FF:508-5B2: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023 | |DRA_sample_Accession=CAGE@SAMD00005992 | ||
|accession_numbers=CAGE;DRX009014;DRR009888;DRZ001313;DRZ002696;DRZ012663;DRZ014046 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0002107,UBERON:0002100,UBERON:0000479,UBERON:0001007,UBERON:0004119,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002368,UBERON:0005177,UBERON:0002365,UBERON:0005172,UBERON:0006925,UBERON:0002530,UBERON:0010317,UBERON:0005173,UBERON:0002417,UBERON:0000949,UBERON:0002330,UBERON:0000916,UBERON:0002423 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000101,FF:0000103,FF:0000001,FF:0000998,FF:0000004,FF:0000317,FF:0000318,FF:0011379 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr1:173144144..173144176,+!p1@Nr1i3!2.49!310.98!Nr1i3;;chr10:88969376..88969395,-!p1@Nr1h4!2.32!209.89!Nr1h4;;chr10:80555320..80555378,-!p1@Creb3l3!2.23!193.58!Creb3l3;;chr2:163372884..163372904,+!p1@Hnf4a!2.20!159.20!Hnf4a;;chr1:173144100..173144138,+!p2@Nr1i3!2.15!140.22!Nr1i3;;chr9:74709695..74709722,+!p1@Onecut1!2.11!128.96!Onecut1;;chr5:135582751..135582788,+!p1@Mlxipl!2.10!479.96!Mlxipl;;chr16:38294860..38294924,-!p1@Nr1i2!1.96!90.42!Nr1i2;;chr10:88996295..88996335,-!p3@Nr1h4!1.95!103.46!Nr1h4;;chr7:19608891..19608895,-!p1@Foxa3!1.93!108.21!Foxa3;;chr15:85566537..85566552,+!p2@Ppara!1.81!64.03!Ppara;;chr2:27531961..27531974,+!p7@Rxra!1.75!55.14!Rxra;;chr10:88996336..88996380,-!p2@Nr1h4!1.70!59.59!Nr1h4;;chr18:64499674..64499696,+!p1@Onecut2!1.67!77.37!Onecut2;;chr15:85566184..85566238,+!p1@Ppara!1.66!65.52!Ppara;;chr11:90249521..90249551,-!p3@Hlf!1.58!36.76!Hlf;;chr2:77357622..77357704,-!p1@Zfp385b!1.52!84.19!Zfp385b;;chr11:60023912..60023930,-!p1@Srebf1!1.51!725.42!Srebf1;;chr4:133109285..133109308,+!p1@Nr0b2!1.51!31.42!Nr0b2;;chr6:90415250..90415271,+!p4@Klf15!1.47!28.46!Klf15;;chr2:163372869..163372882,+!p3@Hnf4a!1.47!28.46!Hnf4a;;chr3:94176733..94176794,+!p1@Rorc!1.46!209.30!Rorc;;chr18:64499706..64499721,+!p2@Onecut2!1.46!39.13!Onecut2;;chr7:35904304..35904320,+!p1@Cebpa!1.42!488.85!Cebpa;;chr19:37509324..37509337,+!p1@Hhex!1.41!167.50!Hhex;;chr16:43363190..43363242,+!p2@Zbtb20!1.38!68.48!Zbtb20;;chr9:74714303..74714318,+!p2@Onecut1!1.33!20.16!Onecut1;;chr17:87153519..87153533,+!p5@Epas1!1.32!29.05!Epas1;;chr5:115421065..115421088,-!p1@Hnf1a!1.31!19.27!Hnf1a;;chr2:91034924..91034946,-!p2@Nr1h3!1.30!23.12!Nr1h3;;chr1:191994550..191994623,-!p1@Prox1!1.29!123.92!Prox1;;chr6:108610766..108610781,+!p2@Bhlhe40!1.29!33.20!Bhlhe40;;chr2:147872790..147872821,-!p2@Foxa2!1.27!17.79!Foxa2;;chr2:91035254..91035271,-!p3@Nr1h3!1.25!20.75!Nr1h3;;chr10:88996274..88996286,-!p4@Nr1h4!1.25!16.90!Nr1h4;;chr15:85566241..85566253,+!p6@Ppara!1.25!16.90!Ppara;;chr2:91035197..91035237,-!p1@Nr1h3!1.23!32.91!Nr1h3;;chr2:27532479..27532509,+!p3@Rxra!1.23!32.31!Rxra;;chr6:90415281..90415295,+!p5@Klf15!1.23!16.01!Klf15;;chr12:58646974..58647003,-!p1@Foxa1!1.16!18.08!Foxa1;;chr9:74714281..74714296,+!p5@Onecut1!1.16!13.34!Onecut1;;chr15:81633203..81633215,+!p3@Tef!1.15!20.46!Tef;;chr17:87153505..87153516,+!p6@Epas1!1.13!17.49!Epas1;;chr10:80555299..80555306,-!p3@Creb3l3!1.11!11.86!Creb3l3;;chr10:5734660..5734670,-!p7@Esr1!1.09!11.27!Esr1;;chr7:52960555..52960662,+!p1@Dbp!1.08!95.16!Dbp;;chr15:81633165..81633188,+!p2@Tef!1.08!90.42!Tef;;chr1:138846009..138846038,-!p3@Nr5a2!1.08!12.45!Nr5a2;;chr8:59799772..59799789,+!p1@Hand2!1.07!30.83!Hand2;;chr11:121380640..121380655,-!p1@Zfp750!1.07!18.08!Zfp750;;chr15:85566051..85566080,+!p4@Ppara!1.07!12.75!Ppara;;chr4:32334732..32334739,+!p7@Bach2!1.07!10.67!Bach2;;chr13:37918684..37918701,+!p12@Rreb1!1.06!12.45!Rreb1;;chr10:5734717..5734727,-!p12@Esr1!1.06!10.38!Esr1;;chr14:63864056..63864102,-!p1@Gata4!1.05!17.79!Gata4;;chr6:134780337..134780355,+!p3@Crebl2!1.05!13.34!Crebl2;;chr11:60036258..60036276,-!p3@Srebf1!1.04!17.49!Srebf1;;chr10:5734907..5734920,-!p11@Esr1!1.04!10.08!Esr1;;chr2:173044380..173044432,-!p1@Zbp1!1.03!23.72!Zbp1;;chr11:121380611..121380625,-!p3@Zfp750!1.03!11.86!Zfp750;;chr10:80555285..80555291,-!p4@Creb3l3!1.03!9.78!Creb3l3;;chr7:148452314..148452329,-!p1@Irf7!1.02!66.41!Irf7;;chr16:43363152..43363186,+!p3@Zbtb20!1.00!21.05!Zbtb20;;chr1:138846047..138846074,-!p5@Nr5a2!1.00!9.78!Nr5a2;;chr1:138857048..138857071,-!p2@Nr5a2!1.00!8.89!Nr5a2;;chr1:138857076..138857105,-!p1@Nr5a2!1.00!8.89!Nr5a2;;chr15:85602655..85602680,+!p5@Ppara!1.00!8.89!Ppara;;chr10:5734677..5734702,-!p4@Esr1!1.00!8.89!Esr1;;chr6:90412582..90412601,+!p1@Klf15!0.99!42.39!Klf15;;chr10:5734525..5734569,-!p3@Esr1!0.98!14.23!Esr1;;chr2:147871627..147871641,-!p1@Foxa2!0.97!8.30!Foxa2;;chr2:27532513..27532525,+!p8@Rxra!0.96!9.49!Rxra;;chr1:138845748..138845766,-!p4@Nr5a2!0.95!10.38!Nr5a2;;chr11:121380594..121380609,-!p2@Zfp750!0.93!13.34!Zfp750;;chr1:191993385..191993405,-!p3@Prox1!0.92!7.41!Prox1;;chr16:38294929..38294940,-!p2@Nr1i2!0.92!7.41!Nr1i2;;chr9:48644037..48644067,-!p2@Zbtb16!0.91!18.38!Zbtb16;;chr7:52960700..52960719,+!p2@Dbp!0.91!8.89!Dbp;;chr8:125778192..125778217,+!p2@Zfp276!0.90!20.16!Zfp276;;chr2:27532754..27532815,+!p1@Rxra!0.89!207.22!Rxra;;chr11:90250944..90250982,-!p2@Hlf!0.89!11.56!Hlf;;chr16:43235969..43235989,+!p20@Zbtb20!0.89!6.82!Zbtb20;;chr19:26681226..26681299,+!p7@Smarca2!0.88!16.01!Smarca2;;chr2:148506935..148506954,+!p2@Gzf1!0.88!13.64!Gzf1;;chr16:43247391..43247422,+!p12@Zbtb20!0.88!6.52!Zbtb20;;chr11:90252223..90252240,-!p1@Hlf!0.87!56.92!Hlf;;chr14:18493386..18493464,+!p1@Thrb!0.87!25.79!Thrb;;chr11:100683839..100683890,-!p2@Stat5b!0.86!15.42!Stat5b;;chr2:160192793..160192809,-!p1@Mafb!0.85!96.64!Mafb;;chr8:107793688..107793736,+!p1@Hsf4!0.85!8.00!Hsf4;;chr1:13364477..13364492,-!p6@Ncoa2!0.85!7.71!Ncoa2;;chr14:100683884..100683908,-!p4@Klf12!0.84!11.56!Klf12;;chr1:93309740..93309811,-!p1@Hes6!0.83!124.21!Hes6;;chr7:20408047..20408125,-!p1@Bcl3!0.82!68.48!Bcl3;;chr6:108610513..108610528,+!p3@Bhlhe40!0.82!8.89!Bhlhe40;;chr4:82151500..82151505,-!p11@Nfib!0.82!7.11!Nfib;;chr7:52960663..52960677,+!p6@Dbp!0.82!5.63!Dbp;;chr2:147872720..147872727,-!p9@Foxa2!0.82!5.63!Foxa2;;chr9:69137716..69137744,+!p1@Rora!0.81!37.06!Rora;;chr19:26679654..26679675,+!p1@Smarca2!0.79!52.18!Smarca2;;chr2:167514456..167514473,+!p1@Cebpb!0.78!246.65!Cebpb;;chr17:87153462..87153473,+!p3@Epas1!0.78!20.46!Epas1;;chr2:160698288..160698358,-!p3@Zhx3!0.78!16.60!Zhx3;;chr16:42907676..42907797,+!p1@Zbtb20!0.77!69.67!Zbtb20;;chr10:22539932..22539956,-!p1@Tcf21!0.77!13.93!Tcf21;;chr8:107793737..107793757,+!p2@Hsf4!0.77!5.63!Hsf4;;chr6:108610610..108610676,+!p1@Bhlhe40!0.76!256.14!Bhlhe40;;chr18:3281034..3281104,-!p1@Crem!0.76!37.06!Crem;;chr15:81633139..81633152,+!p4@Tef!0.76!8.30!Tef;;chr15:85565338..85565355,+!p7@Ppara!0.76!4.74!Ppara;;chr10:80555398..80555409,-!p2@Creb3l3!0.76!4.74!Creb3l3;;chr12:36219283..36219298,-!p2@Ahr!0.76!4.74!Ahr;;chr1:138846079..138846103,-!p6@Nr5a2!0.76!4.74!Nr5a2;;chr5:77524250..77524300,-!p1@Hopx!0.75!103.17!Hopx;;chr10:82226649..82226694,-!p2@Nfyb!0.75!32.31!Nfyb;;chr6:134780234..134780288,+!p1@Crebl2!0.75!16.30!Crebl2;;chr6:72185232..72185272,-!p1@Atoh8!0.75!14.23!Atoh8;;chr16:43363837..43363842,+!p11@Zbtb20!0.75!9.19!Zbtb20;;chr16:44173384..44173407,+!p2@Gm608!0.74!12.75!Gm608;;chr15:75799634..75799645,+!p4@Zfp707!0.74!5.34!Zfp707;;chr14:18493480..18493494,+!p2@Thrb!0.74!5.04!Thrb;;chr14:19071466..19071550,-!p1@Nr1d2!0.73!33.50!Nr1d2;;chr12:36219645..36219730,-!p1@Ahr!0.72!46.54!Ahr;;chr10:127707602..127707633,+!p1@Stat2!0.72!41.80!Stat2;;chr11:98636531..98636559,-!p1@Nr1d1!0.72!26.98!Nr1d1;;chr3:95238432..95238455,+!p2@Arnt!0.71!26.98!Arnt;;chr2:133377954..133377973,+!p1@Bmp2!0.71!14.53!Bmp2;;chr10:88145766..88145770,-!p1@Spic!0.71!5.63!Spic;;chr11:83664365..83664383,+!p1@Hnf1b!0.71!4.15!Hnf1b;;chr14:76887526..76887555,+!p10@Tsc22d1!0.71!4.15!Tsc22d1;;chr2:75543161..75543173,-!p5@Nfe2l2!0.71!4.15!Nfe2l2;;chr9:24578720..24578735,-!p1@Tbx20!0.71!4.15!Tbx20;;chr9:74709682..74709691,+!p3@Onecut1!0.71!4.15!Onecut1;;chr6:90412608..90412630,+!p2@Klf15!0.70!8.89!Klf15;;chr10:80889867..80889924,-!p1@Nfic!0.69!126.29!Nfic;;chr13:31650185..31650201,+!p1@Foxq1!0.69!15.12!Foxq1;;chr1:169548377..169548430,+!p1@Rxrg!0.69!3.85!Rxrg;;chr10:5734582..5734595,-!p10@Esr1!0.69!3.85!Esr1;;chr3:102768047..102768060,-!p1@Nr1h5!0.69!3.85!Nr1h5;;chr11:5420954..5420969,+!p2@Xbp1!0.68!54.55!Xbp1;;chr4:6917921..6917970,-!p2@Tox!0.68!11.56!Tox;;chr1:133904946..133904974,+!p7@Elk4!0.68!6.23!Elk4;;chr18:36441119..36441158,+!p2@Pura!0.66!9.78!Pura;;chr5:31262699..31262712,-!p2@Preb!0.66!6.23!Preb;;chr6:90416275..90416286,+!p9@Klf15!0.66!3.56!Klf15;;chr6:72185396..72185413,-!p6@Atoh8!0.66!3.56!Atoh8;;chr19:37511111..37511115,+!p2@Hhex!0.66!3.56!Hhex;;chr8:91568074..91568094,-!p1@Sall1!0.66!3.56!Sall1;;chr10:5734473..5734489,-!p5@Esr1!0.66!3.56!Esr1;;chr1:52176315..52176343,+!p1@Stat1!0.65!58.10!Stat1;;chr3:89197216..89197258,-!p3@Zbtb7b!0.65!8.00!Zbtb7b;;chr11:53164556..53164567,+!p5@Aff4!0.65!5.93!Aff4;;chr4:97444471..97444514,+!p1@Nfia!0.64!106.13!Nfia;;chr2:166888058..166888105,-!p2@Znfx1!0.64!12.15!Znfx1;;chr7:52960730..52960762,+!p3@Dbp!0.64!4.45!Dbp;;chr10:67599319..67599360,-!p2@Arid5b!0.63!42.39!Arid5b;;chr9:96619823..96619898,-!p2@Zbtb38!0.63!16.90!Zbtb38;;chr9:69137672..69137702,+!p2@Rora!0.63!16.01!Rora;;chr11:5420655..5420659,+!p3@Xbp1!0.63!3.26!Xbp1;;chr15:81641878..81641921,+!p1@Tef!0.62!98.13!Tef;;chr2:27532817..27532828,+!p6@Rxra!0.62!5.34!Rxra;;chr6:144157924..144157955,-!p2@Sox5!0.62!4.15!Sox5;;chr15:81633224..81633235,+!p5@Tef!0.62!4.15!Tef;;chr9:30838206..30838285,+!p2@Zbtb44!0.61!47.43!Zbtb44;;chr19:26679615..26679646,+!p3@Smarca2!0.61!25.49!Smarca2;;chr6:72185210..72185228,-!p3@Atoh8!0.61!5.63!Atoh8;;chr2:128769696..128769712,-!p2@Zc3h8!0.60!10.97!Zc3h8;;chr5:3647720..3647733,-!p3@Gatad1!0.60!6.23!Gatad1;;chr6:39068163..39068176,-!p2@Parp12!0.60!6.23!Parp12;;chr2:38206580..38206600,+!p2@Lhx2!0.60!3.85!Lhx2;;chr11:106128936..106128955,-!p4@Smarcd2!0.60!3.56!Smarcd2;;chr4:89354729..89354776,+!p1@Dmrta1!0.60!2.96!Dmrta1;;chr1:181733737..181733755,-!p2@Ahctf1!0.59!10.67!Ahctf1;;chr6:72849280..72849297,-!p6@Kcmf1!0.59!6.23!Kcmf1;;chr9:48644429..48644462,-!p3@Zbtb16!0.59!6.23!Zbtb16;;chr18:3337503..3337536,-!p7@Crem!0.59!5.63!Crem;;chr14:52640373..52640412,-!p1@Zfp219!0.58!19.86!Zfp219;;chr6:29476690..29476724,+!p1@Irf5!0.58!15.42!Irf5;;chr10:67599375..67599386,-!p3@Arid5b!0.58!5.63!Arid5b;;chr10:67599432..67599444,-!p4@Arid5b!0.58!5.04!Arid5b;;chr10:80809447..80809515,-!p5@Hmg20b!0.58!3.56!Hmg20b;;chr1:172797892..172797915,-!p1@Atf6!0.57!93.98!Atf6;;chr11:96690797..96690813,-!p1@Nfe2l1!0.57!64.33!Nfe2l1;;chr15:75799598..75799619,+!p3@Zfp707!0.57!6.52!Zfp707;;chrX:137135036..137135064,-!p4@Tsc22d3!0.57!5.93!Tsc22d3;;chr12:25780945..25780961,-!p1@Id2!0.56!555.85!Id2;;chr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| |expression_enrichment_score=chr1:173144144..173144176,+!p1@Nr1i3!2.49!310.98!Nr1i3;;chr10:88969376..88969395,-!p1@Nr1h4!2.32!209.89!Nr1h4;;chr10:80555320..80555378,-!p1@Creb3l3!2.23!193.58!Creb3l3;;chr2:163372884..163372904,+!p1@Hnf4a!2.20!159.20!Hnf4a;;chr1:173144100..173144138,+!p2@Nr1i3!2.15!140.22!Nr1i3;;chr9:74709695..74709722,+!p1@Onecut1!2.11!128.96!Onecut1;;chr5:135582751..135582788,+!p1@Mlxipl!2.10!479.96!Mlxipl;;chr16:38294860..38294924,-!p1@Nr1i2!1.96!90.42!Nr1i2;;chr10:88996295..88996335,-!p3@Nr1h4!1.95!103.46!Nr1h4;;chr7:19608891..19608895,-!p1@Foxa3!1.93!108.21!Foxa3;;chr15:85566537..85566552,+!p2@Ppara!1.81!64.03!Ppara;;chr2:27531961..27531974,+!p7@Rxra!1.75!55.14!Rxra;;chr10:88996336..88996380,-!p2@Nr1h4!1.70!59.59!Nr1h4;;chr18:64499674..64499696,+!p1@Onecut2!1.67!77.37!Onecut2;;chr15:85566184..85566238,+!p1@Ppara!1.66!65.52!Ppara;;chr11:90249521..90249551,-!p3@Hlf!1.58!36.76!Hlf;;chr2:77357622..77357704,-!p1@Zfp385b!1.52!84.19!Zfp385b;;chr11:60023912..60023930,-!p1@Srebf1!1.51!725.42!Srebf1;;chr4:133109285..133109308,+!p1@Nr0b2!1.51!31.42!Nr0b2;;chr6:90415250..90415271,+!p4@Klf15!1.47!28.46!Klf15;;chr2:163372869..163372882,+!p3@Hnf4a!1.47!28.46!Hnf4a;;chr3:94176733..94176794,+!p1@Rorc!1.46!209.30!Rorc;;chr18:64499706..64499721,+!p2@Onecut2!1.46!39.13!Onecut2;;chr7:35904304..35904320,+!p1@Cebpa!1.42!488.85!Cebpa;;chr19:37509324..37509337,+!p1@Hhex!1.41!167.50!Hhex;;chr16:43363190..43363242,+!p2@Zbtb20!1.38!68.48!Zbtb20;;chr9:74714303..74714318,+!p2@Onecut1!1.33!20.16!Onecut1;;chr17:87153519..87153533,+!p5@Epas1!1.32!29.05!Epas1;;chr5:115421065..115421088,-!p1@Hnf1a!1.31!19.27!Hnf1a;;chr2:91034924..91034946,-!p2@Nr1h3!1.30!23.12!Nr1h3;;chr1:191994550..191994623,-!p1@Prox1!1.29!123.92!Prox1;;chr6:108610766..108610781,+!p2@Bhlhe40!1.29!33.20!Bhlhe40;;chr2:147872790..147872821,-!p2@Foxa2!1.27!17.79!Foxa2;;chr2:91035254..91035271,-!p3@Nr1h3!1.25!20.75!Nr1h3;;chr10:88996274..88996286,-!p4@Nr1h4!1.25!16.90!Nr1h4;;chr15:85566241..85566253,+!p6@Ppara!1.25!16.90!Ppara;;chr2:91035197..91035237,-!p1@Nr1h3!1.23!32.91!Nr1h3;;chr2:27532479..27532509,+!p3@Rxra!1.23!32.31!Rxra;;chr6:90415281..90415295,+!p5@Klf15!1.23!16.01!Klf15;;chr12:58646974..58647003,-!p1@Foxa1!1.16!18.08!Foxa1;;chr9:74714281..74714296,+!p5@Onecut1!1.16!13.34!Onecut1;;chr15:81633203..81633215,+!p3@Tef!1.15!20.46!Tef;;chr17:87153505..87153516,+!p6@Epas1!1.13!17.49!Epas1;;chr10:80555299..80555306,-!p3@Creb3l3!1.11!11.86!Creb3l3;;chr10:5734660..5734670,-!p7@Esr1!1.09!11.27!Esr1;;chr7:52960555..52960662,+!p1@Dbp!1.08!95.16!Dbp;;chr15:81633165..81633188,+!p2@Tef!1.08!90.42!Tef;;chr1:138846009..138846038,-!p3@Nr5a2!1.08!12.45!Nr5a2;;chr8:59799772..59799789,+!p1@Hand2!1.07!30.83!Hand2;;chr11:121380640..121380655,-!p1@Zfp750!1.07!18.08!Zfp750;;chr15:85566051..85566080,+!p4@Ppara!1.07!12.75!Ppara;;chr4:32334732..32334739,+!p7@Bach2!1.07!10.67!Bach2;;chr13:37918684..37918701,+!p12@Rreb1!1.06!12.45!Rreb1;;chr10:5734717..5734727,-!p12@Esr1!1.06!10.38!Esr1;;chr14:63864056..63864102,-!p1@Gata4!1.05!17.79!Gata4;;chr6:134780337..134780355,+!p3@Crebl2!1.05!13.34!Crebl2;;chr11:60036258..60036276,-!p3@Srebf1!1.04!17.49!Srebf1;;chr10:5734907..5734920,-!p11@Esr1!1.04!10.08!Esr1;;chr2:173044380..173044432,-!p1@Zbp1!1.03!23.72!Zbp1;;chr11:121380611..121380625,-!p3@Zfp750!1.03!11.86!Zfp750;;chr10:80555285..80555291,-!p4@Creb3l3!1.03!9.78!Creb3l3;;chr7:148452314..148452329,-!p1@Irf7!1.02!66.41!Irf7;;chr16:43363152..43363186,+!p3@Zbtb20!1.00!21.05!Zbtb20;;chr1:138846047..138846074,-!p5@Nr5a2!1.00!9.78!Nr5a2;;chr1:138857048..138857071,-!p2@Nr5a2!1.00!8.89!Nr5a2;;chr1:138857076..138857105,-!p1@Nr5a2!1.00!8.89!Nr5a2;;chr15:85602655..85602680,+!p5@Ppara!1.00!8.89!Ppara;;chr10:5734677..5734702,-!p4@Esr1!1.00!8.89!Esr1;;chr6:90412582..90412601,+!p1@Klf15!0.99!42.39!Klf15;;chr10:5734525..5734569,-!p3@Esr1!0.98!14.23!Esr1;;chr2:147871627..147871641,-!p1@Foxa2!0.97!8.30!Foxa2;;chr2:27532513..27532525,+!p8@Rxra!0.96!9.49!Rxra;;chr1:138845748..138845766,-!p4@Nr5a2!0.95!10.38!Nr5a2;;chr11:121380594..121380609,-!p2@Zfp750!0.93!13.34!Zfp750;;chr1:191993385..191993405,-!p3@Prox1!0.92!7.41!Prox1;;chr16:38294929..38294940,-!p2@Nr1i2!0.92!7.41!Nr1i2;;chr9:48644037..48644067,-!p2@Zbtb16!0.91!18.38!Zbtb16;;chr7:52960700..52960719,+!p2@Dbp!0.91!8.89!Dbp;;chr8:125778192..125778217,+!p2@Zfp276!0.90!20.16!Zfp276;;chr2:27532754..27532815,+!p1@Rxra!0.89!207.22!Rxra;;chr11:90250944..90250982,-!p2@Hlf!0.89!11.56!Hlf;;chr16:43235969..43235989,+!p20@Zbtb20!0.89!6.82!Zbtb20;;chr19:26681226..26681299,+!p7@Smarca2!0.88!16.01!Smarca2;;chr2:148506935..148506954,+!p2@Gzf1!0.88!13.64!Gzf1;;chr16:43247391..43247422,+!p12@Zbtb20!0.88!6.52!Zbtb20;;chr11:90252223..90252240,-!p1@Hlf!0.87!56.92!Hlf;;chr14:18493386..18493464,+!p1@Thrb!0.87!25.79!Thrb;;chr11:100683839..100683890,-!p2@Stat5b!0.86!15.42!Stat5b;;chr2:160192793..160192809,-!p1@Mafb!0.85!96.64!Mafb;;chr8:107793688..107793736,+!p1@Hsf4!0.85!8.00!Hsf4;;chr1:13364477..13364492,-!p6@Ncoa2!0.85!7.71!Ncoa2;;chr14:100683884..100683908,-!p4@Klf12!0.84!11.56!Klf12;;chr1:93309740..93309811,-!p1@Hes6!0.83!124.21!Hes6;;chr7:20408047..20408125,-!p1@Bcl3!0.82!68.48!Bcl3;;chr6:108610513..108610528,+!p3@Bhlhe40!0.82!8.89!Bhlhe40;;chr4:82151500..82151505,-!p11@Nfib!0.82!7.11!Nfib;;chr7:52960663..52960677,+!p6@Dbp!0.82!5.63!Dbp;;chr2:147872720..147872727,-!p9@Foxa2!0.82!5.63!Foxa2;;chr9:69137716..69137744,+!p1@Rora!0.81!37.06!Rora;;chr19:26679654..26679675,+!p1@Smarca2!0.79!52.18!Smarca2;;chr2:167514456..167514473,+!p1@Cebpb!0.78!246.65!Cebpb;;chr17:87153462..87153473,+!p3@Epas1!0.78!20.46!Epas1;;chr2:160698288..160698358,-!p3@Zhx3!0.78!16.60!Zhx3;;chr16:42907676..42907797,+!p1@Zbtb20!0.77!69.67!Zbtb20;;chr10:22539932..22539956,-!p1@Tcf21!0.77!13.93!Tcf21;;chr8:107793737..107793757,+!p2@Hsf4!0.77!5.63!Hsf4;;chr6:108610610..108610676,+!p1@Bhlhe40!0.76!256.14!Bhlhe40;;chr18:3281034..3281104,-!p1@Crem!0.76!37.06!Crem;;chr15:81633139..81633152,+!p4@Tef!0.76!8.30!Tef;;chr15:85565338..85565355,+!p7@Ppara!0.76!4.74!Ppara;;chr10:80555398..80555409,-!p2@Creb3l3!0.76!4.74!Creb3l3;;chr12:36219283..36219298,-!p2@Ahr!0.76!4.74!Ahr;;chr1:138846079..138846103,-!p6@Nr5a2!0.76!4.74!Nr5a2;;chr5:77524250..77524300,-!p1@Hopx!0.75!103.17!Hopx;;chr10:82226649..82226694,-!p2@Nfyb!0.75!32.31!Nfyb;;chr6:134780234..134780288,+!p1@Crebl2!0.75!16.30!Crebl2;;chr6:72185232..72185272,-!p1@Atoh8!0.75!14.23!Atoh8;;chr16:43363837..43363842,+!p11@Zbtb20!0.75!9.19!Zbtb20;;chr16:44173384..44173407,+!p2@Gm608!0.74!12.75!Gm608;;chr15:75799634..75799645,+!p4@Zfp707!0.74!5.34!Zfp707;;chr14:18493480..18493494,+!p2@Thrb!0.74!5.04!Thrb;;chr14:19071466..19071550,-!p1@Nr1d2!0.73!33.50!Nr1d2;;chr12:36219645..36219730,-!p1@Ahr!0.72!46.54!Ahr;;chr10:127707602..127707633,+!p1@Stat2!0.72!41.80!Stat2;;chr11:98636531..98636559,-!p1@Nr1d1!0.72!26.98!Nr1d1;;chr3:95238432..95238455,+!p2@Arnt!0.71!26.98!Arnt;;chr2:133377954..133377973,+!p1@Bmp2!0.71!14.53!Bmp2;;chr10:88145766..88145770,-!p1@Spic!0.71!5.63!Spic;;chr11:83664365..83664383,+!p1@Hnf1b!0.71!4.15!Hnf1b;;chr14:76887526..76887555,+!p10@Tsc22d1!0.71!4.15!Tsc22d1;;chr2:75543161..75543173,-!p5@Nfe2l2!0.71!4.15!Nfe2l2;;chr9:24578720..24578735,-!p1@Tbx20!0.71!4.15!Tbx20;;chr9:74709682..74709691,+!p3@Onecut1!0.71!4.15!Onecut1;;chr6:90412608..90412630,+!p2@Klf15!0.70!8.89!Klf15;;chr10:80889867..80889924,-!p1@Nfic!0.69!126.29!Nfic;;chr13:31650185..31650201,+!p1@Foxq1!0.69!15.12!Foxq1;;chr1:169548377..169548430,+!p1@Rxrg!0.69!3.85!Rxrg;;chr10:5734582..5734595,-!p10@Esr1!0.69!3.85!Esr1;;chr3:102768047..102768060,-!p1@Nr1h5!0.69!3.85!Nr1h5;;chr11:5420954..5420969,+!p2@Xbp1!0.68!54.55!Xbp1;;chr4:6917921..6917970,-!p2@Tox!0.68!11.56!Tox;;chr1:133904946..133904974,+!p7@Elk4!0.68!6.23!Elk4;;chr18:36441119..36441158,+!p2@Pura!0.66!9.78!Pura;;chr5:31262699..31262712,-!p2@Preb!0.66!6.23!Preb;;chr6:90416275..90416286,+!p9@Klf15!0.66!3.56!Klf15;;chr6:72185396..72185413,-!p6@Atoh8!0.66!3.56!Atoh8;;chr19:37511111..37511115,+!p2@Hhex!0.66!3.56!Hhex;;chr8:91568074..91568094,-!p1@Sall1!0.66!3.56!Sall1;;chr10:5734473..5734489,-!p5@Esr1!0.66!3.56!Esr1;;chr1:52176315..52176343,+!p1@Stat1!0.65!58.10!Stat1;;chr3:89197216..89197258,-!p3@Zbtb7b!0.65!8.00!Zbtb7b;;chr11:53164556..53164567,+!p5@Aff4!0.65!5.93!Aff4;;chr4:97444471..97444514,+!p1@Nfia!0.64!106.13!Nfia;;chr2:166888058..166888105,-!p2@Znfx1!0.64!12.15!Znfx1;;chr7:52960730..52960762,+!p3@Dbp!0.64!4.45!Dbp;;chr10:67599319..67599360,-!p2@Arid5b!0.63!42.39!Arid5b;;chr9:96619823..96619898,-!p2@Zbtb38!0.63!16.90!Zbtb38;;chr9:69137672..69137702,+!p2@Rora!0.63!16.01!Rora;;chr11:5420655..5420659,+!p3@Xbp1!0.63!3.26!Xbp1;;chr15:81641878..81641921,+!p1@Tef!0.62!98.13!Tef;;chr2:27532817..27532828,+!p6@Rxra!0.62!5.34!Rxra;;chr6:144157924..144157955,-!p2@Sox5!0.62!4.15!Sox5;;chr15:81633224..81633235,+!p5@Tef!0.62!4.15!Tef;;chr9:30838206..30838285,+!p2@Zbtb44!0.61!47.43!Zbtb44;;chr19:26679615..26679646,+!p3@Smarca2!0.61!25.49!Smarca2;;chr6:72185210..72185228,-!p3@Atoh8!0.61!5.63!Atoh8;;chr2:128769696..128769712,-!p2@Zc3h8!0.60!10.97!Zc3h8;;chr5:3647720..3647733,-!p3@Gatad1!0.60!6.23!Gatad1;;chr6:39068163..39068176,-!p2@Parp12!0.60!6.23!Parp12;;chr2:38206580..38206600,+!p2@Lhx2!0.60!3.85!Lhx2;;chr11:106128936..106128955,-!p4@Smarcd2!0.60!3.56!Smarcd2;;chr4:89354729..89354776,+!p1@Dmrta1!0.60!2.96!Dmrta1;;chr1:181733737..181733755,-!p2@Ahctf1!0.59!10.67!Ahctf1;;chr6:72849280..72849297,-!p6@Kcmf1!0.59!6.23!Kcmf1;;chr9:48644429..48644462,-!p3@Zbtb16!0.59!6.23!Zbtb16;;chr18:3337503..3337536,-!p7@Crem!0.59!5.63!Crem;;chr14:52640373..52640412,-!p1@Zfp219!0.58!19.86!Zfp219;;chr6:29476690..29476724,+!p1@Irf5!0.58!15.42!Irf5;;chr10:67599375..67599386,-!p3@Arid5b!0.58!5.63!Arid5b;;chr10:67599432..67599444,-!p4@Arid5b!0.58!5.04!Arid5b;;chr10:80809447..80809515,-!p5@Hmg20b!0.58!3.56!Hmg20b;;chr1:172797892..172797915,-!p1@Atf6!0.57!93.98!Atf6;;chr11:96690797..96690813,-!p1@Nfe2l1!0.57!64.33!Nfe2l1;;chr15:75799598..75799619,+!p3@Zfp707!0.57!6.52!Zfp707;;chrX:137135036..137135064,-!p4@Tsc22d3!0.57!5.93!Tsc22d3;;chr12:25780945..25780961,-!p1@Id2!0.56!555.85!Id2;;chr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| ||
|ffid_belonging_in_development=UBERON:0001041,UBERON:0002532,UBERON:0006595,UBERON:0003104,UBERON:0004161,UBERON:0009497,UBERON:0010316 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
Line 36: | Line 42: | ||
|has_quality= | |has_quality= | ||
|id=FF:508-5B2 | |id=FF:508-5B2 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0011379 | ||
|is_obsolete= | |||
|library_id=CNhs10466 | |||
|library_id_phase_based=2:CNhs10466 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;508 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;508 | |||
|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/liver%252c%2520adult%2520pregnant%2520day01.CNhs10466.508-5B2.mm10.nobarcode.bam | |||
|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/liver%252c%2520adult%2520pregnant%2520day01.CNhs10466.508-5B2.mm10.nobarcode.ctss.bed.gz | |||
|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/liver%252c%2520adult%2520pregnant%2520day01.CNhs10466.508-5B2.mm9.nobarcode.bam | |||
|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/liver%252c%2520adult%2520pregnant%2520day01.CNhs10466.508-5B2.mm9.ctss.bed.gz | |||
|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/liver%252c%2520adult%2520pregnant%2520day01.CNhs10466.508-5B2.mm9.nobarcode.rdna.fa.gz | |||
|name=liver, adult pregnant day01 | |name=liver, adult pregnant day01 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10466,LSID646,release008,COMPLETED | |profile_hcage=CNhs10466,LSID646,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|repeat_enrich_byfamily=0.349721594514973,0,0,0,0,0,-0.207830316497265,0,0,0,0,-0.0843392403965415,0,0,0,0,0,0,-0.0791366987864798,0,0,0,0.112756652096095,0,0,0,0,0,0,0,0,0,0.317908100036523,0,0,0,0,0,0.0615785016523929,-0.115749428035017,-0.186877323257251,-0.984211366477826,-0.269868638010351,0,0,0,0,0,0,0,0,0,0,0,0,-0.0660055475634404,0,0,0,0,0,0,0,0,0,0,-0.0457773098867939,-0.10846071255708,-0.158091042771083,-0.0395927108761397,0,0,-0.10343131100754,-0.00190676497102649,0,0,-0.0434361684210983,-0.00539467377392505,0.48213381338889,0.0339250572561873,0,0,0,0,0,0,0.208913634996184,0.149059397265617,0.226716556558657,0,0,0,0,0 | |||
|rna_box=5 | |rna_box=5 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
Line 57: | Line 76: | ||
|rna_weight_ug= | |rna_weight_ug= | ||
|sample_age= | |sample_age= | ||
|sample_category=developmental | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
Line 76: | Line 96: | ||
|sample_tissue=liver | |sample_tissue=liver | ||
|top_motifs=NFIL3:3.98244564927;FOX{F1,F2,J1}:3.64949768589;FOXA2:3.18278117291;HNF1A:2.94894347739;RXR{A,B,G}_{NR1H2,PPAR}dimers:2.86443779447;NR1H4:2.79886754577;NFIX:2.74486162568;bHLH_family:2.69077046206;HLF:2.39627393411;CEBPA,B_DDIT3:2.28431649043;HNF4A_NR2F1,2:2.26709608673;ONECUT1,2:2.22238501355;STAT2,4,6:2.09657009494;FOX{D1,D2}:1.98283249832;FOXQ1:1.98219516538;ARID5B:1.96580963179;RBPJ:1.87053458876;AR:1.80185904953;NKX2-2,8:1.79920938556;NR6A1:1.59633916363;NR5A1,2:1.13661240585;STAT5{A,B}:1.13102791546;FOXM1:1.13041091713;GZF1:1.11109163362;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.04631940863;RORA:0.934634666173;TP53:0.885319652993;RXRA_VDR{dimer}:0.866301814355;IRF1,2:0.818228725671;RXR{A,B,G}:0.711744378261;NKX3-2:0.667067138958;CUX2:0.656169201428;ALX4:0.61743399848;STAT1,3:0.60439883638;IRF7:0.575226822178;NR3C1:0.551329175607;GCM1,2:0.546187248605;MYOD1:0.53304497163;ATF6:0.519221261992;FOXD3:0.510819389157;PAX1,9:0.440852153685;ESRRA:0.428468822814;NFE2:0.411738671346;FOXN1:0.394694837933;HAND1,2:0.391609076035;YY1:0.38906717451;VSX1,2:0.345222145469;TLX2:0.279318367217;LHX3,4:0.232129598531;T:0.227308621405;CDX1,2,4:0.212437866025;BPTF:0.203415364768;LEF1_TCF7_TCF7L1,2:0.180949463492;NFE2L1:0.173530538606;SNAI1..3:0.154812101107;TLX1..3_NFIC{dimer}:0.145787083699;ELK1,4_GABP{A,B1}:0.116348195906;TFAP4:0.0772835592672;ZEB1:0.0527099610249;MTF1:0.0442336585987;SP1:0.0412111805304;GATA6:0.00518410709066;PBX1:-0.033376101754;ZBTB6:-0.0337462449986;ELF1,2,4:-0.0407553356369;PDX1:-0.0745948732041;PAX8:-0.0755488846514;DMAP1_NCOR{1,2}_SMARC:-0.0926411386288;POU3F1..4:-0.121345196711;HOX{A4,D4}:-0.149782319667;ADNP_IRX_SIX_ZHX:-0.18292211108;PAX5:-0.191658648711;SPI1:-0.257235837829;BACH2:-0.257807102151;FOX{I1,J2}:-0.276405153678;CREB1:-0.285984555591;DBP:-0.293929018186;TBP:-0.29990792375;IKZF1:-0.326822879368;NFKB1_REL_RELA:-0.347308590956;ATF5_CREB3:-0.34736507552;ETS1,2:-0.360577598363;NHLH1,2:-0.366829539702;HMGA1,2:-0.366906582027;SOX5:-0.369758532536;NFE2L2:-0.37784060878;NKX2-3_NKX2-5:-0.386445080112;HIF1A:-0.394611859667;MYBL2:-0.396618657769;EBF1:-0.40346068505;SREBF1,2:-0.408054904463;MYFfamily:-0.422264235279;TEF:-0.432307725519;PITX1..3:-0.434264454436;FOXP1:-0.468717467678;SPIB:-0.490852320182;REST:-0.494133745026;NFY{A,B,C}:-0.526054847033;RUNX1..3:-0.56863403555;AHR_ARNT_ARNT2:-0.569247860652;NRF1:-0.598424897108;ZNF143:-0.604780963847;TEAD1:-0.620318376754;UFEwm:-0.635220121672;PAX2:-0.664524759602;SPZ1:-0.675998475352;GFI1B:-0.690363336596;EN1,2:-0.701197259132;MYB:-0.708632975898;TGIF1:-0.736418937206;MEF2{A,B,C,D}:-0.745452201616;TFCP2:-0.761186239035;EVI1:-0.763993304774;HIC1:-0.770007585213;GTF2A1,2:-0.772347003862;ESR1:-0.780599778672;PAX4:-0.803962091329;ZNF423:-0.814969067207;PRRX1,2:-0.821818348157;FOXO1,3,4:-0.83645165599;HOXA9_MEIS1:-0.851855996202;ZNF238:-0.852454740317;LMO2:-0.874468690202;PATZ1:-0.883579593318;MAFB:-0.888547330239;ZFP161:-0.891488379336;POU6F1:-0.911081069991;GTF2I:-0.918746366427;FOS_FOS{B,L1}_JUN{B,D}:-0.95078780866;MED-1{core}:-0.978929695319;HOX{A5,B5}:-1.00416299956;ATF4:-1.01737437856;OCT4_SOX2{dimer}:-1.02700695613;EGR1..3:-1.03119842463;TFAP2{A,C}:-1.03644590989;SMAD1..7,9:-1.03851736049;XCPE1{core}:-1.0800947856;SRF:-1.08293104943;RFX1:-1.10058336983;ZBTB16:-1.10449015552;TFAP2B:-1.13496432472;AIRE:-1.15184994368;ALX1:-1.15707711394;PPARG:-1.15876573994;TAL1_TCF{3,4,12}:-1.1894748139;IKZF2:-1.19584418266;MAZ:-1.20782825816;KLF4:-1.2166215442;MTE{core}:-1.22987121817;NFATC1..3:-1.23463734805;ZIC1..3:-1.25545099909;FOSL2:-1.26517146494;GATA4:-1.33716184442;PRDM1:-1.35623774301;PAX6:-1.36433316077;NKX2-1,4:-1.37085296264;JUN:-1.38548961998;SOX17:-1.39444055524;MZF1:-1.40952258617;E2F1..5:-1.45053750801;GFI1:-1.46044047043;HSF1,2:-1.49073220759;HMX1:-1.53158775469;RFX2..5_RFXANK_RFXAP:-1.54909726844;NANOG{mouse}:-1.56254579129;NANOG:-1.56667986271;BREu{core}:-1.57711917265;POU1F1:-1.58500330175;ATF2:-1.59702444388;TOPORS:-1.60337428376;GLI1..3:-1.7012809983;SOX{8,9,10}:-1.78182214965;CRX:-1.80097959485;SOX2:-1.82261326509;FOXL1:-1.82673087277;RREB1:-1.83355533457;TBX4,5:-1.93440832151;POU2F1..3:-1.93820207913;TFDP1:-2.04468244169;FOXP3:-2.06757837142;HES1:-2.08105931443;CDC5L:-2.15556695284;NKX3-1:-2.24810538133;HBP1_HMGB_SSRP1_UBTF:-2.3172573692;ZNF148:-2.33864818334;EP300:-2.38825414448;NKX6-1,2:-2.42497798185;POU5F1:-2.5847767962;ZNF384:-2.85982330737 | |top_motifs=NFIL3:3.98244564927;FOX{F1,F2,J1}:3.64949768589;FOXA2:3.18278117291;HNF1A:2.94894347739;RXR{A,B,G}_{NR1H2,PPAR}dimers:2.86443779447;NR1H4:2.79886754577;NFIX:2.74486162568;bHLH_family:2.69077046206;HLF:2.39627393411;CEBPA,B_DDIT3:2.28431649043;HNF4A_NR2F1,2:2.26709608673;ONECUT1,2:2.22238501355;STAT2,4,6:2.09657009494;FOX{D1,D2}:1.98283249832;FOXQ1:1.98219516538;ARID5B:1.96580963179;RBPJ:1.87053458876;AR:1.80185904953;NKX2-2,8:1.79920938556;NR6A1:1.59633916363;NR5A1,2:1.13661240585;STAT5{A,B}:1.13102791546;FOXM1:1.13041091713;GZF1:1.11109163362;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.04631940863;RORA:0.934634666173;TP53:0.885319652993;RXRA_VDR{dimer}:0.866301814355;IRF1,2:0.818228725671;RXR{A,B,G}:0.711744378261;NKX3-2:0.667067138958;CUX2:0.656169201428;ALX4:0.61743399848;STAT1,3:0.60439883638;IRF7:0.575226822178;NR3C1:0.551329175607;GCM1,2:0.546187248605;MYOD1:0.53304497163;ATF6:0.519221261992;FOXD3:0.510819389157;PAX1,9:0.440852153685;ESRRA:0.428468822814;NFE2:0.411738671346;FOXN1:0.394694837933;HAND1,2:0.391609076035;YY1:0.38906717451;VSX1,2:0.345222145469;TLX2:0.279318367217;LHX3,4:0.232129598531;T:0.227308621405;CDX1,2,4:0.212437866025;BPTF:0.203415364768;LEF1_TCF7_TCF7L1,2:0.180949463492;NFE2L1:0.173530538606;SNAI1..3:0.154812101107;TLX1..3_NFIC{dimer}:0.145787083699;ELK1,4_GABP{A,B1}:0.116348195906;TFAP4:0.0772835592672;ZEB1:0.0527099610249;MTF1:0.0442336585987;SP1:0.0412111805304;GATA6:0.00518410709066;PBX1:-0.033376101754;ZBTB6:-0.0337462449986;ELF1,2,4:-0.0407553356369;PDX1:-0.0745948732041;PAX8:-0.0755488846514;DMAP1_NCOR{1,2}_SMARC:-0.0926411386288;POU3F1..4:-0.121345196711;HOX{A4,D4}:-0.149782319667;ADNP_IRX_SIX_ZHX:-0.18292211108;PAX5:-0.191658648711;SPI1:-0.257235837829;BACH2:-0.257807102151;FOX{I1,J2}:-0.276405153678;CREB1:-0.285984555591;DBP:-0.293929018186;TBP:-0.29990792375;IKZF1:-0.326822879368;NFKB1_REL_RELA:-0.347308590956;ATF5_CREB3:-0.34736507552;ETS1,2:-0.360577598363;NHLH1,2:-0.366829539702;HMGA1,2:-0.366906582027;SOX5:-0.369758532536;NFE2L2:-0.37784060878;NKX2-3_NKX2-5:-0.386445080112;HIF1A:-0.394611859667;MYBL2:-0.396618657769;EBF1:-0.40346068505;SREBF1,2:-0.408054904463;MYFfamily:-0.422264235279;TEF:-0.432307725519;PITX1..3:-0.434264454436;FOXP1:-0.468717467678;SPIB:-0.490852320182;REST:-0.494133745026;NFY{A,B,C}:-0.526054847033;RUNX1..3:-0.56863403555;AHR_ARNT_ARNT2:-0.569247860652;NRF1:-0.598424897108;ZNF143:-0.604780963847;TEAD1:-0.620318376754;UFEwm:-0.635220121672;PAX2:-0.664524759602;SPZ1:-0.675998475352;GFI1B:-0.690363336596;EN1,2:-0.701197259132;MYB:-0.708632975898;TGIF1:-0.736418937206;MEF2{A,B,C,D}:-0.745452201616;TFCP2:-0.761186239035;EVI1:-0.763993304774;HIC1:-0.770007585213;GTF2A1,2:-0.772347003862;ESR1:-0.780599778672;PAX4:-0.803962091329;ZNF423:-0.814969067207;PRRX1,2:-0.821818348157;FOXO1,3,4:-0.83645165599;HOXA9_MEIS1:-0.851855996202;ZNF238:-0.852454740317;LMO2:-0.874468690202;PATZ1:-0.883579593318;MAFB:-0.888547330239;ZFP161:-0.891488379336;POU6F1:-0.911081069991;GTF2I:-0.918746366427;FOS_FOS{B,L1}_JUN{B,D}:-0.95078780866;MED-1{core}:-0.978929695319;HOX{A5,B5}:-1.00416299956;ATF4:-1.01737437856;OCT4_SOX2{dimer}:-1.02700695613;EGR1..3:-1.03119842463;TFAP2{A,C}:-1.03644590989;SMAD1..7,9:-1.03851736049;XCPE1{core}:-1.0800947856;SRF:-1.08293104943;RFX1:-1.10058336983;ZBTB16:-1.10449015552;TFAP2B:-1.13496432472;AIRE:-1.15184994368;ALX1:-1.15707711394;PPARG:-1.15876573994;TAL1_TCF{3,4,12}:-1.1894748139;IKZF2:-1.19584418266;MAZ:-1.20782825816;KLF4:-1.2166215442;MTE{core}:-1.22987121817;NFATC1..3:-1.23463734805;ZIC1..3:-1.25545099909;FOSL2:-1.26517146494;GATA4:-1.33716184442;PRDM1:-1.35623774301;PAX6:-1.36433316077;NKX2-1,4:-1.37085296264;JUN:-1.38548961998;SOX17:-1.39444055524;MZF1:-1.40952258617;E2F1..5:-1.45053750801;GFI1:-1.46044047043;HSF1,2:-1.49073220759;HMX1:-1.53158775469;RFX2..5_RFXANK_RFXAP:-1.54909726844;NANOG{mouse}:-1.56254579129;NANOG:-1.56667986271;BREu{core}:-1.57711917265;POU1F1:-1.58500330175;ATF2:-1.59702444388;TOPORS:-1.60337428376;GLI1..3:-1.7012809983;SOX{8,9,10}:-1.78182214965;CRX:-1.80097959485;SOX2:-1.82261326509;FOXL1:-1.82673087277;RREB1:-1.83355533457;TBX4,5:-1.93440832151;POU2F1..3:-1.93820207913;TFDP1:-2.04468244169;FOXP3:-2.06757837142;HES1:-2.08105931443;CDC5L:-2.15556695284;NKX3-1:-2.24810538133;HBP1_HMGB_SSRP1_UBTF:-2.3172573692;ZNF148:-2.33864818334;EP300:-2.38825414448;NKX6-1,2:-2.42497798185;POU5F1:-2.5847767962;ZNF384:-2.85982330737 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:508-5B2;search_select_hide=table117:508-5B2 | |||
}} | }} |
Latest revision as of 19:18, 4 June 2020
Name: | liver, adult pregnant day01 |
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Species: | Mouse (Mus musculus) |
Library ID: | CNhs10466 |
Sample type: | developmental |
Genomic View: | UCSC |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
CNhs10466
0 | 0 |
1 | 0 |
10 | 0 |
100 | 0 |
1000 | 0.0773 |
1001 | 0.03 |
1002 | -0.116 |
1003 | 0.112 |
1004 | 0 |
1005 | 0 |
1006 | -0.143 |
1007 | -0.228 |
1008 | 0 |
1009 | 0.00269 |
101 | 0.0309 |
1010 | 0 |
1011 | -0.224 |
1012 | 0 |
1013 | 0.466 |
1014 | -0.0874 |
1015 | -0.382 |
1016 | -0.318 |
1017 | 0 |
1018 | 0 |
1019 | 0 |
102 | 0 |
1020 | 0 |
1021 | 0 |
1022 | 0.736 |
1023 | 0 |
1024 | 0 |
1025 | 0.437 |
1026 | 0 |
1027 | -0.048 |
1028 | 0 |
1029 | -0.0989 |
103 | -0.0848 |
1030 | 0 |
1031 | -0.417 |
1032 | -0.397 |
1033 | 0.0463 |
1034 | 0.816 |
1035 | 0 |
1036 | -0.183 |
1037 | 0 |
1038 | -0.14 |
1039 | 0.803 |
104 | 0 |
1040 | -0.19 |
1041 | 0 |
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10466
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10466
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.0869 |
10 | 10 | 0.213 |
100 | 100 | 0.498 |
101 | 101 | 0.642 |
102 | 102 | 0.216 |
103 | 103 | 0.0127 |
104 | 104 | 0.807 |
105 | 105 | 0.646 |
106 | 106 | 0.0966 |
107 | 107 | 0.156 |
108 | 108 | 0.741 |
109 | 109 | 0.0295 |
11 | 11 | 0.0472 |
110 | 110 | 0.0732 |
111 | 111 | 0.0338 |
112 | 112 | 0.0155 |
113 | 113 | 0.996 |
114 | 114 | 0.00434 |
115 | 115 | 0.365 |
116 | 116 | 0.843 |
117 | 117 | 0.0722 |
118 | 118 | 0.435 |
119 | 119 | 0.0606 |
12 | 12 | 0.478 |
120 | 120 | 0.696 |
121 | 121 | 0.517 |
122 | 122 | 0.358 |
123 | 123 | 0.418 |
124 | 124 | 0.484 |
125 | 125 | 0.339 |
126 | 126 | 0.261 |
127 | 127 | 0.774 |
128 | 128 | 0.0349 |
129 | 129 | 0.652 |
13 | 13 | 9.49059e-5 |
130 | 130 | 0.74 |
131 | 131 | 0.475 |
132 | 132 | 0.498 |
133 | 133 | 0.743 |
134 | 134 | 0.718 |
135 | 135 | 0.369 |
136 | 136 | 0.441 |
137 | 137 | 0.802 |
138 | 138 | 0.499 |
139 | 139 | 0.341 |
14 | 14 | 0.461 |
140 | 140 | 0.0487 |
141 | 141 | 0.532 |
142 | 142 | 0.265 |
143 | 143 | 0.869 |
144 | 144 | 0.491 |
145 | 145 | 0.0639 |
146 | 146 | 0.42 |
147 | 147 | 0.408 |
148 | 148 | 0.661 |
149 | 149 | 0.0909 |
15 | 15 | 0.138 |
150 | 150 | 0.218 |
151 | 151 | 0.445 |
152 | 152 | 0.0648 |
153 | 153 | 0.423 |
154 | 154 | 0.958 |
155 | 155 | 0.439 |
156 | 156 | 0.101 |
157 | 157 | 0.745 |
158 | 158 | 0.567 |
159 | 159 | 0.375 |
160 | 160 | 0.336 |
161 | 161 | 0.88 |
162 | 162 | 0.615 |
163 | 163 | 0.211 |
164 | 164 | 0.0336 |
165 | 165 | 0.566 |
166 | 166 | 0.276 |
167 | 167 | 0.264 |
168 | 168 | 0.952 |
169 | 169 | 0.00228 |
17 | 17 | 0.0635 |
18 | 18 | 0.871 |
19 | 19 | 0.0473 |
2 | 2 | 0.736 |
20 | 20 | 0.522 |
21 | 21 | 0.573 |
22 | 22 | 0.123 |
23 | 23 | 0.256 |
24 | 24 | 0.148 |
25 | 25 | 0.554 |
26 | 26 | 0.00637 |
27 | 27 | 0.698 |
28 | 28 | 0.462 |
29 | 29 | 0.197 |
3 | 3 | 0.0638 |
30 | 30 | 0.777 |
31 | 31 | 0.405 |
32 | 32 | 0.178 |
33 | 33 | 0.313 |
34 | 34 | 0.854 |
35 | 35 | 0.46 |
36 | 36 | 0.0718 |
37 | 37 | 0.0652 |
38 | 38 | 0.254 |
39 | 39 | 0.317 |
4 | 4 | 0.934 |
40 | 40 | 0.103 |
41 | 41 | 0.933 |
42 | 42 | 0.358 |
43 | 43 | 0.0808 |
44 | 44 | 0.0591 |
45 | 45 | 0.652 |
46 | 46 | 0.155 |
47 | 47 | 0.328 |
48 | 48 | 0.102 |
49 | 49 | 0.0417 |
5 | 5 | 0.184 |
50 | 50 | 0.666 |
51 | 51 | 0.308 |
52 | 52 | 0.452 |
53 | 53 | 0.671 |
54 | 54 | 0.331 |
55 | 55 | 0.659 |
56 | 56 | 0.457 |
57 | 57 | 0.902 |
58 | 58 | 0.243 |
59 | 59 | 0.316 |
6 | 6 | 0.786 |
60 | 60 | 0.146 |
61 | 61 | 0.169 |
62 | 62 | 0.0729 |
63 | 63 | 0.0842 |
64 | 64 | 0.432 |
65 | 65 | 0.158 |
66 | 66 | 0.514 |
67 | 67 | 0.93 |
68 | 68 | 0.184 |
69 | 69 | 0.899 |
7 | 7 | 0.194 |
70 | 70 | 0.0152 |
71 | 71 | 0.0443 |
72 | 72 | 0.65 |
73 | 73 | 0.0484 |
74 | 74 | 0.591 |
75 | 75 | 0.0173 |
76 | 76 | 0.871 |
77 | 77 | 0.416 |
78 | 78 | 0.0295 |
79 | 79 | 0.947 |
8 | 8 | 0.00709 |
80 | 80 | 0.543 |
81 | 81 | 0.559 |
82 | 82 | 0.0201 |
83 | 83 | 0.306 |
84 | 84 | 0.274 |
85 | 85 | 0.0449 |
86 | 86 | 0.0893 |
87 | 87 | 0.135 |
88 | 88 | 0.826 |
89 | 89 | 0.0544 |
9 | 9 | 0.774 |
90 | 90 | 0.149 |
91 | 91 | 0.652 |
92 | 92 | 0.25 |
93 | 93 | 0.115 |
94 | 94 | 0.822 |
95 | 95 | 0.205 |
96 | 96 | 0.308 |
97 | 97 | 0.232 |
98 | 98 | 0.334 |
99 | 99 | 0.0826 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10466
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0011379 mouse liver- adult pregnant day01 sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0002107 (liver)
0002100 (trunk)
0000479 (tissue)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002368 (endocrine gland)
0005177 (trunk region element)
0002365 (exocrine gland)
0005172 (abdomen element)
0006925 (digestive gland)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0005173 (abdominal segment element)
0002417 (abdominal segment of trunk)
0000949 (endocrine system)
0002330 (exocrine system)
0000916 (abdomen)
0002423 (hepatobiliary system)
FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0000317 (mouse pregnant tissue sample)
0000318 (mouse pregnant day 1 sample)
0011379 (mouse liver- adult pregnant day01 sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0001041 (foregut)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0003104 (mesenchyme)
UBERON:0004161 (septum transversum)
UBERON:0009497 (epithelium of foregut-midgut junction)
UBERON:0010316 (germ layer / neural crest)