.53e-27,23;CL:0000337,1.53e-27,23;CL:0000540,1.72e-18,33;CL:0000047,1.72e-18,33;CL:0000031,1.72e-18,33;CL:0000404,1.72e-18,33;CL:0000393,2.77e-15,39;CL:0000211,2.77e-15,39;CL:0002319,1.21e-13,43;CL:0000221,2.81e-13,44;CL:0000133,2.81e-13,44;CL:0000120,3.14e-13,3;CL:0002613,3.14e-13,3;CL:0002612,1.03e-12,3;CL:0002611,2.90e-09,2;CL:0002321,8.87e-09,70 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!2.75e-12!102;UBERON:0000924!2.75e-12!102;UBERON:0006601!2.75e-12!102;UBERON:0002346!4.04e-11!71;UBERON:0003075!4.04e-11!71;UBERON:0007284!4.04e-11!71;UBERON:0001017!8.84e-11!73;UBERON:0005743!8.84e-11!73;UBERON:0000073!1.48e-10!75;UBERON:0001016!1.48e-10!75;UBERON:0000033!3.57e-08!63;UBERON:0001049!9.53e-08!52;UBERON:0005068!9.53e-08!52;UBERON:0006241!9.53e-08!52;UBERON:0007135!9.53e-08!52 | |ontology_enrichment_uberon=UBERON:0004121!2.75e-12!102;UBERON:0000924!2.75e-12!102;UBERON:0006601!2.75e-12!102;UBERON:0002346!4.04e-11!71;UBERON:0003075!4.04e-11!71;UBERON:0007284!4.04e-11!71;UBERON:0001017!8.84e-11!73;UBERON:0005743!8.84e-11!73;UBERON:0000073!1.48e-10!75;UBERON:0001016!1.48e-10!75;UBERON:0000033!3.57e-08!63;UBERON:0001049!9.53e-08!52;UBERON:0005068!9.53e-08!52;UBERON:0006241!9.53e-08!52;UBERON:0007135!9.53e-08!52 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001948,2.56e-20,5;UBERON:0002315,2.56e-20,5;UBERON:0002240,6.63e-17,6;UBERON:0005174,6.63e-17,6;UBERON:0001137,6.63e-17,6;UBERON:0000369,2.65e-13,5;UBERON:0002435,2.65e-13,5;UBERON:0000204,2.65e-13,5;UBERON:0010082,2.65e-13,5;UBERON:0002257,1.03e-12,3;UBERON:0002020,2.68e-10,34;UBERON:0001017,1.08e-09,73;UBERON:0001016,2.32e-09,75;UBERON:0002256,2.90e-09,2;UBERON:0000073,1.65e-08,54;UBERON:0002420,2.38e-08,8;UBERON:0007245,2.38e-08,8;UBERON:0010009,2.38e-08,8;UBERON:0010011,2.38e-08,8;UBERON:0000454,2.38e-08,8;UBERON:0003076,2.45e-08,12;UBERON:0003057,2.45e-08,12;UBERON:0004121,8.34e-07,95;UBERON:0000924,8.34e-07,95;UBERON:0006601,8.34e-07,95 | |||
|phase1_expression=0.320297694209588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183546752161682,0,0,0,0,0.139986421625363,0,0,0,0,0.257259436035947,0,0,5.26022798234954,10.5798195854407,2.53532561402472,0,0,0,0,0,0,0,0.207379224616955,0.135005938331691,0.210324961351382,4.28476476605705,3.75476519617743,0.489963196859816,0.191690942036473,0,1.10115880999389,0.383062014255563,1.0752457327937,4.87979264601717,8.69132614222892,3.12548022334056,0.558365998002762,0,0.45839474333043,2.65165726926301,3.98640706237488,2.05039390407831,0.075726193333184,0,0,0,0,0,0,0,0,0,0,0,0.704217098883403,1.28326477414318,0,0,0,0,0,0,0,0.29688427812965,0.693941307064543,0.304465478312141,0.461230994512117,0.452167921657868,0.117588707135705,0,0,0,0,0,0,0,0,0.292780797011547,0,0,0,0,0,0.299581278809645,0,1.25654352112864,0.173824320192276,0,0.41557608911912,0.648965052271031,0,0,0,0,0,0.229902104433473,0.360124259610698,0.753524089178575,0.680364991513279,0.12811372028485,0.281105173679186,0,0.215567992932842,0.378212160335639,0.351902248327898,0.219195732427575,0,0,0,0,0,0,0,0,0.469052119962192,0.180062061461015,0,0.196764231747404,0.154267112887378,0,0,0,0,0,0,0,0,0,0.420579897128254,1.44066457330998,0,0,0.639864751605702,0.464473343720877,0.128867461322093,0.201683524623343,0,0.190225626112559,0,0.329397909448022,0.251335208800269,0,0,0,0,0,0.189667900953082,0.114248512609729,0,0,0.193952487167626,0,0,0,0,0,0,0,0,0,0,0.241177159752417,0,0,0.162135226775035,0,0,0,0,0,0,0,0.184753190166605,0.37898282354097,0,0,0,0,0,0,0,0,0.159454768657487,0,0,0,0,0,0,0,0.481651769963376,0.586058432961016,0,0.252470927204373,0,0.390438744296638,0.430846795465598,0.238968797952552,0,0,0.404810701674894,0,0,0.963963949265421,0,0,0.325773918707152,0,0,0.242780636154981,0,0,0,0,0,0,0,0,0,0,0,0.18006109403131,0.129358683782755,0,0.177340233642274,0,0,0.304464949114599,0,0,0,0,0,0.301564624640779,0,0,0,0.556275906031529,0,0.206386867963223,0.185194527369712,0,0,0,0,0,0,0,0,0,0.108005340821801,0,0,0,0.247960367176008,0,0,0,0,0,0,0.388902376688095,0.129159823477731,0,0.352071715937262,0,0.209718688851422,0,0,0,0,0.102710957164827,0,0,0,0,0,0,0,0,0,0,0,0.226730383615211,0,0,0,0,0.187682475451182,0,0,0,0.564751842617067,0,0,0.859265911718438,0,0,0,0.45032120322422,0,0,0.103787347584177,0.399024873401031,1.02440163452481,0.486213434136588,0.209613162627982,1.10306105070008,0.222246727801615,0.618105171716683,0.64183841918363,1.01078884705519,1.52087579934144,0.188626341386076,0.561849044819294,0.576226371643824,0.459483751644906,0.476293691283074,0.463537303779422,0.38581844092741,0,0.441596760403192,0,0.177475806159338,0.476872379894642,0.145346416632329,0.376437521661322,0.592302255241736,0.548783918618318,0.263069711437843,0.814824683075171,0,0.118635018124174,0.492522411877817,0.818462086339379,0,1.35034627686799,2.24829520144151,1.16965804222704,0.429742108096597,0.191288332068843,0,0 | |phase1_expression=0.320297694209588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183546752161682,0,0,0,0,0.139986421625363,0,0,0,0,0.257259436035947,0,0,5.26022798234954,10.5798195854407,2.53532561402472,0,0,0,0,0,0,0,0.207379224616955,0.135005938331691,0.210324961351382,4.28476476605705,3.75476519617743,0.489963196859816,0.191690942036473,0,1.10115880999389,0.383062014255563,1.0752457327937,4.87979264601717,8.69132614222892,3.12548022334056,0.558365998002762,0,0.45839474333043,2.65165726926301,3.98640706237488,2.05039390407831,0.075726193333184,0,0,0,0,0,0,0,0,0,0,0,0.704217098883403,1.28326477414318,0,0,0,0,0,0,0,0.29688427812965,0.693941307064543,0.304465478312141,0.461230994512117,0.452167921657868,0.117588707135705,0,0,0,0,0,0,0,0,0.292780797011547,0,0,0,0,0,0.299581278809645,0,1.25654352112864,0.173824320192276,0,0.41557608911912,0.648965052271031,0,0,0,0,0,0.229902104433473,0.360124259610698,0.753524089178575,0.680364991513279,0.12811372028485,0.281105173679186,0,0.215567992932842,0.378212160335639,0.351902248327898,0.219195732427575,0,0,0,0,0,0,0,0,0.469052119962192,0.180062061461015,0,0.196764231747404,0.154267112887378,0,0,0,0,0,0,0,0,0,0.420579897128254,1.44066457330998,0,0,0.639864751605702,0.464473343720877,0.128867461322093,0.201683524623343,0,0.190225626112559,0,0.329397909448022,0.251335208800269,0,0,0,0,0,0.189667900953082,0.114248512609729,0,0,0.193952487167626,0,0,0,0,0,0,0,0,0,0,0.241177159752417,0,0,0.162135226775035,0,0,0,0,0,0,0,0.184753190166605,0.37898282354097,0,0,0,0,0,0,0,0,0.159454768657487,0,0,0,0,0,0,0,0.481651769963376,0.586058432961016,0,0.252470927204373,0,0.390438744296638,0.430846795465598,0.238968797952552,0,0,0.404810701674894,0,0,0.963963949265421,0,0,0.325773918707152,0,0,0.242780636154981,0,0,0,0,0,0,0,0,0,0,0,0.18006109403131,0.129358683782755,0,0.177340233642274,0,0,0.304464949114599,0,0,0,0,0,0.301564624640779,0,0,0,0.556275906031529,0,0.206386867963223,0.185194527369712,0,0,0,0,0,0,0,0,0,0.108005340821801,0,0,0,0.247960367176008,0,0,0,0,0,0,0.388902376688095,0.129159823477731,0,0.352071715937262,0,0.209718688851422,0,0,0,0,0.102710957164827,0,0,0,0,0,0,0,0,0,0,0,0.226730383615211,0,0,0,0,0.187682475451182,0,0,0,0.564751842617067,0,0,0.859265911718438,0,0,0,0.45032120322422,0,0,0.103787347584177,0.399024873401031,1.02440163452481,0.486213434136588,0.209613162627982,1.10306105070008,0.222246727801615,0.618105171716683,0.64183841918363,1.01078884705519,1.52087579934144,0.188626341386076,0.561849044819294,0.576226371643824,0.459483751644906,0.476293691283074,0.463537303779422,0.38581844092741,0,0.441596760403192,0,0.177475806159338,0.476872379894642,0.145346416632329,0.376437521661322,0.592302255241736,0.548783918618318,0.263069711437843,0.814824683075171,0,0.118635018124174,0.492522411877817,0.818462086339379,0,1.35034627686799,2.24829520144151,1.16965804222704,0.429742108096597,0.191288332068843,0,0 | ||
|short_description=p8@Sdc3 | |short_description=p8@Sdc3 | ||
}} | }} |
Latest revision as of 10:06, 26 September 2015
Short description: | p8@Sdc3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_8_at_Sdc3_5end |
Coexpression cluster: | MCL_coexpression_mm9:224 |
Association with transcript: | -404bp_to_ENSMUST00000070478, NM_011520, uc008uzr.1_5end |
EntrezGene: | Sdc3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.53e-27 | 23 |
neuroblast (sensu Vertebrata) | 1.53e-27 | 23 |
neuron | 1.72e-18 | 33 |
neuronal stem cell | 1.72e-18 | 33 |
neuroblast | 1.72e-18 | 33 |
electrically signaling cell | 1.72e-18 | 33 |
electrically responsive cell | 2.77e-15 | 39 |
electrically active cell | 2.77e-15 | 39 |
neural cell | 1.21e-13 | 43 |
ectodermal cell | 2.81e-13 | 44 |
neurectodermal cell | 2.81e-13 | 44 |
granule cell | 3.14e-13 | 3 |
striatum neuron | 3.14e-13 | 3 |
neuron of the ventral spinal cord | 1.03e-12 | 3 |
neuron of the dorsal spinal cord | 2.90e-09 | 2 |
embryonic cell | 8.87e-09 | 70 |
Ontology term | p-value | n |
---|---|---|
regional part of spinal cord | 2.56e-20 | 5 |
gray matter of spinal cord | 2.56e-20 | 5 |
spinal cord | 6.63e-17 | 6 |
dorsal region element | 6.63e-17 | 6 |
dorsum | 6.63e-17 | 6 |
corpus striatum | 2.65e-13 | 5 |
striatum | 2.65e-13 | 5 |
ventral part of telencephalon | 2.65e-13 | 5 |
future corpus striatum | 2.65e-13 | 5 |
ventral horn of spinal cord | 1.03e-12 | 3 |
gray matter | 2.68e-10 | 34 |
central nervous system | 1.08e-09 | 73 |
nervous system | 2.32e-09 | 75 |
dorsal horn of spinal cord | 2.90e-09 | 2 |
regional part of nervous system | 1.65e-08 | 54 |
basal ganglion | 2.38e-08 | 8 |
nuclear complex of neuraxis | 2.38e-08 | 8 |
aggregate regional part of brain | 2.38e-08 | 8 |
collection of basal ganglia | 2.38e-08 | 8 |
cerebral subcortex | 2.38e-08 | 8 |
posterior neural tube | 2.45e-08 | 12 |
chordal neural plate | 2.45e-08 | 12 |
ectoderm-derived structure | 8.34e-07 | 95 |
ectoderm | 8.34e-07 | 95 |
presumptive ectoderm | 8.34e-07 | 95 |