FF:1345-25G2: Difference between revisions

Latest revision as of 18:59, 4 June 2020

Name:	liver, neonate N03
Species:	Mouse (Mus musculus)
Library ID:	CNhs11123
Sample type:	developmental
Genomic View:	UCSC
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	C57BL/6J
tissue	liver
dev stage	3 days neonate
sex	mixture
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	NA
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	NA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004696

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11123		CAGE		DRX009023		DRR009897

Accession ID Mm9

Library id		BAM		CTSS
CNhs11123		DRZ001322		DRZ002705

Accession ID Mm10

Library id		BAM		CTSS
CNhs11123		DRZ012672		DRZ014055

Download raw sequence, BAM & CTSS

Mm9

Fasta	BAM	CTSS
download	download	donwload

Mm10

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

CNhs11123

0	0
1	0
10	0
100	0
1000	0
1001	0.105
1002	0.00541
1003	0.0184
1004	0
1005	0.105
1006	-0.0097
1007	-0.11
1008	0
1009	-0.0946
101	0.0438
1010	0
1011	-0.147
1012	0
1013	0.26
1014	0.0203
1015	-0.156
1016	-0.272
1017	0
1018	0
1019	0
102	0
1020	0
1021	0.0362
1022	0.137
1023	0
1024	0.116
1025	0.322
1026	0
1027	0
1028	0
1029	0.199
103	-0.0138
1030	0.105
1031	-0.251
1032	-0.232
1033	0
1034	0.66
1035	0
1036	0.202
1037	0
1038	-0.244
1039	0.405
104	0
1040	-0.333
1041	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11123

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0362
MA0003.1	MA0003.1	0.415
MA0004.1	MA0004.1	0.7
MA0006.1	MA0006.1	0.299
MA0007.1	MA0007.1	0.662
MA0009.1	MA0009.1	0.276
MA0014.1	MA0014.1	0.341
MA0017.1	MA0017.1	4.96926e-16
MA0018.2	MA0018.2	1.18045e-5
MA0019.1	MA0019.1	0.301
MA0024.1	MA0024.1	0.71
MA0025.1	MA0025.1	0.68
MA0027.1	MA0027.1	0.999
MA0028.1	MA0028.1	0.661
MA0029.1	MA0029.1	0.0957
MA0030.1	MA0030.1	0.285
MA0031.1	MA0031.1	0.358
MA0035.2	MA0035.2	1.29992e-6
MA0038.1	MA0038.1	0.188
MA0039.2	MA0039.2	0.584
MA0040.1	MA0040.1	0.482
MA0041.1	MA0041.1	0.312
MA0042.1	MA0042.1	0.67
MA0043.1	MA0043.1	0.0176
MA0046.1	MA0046.1	3.96894e-56
MA0047.2	MA0047.2	3.96348e-5
MA0048.1	MA0048.1	0.208
MA0050.1	MA0050.1	0.0595
MA0051.1	MA0051.1	0.192
MA0052.1	MA0052.1	0.00372
MA0055.1	MA0055.1	0.368
MA0057.1	MA0057.1	0.662
MA0058.1	MA0058.1	0.603
MA0059.1	MA0059.1	0.0897
MA0060.1	MA0060.1	0.0815
MA0061.1	MA0061.1	0.216
MA0062.2	MA0062.2	0.891
MA0065.2	MA0065.2	2.24468e-9
MA0066.1	MA0066.1	0.0156
MA0067.1	MA0067.1	0.0986
MA0068.1	MA0068.1	0.708
MA0069.1	MA0069.1	0.168
MA0070.1	MA0070.1	0.78
MA0071.1	MA0071.1	0.00169
MA0072.1	MA0072.1	0.00184
MA0073.1	MA0073.1	0.737
MA0074.1	MA0074.1	0.297
MA0076.1	MA0076.1	0.796
MA0077.1	MA0077.1	0.0319
MA0078.1	MA0078.1	0.754
MA0079.2	MA0079.2	0.145
MA0080.2	MA0080.2	0.208
MA0081.1	MA0081.1	0.957
MA0083.1	MA0083.1	0.132
MA0084.1	MA0084.1	0.171
MA0087.1	MA0087.1	0.0502
MA0088.1	MA0088.1	0.31
MA0090.1	MA0090.1	0.956
MA0091.1	MA0091.1	0.455
MA0092.1	MA0092.1	0.105
MA0093.1	MA0093.1	0.736
MA0099.2	MA0099.2	0.61
MA0100.1	MA0100.1	0.897
MA0101.1	MA0101.1	0.793
MA0102.2	MA0102.2	0.317
MA0103.1	MA0103.1	0.294
MA0104.2	MA0104.2	0.759
MA0105.1	MA0105.1	9.60218e-4
MA0106.1	MA0106.1	0.0834
MA0107.1	MA0107.1	0.93
MA0108.2	MA0108.2	0.165
MA0111.1	MA0111.1	0.966
MA0112.2	MA0112.2	4.60811e-6
MA0113.1	MA0113.1	0.39
MA0114.1	MA0114.1	1.34213e-14
MA0115.1	MA0115.1	4.77723e-10
MA0116.1	MA0116.1	0.00791
MA0117.1	MA0117.1	0.986
MA0119.1	MA0119.1	0.00628
MA0122.1	MA0122.1	0.329
MA0124.1	MA0124.1	0.643
MA0125.1	MA0125.1	0.893
MA0131.1	MA0131.1	0.898
MA0135.1	MA0135.1	0.157
MA0136.1	MA0136.1	0.853
MA0137.2	MA0137.2	0.48
MA0138.2	MA0138.2	0.712
MA0139.1	MA0139.1	0.0734
MA0140.1	MA0140.1	7.39085e-13
MA0141.1	MA0141.1	2.55471e-5
MA0142.1	MA0142.1	0.32
MA0143.1	MA0143.1	0.127
MA0144.1	MA0144.1	0.569
MA0145.1	MA0145.1	0.317
MA0146.1	MA0146.1	0.251
MA0147.1	MA0147.1	0.625
MA0148.1	MA0148.1	2.097e-7
MA0149.1	MA0149.1	0.0343
MA0150.1	MA0150.1	0.0401
MA0152.1	MA0152.1	0.864
MA0153.1	MA0153.1	6.80349e-43
MA0154.1	MA0154.1	0.0185
MA0155.1	MA0155.1	0.526
MA0156.1	MA0156.1	0.894
MA0157.1	MA0157.1	0.313
MA0159.1	MA0159.1	0.00283
MA0160.1	MA0160.1	0.00359
MA0162.1	MA0162.1	0.351
MA0163.1	MA0163.1	2.40476e-5
MA0164.1	MA0164.1	0.714
MA0258.1	MA0258.1	0.00506
MA0259.1	MA0259.1	0.864

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11123

Novel motif	Logo	P-value
1	1	0.0727
10	10	0.111
100	100	0.54
101	101	0.985
102	102	0.216
103	103	0.00503
104	104	0.732
105	105	0.935
106	106	0.0549
107	107	0.0418
108	108	0.554
109	109	0.0229
11	11	0.0722
110	110	0.0588
111	111	0.0232
112	112	0.00535
113	113	0.813
114	114	0.0586
115	115	0.924
116	116	0.677
117	117	0.0209
118	118	0.177
119	119	0.0919
12	12	0.716
120	120	0.563
121	121	0.766
122	122	0.633
123	123	0.234
124	124	0.287
125	125	0.828
126	126	0.136
127	127	0.581
128	128	0.0381
129	129	0.38
13	13	6.43339e-4
130	130	0.667
131	131	0.42
132	132	0.867
133	133	0.158
134	134	0.392
135	135	0.529
136	136	0.605
137	137	0.46
138	138	0.393
139	139	0.469
14	14	0.705
140	140	0.0279
141	141	0.787
142	142	0.182
143	143	0.459
144	144	0.853
145	145	0.0308
146	146	0.352
147	147	0.587
148	148	0.661
149	149	0.728
15	15	0.118
150	150	0.176
151	151	0.452
152	152	0.216
153	153	0.276
154	154	0.657
155	155	0.528
156	156	0.113
157	157	0.826
158	158	0.867
159	159	0.992
160	160	0.138
161	161	0.833
162	162	0.643
163	163	0.478
164	164	0.0362
165	165	0.339
166	166	0.674
167	167	0.108
168	168	0.56
169	169	0.00171
17	17	0.0716
18	18	0.458
19	19	0.0392
2	2	0.995
20	20	0.426
21	21	0.992
22	22	0.222
23	23	0.425
24	24	0.237
25	25	0.737
26	26	1.00678e-4
27	27	0.713
28	28	0.503
29	29	0.077
3	3	0.0221
30	30	0.992
31	31	0.38
32	32	0.154
33	33	0.259
34	34	0.899
35	35	0.588
36	36	0.0216
37	37	0.0742
38	38	0.383
39	39	0.305
4	4	0.599
40	40	0.161
41	41	0.776
42	42	0.16
43	43	0.0725
44	44	0.0793
45	45	0.855
46	46	0.0646
47	47	0.209
48	48	0.148
49	49	0.0605
5	5	0.13
50	50	0.571
51	51	0.344
52	52	0.372
53	53	0.867
54	54	0.338
55	55	0.542
56	56	0.344
57	57	0.447
58	58	0.372
59	59	0.214
6	6	0.885
60	60	0.155
61	61	0.228
62	62	0.119
63	63	0.124
64	64	0.444
65	65	0.247
66	66	0.889
67	67	0.496
68	68	0.183
69	69	0.577
7	7	0.131
70	70	0.167
71	71	0.0259
72	72	0.627
73	73	0.145
74	74	0.599
75	75	0.047
76	76	0.755
77	77	0.441
78	78	0.0213
79	79	0.934
8	8	0.00754
80	80	0.263
81	81	0.664
82	82	0.0972
83	83	0.867
84	84	0.866
85	85	0.107
86	86	0.261
87	87	0.76
88	88	0.845
89	89	0.191
9	9	0.594
90	90	0.0785
91	91	0.146
92	92	0.157
93	93	0.324
94	94	0.693
95	95	0.175
96	96	0.13
97	97	0.644
98	98	0.239
99	99	0.118

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11123

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011484 mouse liver- neonate N03 sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0002107 (liver)
0002100 (trunk)
0000479 (tissue)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002368 (endocrine gland)
0005177 (trunk region element)
0002365 (exocrine gland)
0005172 (abdomen element)
0006925 (digestive gland)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0005173 (abdominal segment element)
0002417 (abdominal segment of trunk)
0000949 (endocrine system)
0002330 (exocrine system)
0000916 (abdomen)
0002423 (hepatobiliary system)

FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000004 (tissue sample)
0000303 (neonate sample - mouse)
0000311 (mouse neonate N3 sample)
0011484 (mouse liver- neonate N03 sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0001041 (foregut)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0003104 (mesenchyme)
UBERON:0004161 (septum transversum)
UBERON:0009497 (epithelium of foregut-midgut junction)
UBERON:0010316 (germ layer / neural crest)
FF:0000294 (mouse embryonic day 11 sample)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002107,UBERON:0002100,UBERON:0000483,UBERON:0002530,UBERON:0000926,UBERON:0000479,UBERON:0001007,UBERON:0000077,UBERON:0002368,UBERON:0000466,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0004120,UBERON:0000025,UBERON:0004119,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0003914,UBERON:0007499,UBERON:0002050,UBERON:0005911,UBERON:0004921,UBERON:0005423,UBERON:0000477,UBERON:0000481,UBERON:0000467,UBERON:0001062,UBERON:0000119,UBERON:0000490,UBERON:0009569,UBERON:0005291,UBERON:0009854,UBERON:0003929,UBERON:0005177,UBERON:0002365,UBERON:0003104,UBERON:0005057,UBERON:0005172,UBERON:0006925,UBERON:0005256,UBERON:0001048,UBERON:0000925,UBERON:0006598,UBERON:0009497,UBERON:0004185,UBERON:0005173,UBERON:0000015,UBERON:0009856,UBERON:0002532,UBERON:0001555,UBERON:0002417,UBERON:0007026,UBERON:0001041,UBERON:0000949,UBERON:0002330,UBERON:0000916,UBERON:0002405,UBERON:0002423,UBERON:0009142,UBERON:0006235,UBERON:0006595,UBERON:0006603,UBERON:0008835,UBERON:0003894,UBERON:0004161,UBERON:0008836
+|DRA_sample_Accession=CAGE@SAMD00004696
+|accession_numbers=CAGE;DRX009023;DRR009897;DRZ001322;DRZ002705;DRZ012672;DRZ014055
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002107,UBERON:0002100,UBERON:0000479,UBERON:0001007,UBERON:0004119,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002368,UBERON:0005177,UBERON:0002365,UBERON:0005172,UBERON:0006925,UBERON:0002530,UBERON:0010317,UBERON:0005173,UBERON:0002417,UBERON:0000949,UBERON:0002330,UBERON:0000916,UBERON:0002423
 |ancestors_in_cell_lineage_facet=
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000101,FF:0000103,FF:0000001,FF:0000004,FF:0000303,FF:0000311,FF:0011484
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr10:80555320..80555378,-!p1@Creb3l3!2.02!118.34!Creb3l3;;chr1:173144144..173144176,+!p1@Nr1i3!1.90!78.52!Nr1i3;;chr7:19608891..19608895,-!p1@Foxa3!1.82!83.47!Foxa3;;chr8:87425854..87425891,+!p1@Klf1!1.77!58.48!Klf1;;chr1:173144100..173144138,+!p2@Nr1i3!1.70!49.42!Nr1i3;;chr16:38294860..38294924,-!p1@Nr1i2!1.69!47.77!Nr1i2;;chr2:163372884..163372904,+!p1@Hnf4a!1.68!47.22!Hnf4a;;chr2:28477452..28477483,-!p1@Gfi1b!1.65!53.26!Gfi1b;;chr10:88969376..88969395,-!p1@Nr1h4!1.64!43.11!Nr1h4;;chr9:74709695..74709722,+!p1@Onecut1!1.61!40.09!Onecut1;;chrX:7544943..7545001,-!p1@Gata1!1.59!37.61!Gata1;;chr15:103085660..103085681,-!p1@Nfe2!1.57!53.81!Nfe2;;chr10:88996336..88996380,-!p2@Nr1h4!1.52!39.26!Nr1h4;;chr7:122989594..122989626,-!p1@Sox6!1.49!29.65!Sox6;;chr7:122989632..122989668,-!p2@Sox6!1.47!28.83!Sox6;;chr4:133109285..133109308,+!p1@Nr0b2!1.45!27.18!Nr0b2;;chr5:135582751..135582788,+!p1@Mlxipl!1.43!101.86!Mlxipl;;chr10:88996295..88996335,-!p3@Nr1h4!1.43!30.48!Nr1h4;;chr15:85566184..85566238,+!p1@Ppara!1.39!34.87!Ppara;;chr15:85566537..85566552,+!p2@Ppara!1.34!20.87!Ppara;;chr15:85602655..85602680,+!p5@Ppara!1.31!19.22!Ppara;;chr7:52071956..52071978,-!p1@Atf5!1.30!597.72!Atf5;;chr4:114732112..114732158,+!p1@Tal1!1.29!40.09!Tal1;;chr11:90249521..90249551,-!p3@Hlf!1.28!17.85!Hlf;;chr15:103082088..103082136,-!p2@Nfe2!1.24!16.20!Nfe2;;chr11:11584970..11585030,+!p2@Ikzf1!1.19!20.87!Ikzf1;;chr4:32334732..32334739,+!p7@Bach2!1.19!14.55!Bach2;;chr19:37509324..37509337,+!p1@Hhex!1.14!90.88!Hhex;;chr14:63864056..63864102,-!p1@Gata4!1.14!21.96!Gata4;;chr9:96159147..96159204,+!p2@Tfdp2!1.11!22.24!Tfdp2;;chr15:103164702..103164778,-!p3@Zfp385a!1.11!14.00!Zfp385a;;chr18:64499674..64499696,+!p1@Onecut2!1.10!20.04!Onecut2;;chr10:88145766..88145770,-!p1@Spic!1.10!15.10!Spic;;chr2:147872790..147872821,-!p2@Foxa2!1.03!9.61!Foxa2;;chr13:31650185..31650201,+!p1@Foxq1!0.99!31.03!Foxq1;;chr18:64499706..64499721,+!p2@Onecut2!0.99!12.63!Onecut2;;chr15:103085690..103085710,-!p3@Nfe2!0.94!8.51!Nfe2;;chr11:121380640..121380655,-!p1@Zfp750!0.92!12.36!Zfp750;;chr2:91034924..91034946,-!p2@Nr1h3!0.92!9.06!Nr1h3;;chr10:80555398..80555409,-!p2@Creb3l3!0.92!7.41!Creb3l3;;chr1:191993385..191993405,-!p3@Prox1!0.92!7.41!Prox1;;chr4:87452200..87452229,-!p2@Mllt3!0.91!15.65!Mllt3;;chr4:114729957..114730012,+!p3@Tal1!0.91!7.14!Tal1;;chr2:163372869..163372882,+!p3@Hnf4a!0.90!6.86!Hnf4a;;chr2:77357622..77357704,-!p1@Zfp385b!0.89!18.94!Zfp385b;;chr6:90415281..90415295,+!p5@Klf15!0.88!6.59!Klf15;;chr7:35904304..35904320,+!p1@Cebpa!0.86!133.99!Cebpa;;chr10:22539932..22539956,-!p1@Tcf21!0.86!17.30!Tcf21;;chr4:87452180..87452196,-!p3@Mllt3!0.86!12.63!Mllt3;;chr5:115421065..115421088,-!p1@Hnf1a!0.86!6.31!Hnf1a;;chr14:100683884..100683908,-!p4@Klf12!0.85!11.81!Klf12;;chr10:79884592..79884621,-!p5@Tcf3!0.85!6.04!Tcf3;;chr1:191994550..191994623,-!p1@Prox1!0.84!43.93!Prox1;;chr4:135728581..135728668,+!p1@E2f2!0.82!28.55!E2f2;;chr2:91035254..91035271,-!p3@Nr1h3!0.81!6.86!Nr1h3;;chr4:135728473..135728494,+!p5@E2f2!0.81!5.49!E2f2;;chr8:87225670..87225697,+!p2@Lyl1!0.79!15.92!Lyl1;;chr7:51787434..51787448,-!p1@Spib!0.79!7.69!Spib;;chr9:96159116..96159130,+!p6@Tfdp2!0.79!6.59!Tfdp2;;chr11:83664365..83664383,+!p1@Hnf1b!0.79!5.22!Hnf1b;;chr8:59799772..59799789,+!p1@Hand2!0.78!15.38!Hand2;;chr2:173044380..173044432,-!p1@Zbp1!0.78!12.90!Zbp1;;chr4:135728181..135728203,+!p2@E2f2!0.78!6.86!E2f2;;chr9:51021788..51021802,+!p1@Pou2af1!0.78!6.04!Pou2af1;;chr10:80555285..80555291,-!p4@Creb3l3!0.77!4.94!Creb3l3;;chr2:147871627..147871641,-!p1@Foxa2!0.77!4.94!Foxa2;;chr2:91035197..91035237,-!p1@Nr1h3!0.76!10.43!Nr1h3;;chr17:87153519..87153533,+!p5@Epas1!0.75!7.14!Epas1;;chr1:138857076..138857105,-!p1@Nr5a2!0.75!4.67!Nr5a2;;chr10:5734677..5734702,-!p4@Esr1!0.75!4.67!Esr1;;chr11:16908650..16908690,-!p1@Plek!0.73!29.93!Plek;;chr9:96159225..96159249,+!p5@Tfdp2!0.73!4.94!Tfdp2;;chr15:85602581..85602598,+!p8@Ppara!0.73!4.39!Ppara;;chr1:138857048..138857071,-!p2@Nr5a2!0.73!4.39!Nr5a2;;chr3:94176733..94176794,+!p1@Rorc!0.72!36.79!Rorc;;chr15:103085802..103085817,-!p4@Nfe2!0.72!5.49!Nfe2;;chr8:87225702..87225726,+!p3@Lyl1!0.71!9.06!Lyl1;;chr6:90415250..90415271,+!p4@Klf15!0.71!4.12!Klf15;;chr2:27532479..27532509,+!p3@Rxra!0.69!8.79!Rxra;;chr16:92826249..92826325,-!p1@Runx1!0.67!9.88!Runx1;;chr15:85566051..85566080,+!p4@Ppara!0.67!4.39!Ppara;;chr9:69137716..69137744,+!p1@Rora!0.66!25.53!Rora;;chr1:38721792..38721845,-!p1@Aff3!0.66!4.67!Aff3;;chr15:85566241..85566253,+!p6@Ppara!0.66!3.57!Ppara;;chr10:80555299..80555306,-!p3@Creb3l3!0.66!3.57!Creb3l3;;chr11:11586218..11586285,+!p1@Ikzf1!0.65!12.63!Ikzf1;;chr8:87643578..87643593,-!p1@Zfp791!0.65!7.96!Zfp791;;chr12:58646974..58647003,-!p1@Foxa1!0.65!4.94!Foxa1;;chr14:100683912..100683947,-!p2@Klf12!0.64!11.81!Klf12;;chr6:16848347..16848391,-!p1@Tfec!0.64!4.67!Tfec;;chr5:65203599..65203617,+!p8@Klf3!0.63!5.77!Klf3;;chr8:91568074..91568094,-!p1@Sall1!0.63!3.29!Sall1;;chr16:38294929..38294940,-!p2@Nr1i2!0.63!3.29!Nr1i2;;chr8:124806048..124806094,+!p1@Zfpm1!0.62!34.87!Zfpm1;;chr2:90936978..90937023,+!p3@Sfpi1!0.62!6.59!Sfpi1;;chr13:30841099..30841116,+!p1@Irf4!0.61!5.22!Irf4;;chr11:11585912..11585950,+!p6@Ikzf1!0.61!4.12!Ikzf1;;chr10:88996274..88996286,-!p4@Nr1h4!0.60!3.02!Nr1h4;;chr15:85565338..85565355,+!p7@Ppara!0.60!3.02!Ppara;;chr9:24578720..24578735,-!p1@Tbx20!0.60!3.02!Tbx20;;chr4:44723520..44723544,-!p2@Pax5!0.60!3.02!Pax5;;chr3:102768047..102768060,-!p1@Nr1h5!0.60!3.02!Nr1h5;;chr1:52176315..52176343,+!p1@Stat1!0.59!50.24!Stat1;;chr4:114730254..114730276,+!p2@Tal1!0.59!3.84!Tal1;;chr2:148506935..148506954,+!p2@Gzf1!0.58!6.31!Gzf1;;chr13:112476264..112476282,+!p3@Mier3!0.57!4.12!Mier3;;chr4:44723559..44723593,-!p1@Pax5!0.57!2.75!Pax5;;chr9:74714281..74714296,+!p5@Onecut1!0.57!2.75!Onecut1;;chr9:74714303..74714318,+!p2@Onecut1!0.57!2.75!Onecut1;;chr2:90936901..90936945,+!p1@Sfpi1!0.56!17.02!Sfpi1;;chr1:138846009..138846038,-!p3@Nr5a2!0.56!3.02!Nr5a2;;chr11:5420954..5420969,+!p2@Xbp1!0.55!39.54!Xbp1;;chr7:56136362..56136400,-!p1@E2f8!0.55!20.59!E2f8;;chr11:11585678..11585745,+!p5@Ikzf1!0.55!4.12!Ikzf1;;chr1:138845748..138845766,-!p4@Nr5a2!0.55!3.57!Nr5a2;;chr1:13364477..13364492,-!p6@Ncoa2!0.55!3.29!Ncoa2;;chr11:90250944..90250982,-!p2@Hlf!0.54!4.67!Hlf;;chr7:122989676..122989687,-!p8@Sox6!0.54!2.47!Sox6;;chr14:47896467..47896523,-!p1@Wdhd1!0.53!37.07!Wdhd1;;chr12:36219645..36219730,-!p1@Ahr!0.53!29.93!Ahr;;chr7:148452314..148452329,-!p1@Irf7!0.53!20.87!Irf7;;chr2:162880327..162880385,+!p2@Mybl2!0.53!20.32!Mybl2;;chr2:162880387..162880413,+!p1@Mybl2!0.53!18.94!Mybl2;;chr15:85566014..85566045,+!p3@Ppara!0.53!3.57!Ppara;;chr6:16848395..16848416,-!p2@Tfec!0.51!2.75!Tfec;;chr1:138846047..138846074,-!p5@Nr5a2!0.51!2.47!Nr5a2;;chr6:83299445..83299490,+!p1@Bola3!0.50!121.63!Bola3;;chr10:82226649..82226694,-!p2@Nfyb!0.50!17.85!Nfyb;;chr7:6649134..6649167,-!p1@Zim1!0.50!15.10!Zim1;;chr13:59923965..59924003,-!p2@Zcchc6!0.50!2.75!Zcchc6;;chr2:38206744..38206766,+!p1@Lhx2!0.50!2.75!Lhx2;;chr1:169548377..169548430,+!p1@Rxrg!0.50!2.20!Rxrg;;chr9:96159210..96159221,+!p10@Tfdp2!0.50!2.20!Tfdp2;;chr9:96159133..96159145,+!p9@Tfdp2!0.50!2.20!Tfdp2;;chr6:83301243..83301258,+!p2@Bola3!0.50!2.20!Bola3;;chr14:55330976..55330990,-!p1@Cebpe!0.50!2.20!Cebpe;;chr10:5734907..5734920,-!p11@Esr1!0.50!2.20!Esr1;;chr14:18493386..18493464,+!p1@Thrb!0.49!10.16!Thrb;;chr10:20880629..20880683,-!p1@Myb!0.49!7.41!Myb;;chr2:90936947..90936977,+!p2@Sfpi1!0.49!4.94!Sfpi1;;chr2:173044357..173044377,-!p2@Zbp1!0.49!3.29!Zbp1;;chr6:144730427..144730508,-!p1@Sox5!0.48!16.47!Sox5;;chr2:27532513..27532525,+!p8@Rxra!0.48!2.47!Rxra;;chr11:60023912..60023930,-!p1@Srebf1!0.47!64.80!Srebf1;;chr17:87153505..87153516,+!p6@Epas1!0.47!3.02!Epas1;;chr4:87452236..87452249,-!p9@Mllt3!0.47!1.92!Mllt3;;chr9:74709664..74709671,+!p6@Onecut1!0.47!1.92!Onecut1;;chr1:138857112..138857130,-!p7@Nr5a2!0.47!1.92!Nr5a2;;chr7:17642177..17642223,-!p3@Hif3a!0.47!1.92!Hif3a;;chr8:124806017..124806040,+!p2@Zfpm1!0.46!28.01!Zfpm1;;chr11:101413151..101413207,-!p1@Brca1!0.46!24.99!Brca1;;chr13:55431084..55431137,-!p1@Mxd3!0.46!20.04!Mxd3;;chr18:3281034..3281104,-!p1@Crem!0.46!18.12!Crem;;chr1:135551736..135551746,-!p3@Zc3h11a!0.46!3.29!Zc3h11a;;chr11:121380611..121380625,-!p3@Zfp750!0.46!2.47!Zfp750;;chr16:55966407..55966447,+!p6@Rpl24,p6@Zbtb11!0.45!5.49!Zbtb11;;chrX:103070960..103070973,-!p7@Atrx!0.45!2.75!Atrx;;chr13:112476296..112476308,+!p4@Mier3!0.45!2.20!Mier3;;chr19:10315179..10315241,-!p1@Gm98!0.44!25.53!Gm98;;chr1:194979315..194979359,+!p1@Irf6!0.44!14.55!Irf6;;chr14:52640373..52640412,-!p1@Zfp219!0.44!14.28!Zfp219;;chr2:160698288..160698358,-!p3@Zhx3!0.44!7.14!Zhx3;;chr11:100683839..100683890,-!p2@Stat5b!0.44!5.22!Stat5b;;chr7:56136349..56136360,-!p5@E2f8!0.44!2.47!E2f8;;chr11:121380594..121380609,-!p2@Zfp750!0.43!3.57!Zfp750;;chr6:115310872..115310899,+!p2@Pparg!0.43!3.57!Pparg;;chr8:124984566..124984595,-!p1@Snai3!0.43!3.02!Snai3;;chr1:87546583..87546595,+!p1@Sp100!0.43!2.75!Sp100;;chr14:32979290..32979309,+!p3@Gm6768,p3@Ncoa4!0.43!2.20!Ncoa4;;chr2:27532754..27532815,+!p1@Rxra!0.42!69.19!Rxra;;chr4:63064364..63064384,-!p1@Akna!0.42!6.31!Akna;;chr11:53583960..53584007,+!p2@Irf1!0.42!4.39!Irf1;;chr14:32978970..32978984,+!p2@Gm6768,p2@Ncoa4!0.42!3.02!Ncoa4;;chr11:120491440..120491474,-!p3@Mafg!0.42!2.75!Mafg;;chr11:5420655..5420659,+!p3@Xbp1!0.42!1.65!Xbp1;;chr11:83664334..83664353,+!p2@Hnf1b!0.42!1.65!Hnf1b;;chr13:83643159..83643226,+!p3@Mef2c!0.42!1.65!Mef2c;;chr2:166868994..166869023,-!p7@Znfx1!0.42!1.65!Znfx1;;chr6:83301229..83301242,+!p3@Bola3!0.42!1.65!Bola3;;chr7:119885539..119885574,+!p3@Tead1!0.42!1.65!Tead1;;chr4:114732159..114732166,+!p6@Tal1!0.42!1.65!Tal1;;chr5:104183477..104183548,+!p6@Aff1!0.41!3.84!Aff1;;chr7:56136402..56136420,-!p3@E2f8!0.41!3.57!E2f8;;chr10:22451765..22451795,-!p6@Tbpl1!0.41!2.75!Tbpl1;;chr5:104183579..104183600,+!p9@Aff1!0.41!1.92!Aff1;;chr8:123260252..123260264,+!p1@Irf8!0.40!15.38!Irf8;;chr6:134780234..134780288,+!p1@Crebl2!0.40!6.59!Crebl2;;chr4: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54453,-!p4@Zfp367!0.06!0.55!Zfp367;;chr15:40486540..40486550,+!p6@Zfpm2!0.06!0.55!Zfpm2;;chr3:54611659..54611668,-!p4@Rfxap!0.06!0.55!Rfxap;;chr2:90922519..90922544,+!p6@Sfpi1!0.06!0.27!Sfpi1;;chr3:29912079..29912096,-!p10@Mecom!0.06!0.27!Mecom;;chr9:72379740..72379757,+!p7@Rfx7!0.06!0.27!Rfx7;;chr7:26067803..26067814,+!p11@Cic!0.06!0.27!Cic;;chr9:31720843..31720888,-!p1@Barx2!0.06!0.27!Barx2;;chr9:111020710..111020721,+!p2@Lrrfip2!0.06!0.27!Lrrfip2;;chr10:13686074..13686090,+!p9@Hivep2!0.06!0.27!Hivep2;;chr11:44431191..44431205,+!p11@Ebf1!0.06!0.27!Ebf1;;chr10:128083021..128083044,-!p2@Ikzf4!0.06!0.27!Ikzf4;;chr5:38611816..38611827,+!p4@Lyar!0.06!0.27!Lyar;;chr9:111020574..111020687,+!p1@Lrrfip2!0.05!45.03!Lrrfip2;;chr12:99985145..99985256,+!p1@Zc3h14!0.05!33.22!Zc3h14;;chr3:52072329..52072346,+!p1@Foxo1!0.05!14.83!Foxo1;;chr10:82226781..82226825,-!p1@Nfyb!0.05!11.81!Nfyb;;chr10:67599319..67599360,-!p2@Arid5b!0.05!10.43!Arid5b;;chr7:52471143..52471186,+!p1@Tead2!0.05!10.16!Tead2;;chr16:87699149..87699204,+!p2@Bach1!0.05!7.41!Bach1;;chr13:21622953..21622972,-!p2@Zfp192!0.05!5.22!Zfp192;;chr19:12870598..12870636,-!p1@U05342,p1@Zfp91!0.05!4.39!Zfp91;;chr2:72818978..72818997,-!p4@Sp3!0.05!3.57!Sp3;;chr15:25914114..25914128,+!p2@Zfp622!0.05!3.29!Zfp622;;chr8:72498217..72498232,-!p8@Gatad2a!0.05!3.02!Gatad2a;;chr7:134169810..134169824,-!p7@Maz!0.05!3.02!Maz;;chr18:84758852..84758878,-!p2@Zfp407!0.05!3.02!Zfp407;;chr4:131817511..131817537,-!p2@Gmeb1!0.05!2.47!Gmeb1;;chr14:65568469..65568511,-!p2@Hmbox1!0.05!2.47!Hmbox1;;chr13:30076280..30076334,-!p3@E2f3!0.05!2.20!E2f3;;chr18:3337537..3337598,-!p4@Crem!0.05!2.20!Crem;;chr11:102179074..102179099,-!p4@Ubtf!0.05!2.20!Ubtf;;chr1:186556323..186556370,-!p2@Hlx!0.05!1.92!Hlx;;chr1:74634691..74634719,-!p2@Zfp142!0.05!1.65!Zfp142;;chr14:100684075..100684098,-!p3@Klf12!0.05!1.65!Klf12;;chr4:97444537..97444555,+!p8@Nfia!0.05!1.65!Nfia;;chr14:52639709..52639753,-!p5@Zfp219!0.05!1.37!Zfp219;;chr5:134790276..134790294,-!p7@Gtf2i!0.05!1.37!Gtf2i;;chr2:34227524..34227547,-!p2@Pbx3!0.05!1.10!Pbx3;;chr17:34729160..34729171,+!p3@Pbx2!0.05!1.10!Pbx2;;chr11:3189171..3189197,+!p4@Patz1!0.05!1.10!Patz1;;chr8:72498017..72498059,-!p13@Gatad2a!0.05!0.82!Gatad2a;;chr15:88582079..88582091,+!p1@Gm15583,p1@Zbed4!0.05!0.82!Zbed4;;chr13:37870281..37870293,+!p10@Rreb1!0.05!0.82!Rreb1;;chr2:120996813..120996829,-!p2@Zscan29!0.05!0.82!Zscan29;;chr10:107769229..107769238,+!p3@Pawr!0.05!0.55!Pawr;;chr7:134169648..134169657,-!p14@Maz!0.05!0.55!Maz;;chr6:47785727..47785738,+!p6@Zfp398!0.05!0.55!Zfp398;;chr4:102786990..102786999,+!p11@Mier1!0.05!0.55!Mier1;;chr4:114729646..114729665,+!p4@Tal1!0.05!0.55!Tal1;;chr12:72149325..72149343,+!p2@Arid4a!0.05!0.55!Arid4a;;chr17:46693053..46693064,-!p4@Srf!0.05!0.55!Srf;;chr16:91270004..91270023,+!p1@Olig1!0.05!0.27!Olig1;;chr16:3872378..3872411,-!p6@Zfp597!0.05!0.27!Zfp597;;chr17:46692986..46692993,-!p6@Srf!0.05!0.27!Srf;;chr18:5334737..5334749,-!p5@Zfp438!0.05!0.27!Zfp438;;chr2:126501847..126501876,-!p5@Gabpb1!0.05!0.27!Gabpb1;;chr2:32218688..32218697,+!p6@Ciz1!0.05!0.27!Ciz1;;chr11:98821917..98821934,+!p11@Rara!0.05!0.27!Rara;;chr11:98636373..98636387,-!p5@Nr1d1!0.05!0.27!Nr1d1;;chr13:44829403..44829438,+!p11@Jarid2!0.05!0.27!Jarid2;;chr13:15555428..15555440,+!p7@Gli3!0.05!0.27!Gli3;;chr5:107003699..107003717,-!p11@Zfp644!0.05!0.27!Zfp644;;chr8:72663586..72663633,+!p1@2310045N01Rik,p1@Mef2b!0.04!48.87!Mef2b;;chr8:13338760..13338817,+!p1@Tfdp1!0.04!33.50!Tfdp1;;chr13:53076396..53076452,-!p1@Nfil3!0.04!17.02!Nfil3;;
+|ffid_belonging_in_development=UBERON:0001041,UBERON:0002532,UBERON:0006595,UBERON:0003104,UBERON:0004161,UBERON:0009497,UBERON:0010316,FF:0000294
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 36: / Line 42: @@
 |has_quality=
 |id=FF:1345-25G2
-|is_a=EFO:0002091;;FF:0000004;;FF:0000103;;FF:0011484
+|is_a=EFO:0002091;;FF:0011484
+|is_obsolete=
+|library_id=CNhs11123
+|library_id_phase_based=2:CNhs11123
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;1345
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;1345
+|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/liver%252c%2520neonate%2520N03.CNhs11123.1345-25G2.mm10.nobarcode.bam
+|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/liver%252c%2520neonate%2520N03.CNhs11123.1345-25G2.mm10.nobarcode.ctss.bed.gz
+|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/liver%252c%2520neonate%2520N03.CNhs11123.1345-25G2.mm9.nobarcode.bam
+|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/liver%252c%2520neonate%2520N03.CNhs11123.1345-25G2.mm9.ctss.bed.gz
+|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/liver%252c%2520neonate%2520N03.CNhs11123.1345-25G2.mm9.nobarcode.rdna.fa.gz
 |name=liver, neonate N03
 |namespace=FANTOM5
@@ Line 42: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11123,LSID734,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
+|repeat_enrich_byfamily=0.254539766471566,0,0,0,0,0.0114513745225884,0.209431452485704,0,0,0,0,0.105746612935698,0,0,0,0,0.05268038312984,0,-0.0865325846228947,0,0,0,0.10536076625968,0,0,0,0,0,0,0,0,0,0.305786343393618,0,0,0,0.685191563116461,0,0.248539092900809,-0.0963881536645324,0.0992810704353373,0.54306796973835,-0.0797827846781114,0,0,0,0,0,0,0,0,0,0,0.10536076625968,0,0.0393552186962396,0,0,0,0,0.0483811527370244,0,0,0,0,0,0.174013185543531,0.155019134085955,-0.158091042771083,0.120261961642833,0,0,-0.0893797492525511,-0.0120355312205505,0.375262426964128,0,-0.00151161344130554,-0.215658486927492,0.135914139222193,0.182118050070218,0,0,0,0,0,0,0.0640691727214839,0.377998574576906,-0.0138319095684853,0,0,0,0,0.05268038312984
 |rna_box=25
 |rna_catalog_number=
@@ Line 57: / Line 76: @@
 |rna_weight_ug=
 |sample_age=
+|sample_category=developmental
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 76: / Line 96: @@
 |sample_tissue=liver
 |top_motifs=NKX2-2,8:3.5561888188;FOX{F1,F2,J1}:2.71399166833;FOXA2:2.59109133112;RXR{A,B,G}_{NR1H2,PPAR}dimers:2.42201819214;HNF1A:2.18958260816;GATA6:2.12576787154;NFIL3:2.02681422262;CEBPA,B_DDIT3:1.98935672274;PAX1,9:1.81847722321;HNF4A_NR2F1,2:1.74492843032;NR6A1:1.61705079203;FOX{D1,D2}:1.53798309516;HLF:1.46245793661;ARID5B:1.37315024769;ONECUT1,2:1.29399883972;STAT2,4,6:1.27704085068;PITX1..3:1.18701908116;CDX1,2,4:1.12822952286;GZF1:0.950188479687;FOXM1:0.942362883032;ZNF423:0.942274983736;E2F1..5:0.886881869189;NFIX:0.885086409474;PBX1:0.834580733843;NKX3-2:0.818876188208;CUX2:0.776628321212;EBF1:0.699545337725;STAT5{A,B}:0.672841800447;EVI1:0.652264848931;GCM1,2:0.641972459541;FOXD3:0.611695692843;HMGA1,2:0.595259677282;FOXP1:0.589178496262;NFY{A,B,C}:0.545682605342;PAX4:0.541588314576;NFE2:0.459643122689;IRF1,2:0.444288403694;ALX4:0.415868603868;TP53:0.361567372711;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.354405026411;RXRA_VDR{dimer}:0.351731103676;POU3F1..4:0.321593588127;TBP:0.287863106157;RORA:0.286653161231;UFEwm:0.269394033716;SPIB:0.261930311633;NR1H4:0.255108122017;NR5A1,2:0.201020832769;POU1F1:0.195158080333;ZBTB16:0.19168343618;HOXA9_MEIS1:0.158159436165;ELF1,2,4:0.136371215704;TLX1..3_NFIC{dimer}:0.131405973255;AIRE:0.119019953057;IKZF2:0.0959048294874;DBP:0.0900093921305;NR3C1:0.0491472041812;MYB:0.0426101022148;SPI1:0.0397619762381;ESRRA:0.0278879906791;EN1,2:-0.00978002797081;MYBL2:-0.0665486184174;GFI1:-0.0949041612637;TLX2:-0.0969786039471;SNAI1..3:-0.103667021526;YY1:-0.113008465961;SRF:-0.148024349446;IRF7:-0.152639508422;IKZF1:-0.165807676001;RUNX1..3:-0.167774737061;ETS1,2:-0.182819937859;DMAP1_NCOR{1,2}_SMARC:-0.18482451867;PAX6:-0.188577419444;RBPJ:-0.23701445661;MYOD1:-0.242218025206;TEF:-0.242390569115;bHLH_family:-0.24440518993;PAX8:-0.245580151114;RXR{A,B,G}:-0.29649952348;PAX5:-0.313918617864;HSF1,2:-0.314946544415;FOXL1:-0.318705875189;MEF2{A,B,C,D}:-0.329416466483;PPARG:-0.355402180687;NFE2L2:-0.388401011683;NANOG{mouse}:-0.40067473125;GATA4:-0.402858650916;ZEB1:-0.405598529063;BPTF:-0.405886849053;BACH2:-0.415439894341;MTF1:-0.417061093302;OCT4_SOX2{dimer}:-0.460064897833;STAT1,3:-0.460240770193;CREB1:-0.469512156356;TAL1_TCF{3,4,12}:-0.500993091006;PAX2:-0.518766191266;ELK1,4_GABP{A,B1}:-0.522323761806;GFI1B:-0.523732274866;PDX1:-0.534611950142;LEF1_TCF7_TCF7L1,2:-0.576537157704;MYFfamily:-0.589010782434;LMO2:-0.590131992405;LHX3,4:-0.606464202895;HAND1,2:-0.613985108177;NFKB1_REL_RELA:-0.632135848816;FOXQ1:-0.636969553096;ZIC1..3:-0.641611211667;NFE2L1:-0.656596049142;TOPORS:-0.66158757637;KLF4:-0.680251130649;POU6F1:-0.693264592688;XCPE1{core}:-0.697335190236;FOXP3:-0.719673883065;TGIF1:-0.726128037606;ADNP_IRX_SIX_ZHX:-0.734140970295;REST:-0.746146682771;HIF1A:-0.755485172786;SREBF1,2:-0.762720720138;TEAD1:-0.775517314351;HOX{A5,B5}:-0.776248857513;ZNF148:-0.790526367785;TFAP4:-0.796436456777;ATF5_CREB3:-0.798262011676;RREB1:-0.80609876;NKX6-1,2:-0.827196505025;NKX2-3_NKX2-5:-0.827229155836;HOX{A4,D4}:-0.833725558883;ZBTB6:-0.845544336636;SP1:-0.847442522964;SOX5:-0.857303903328;NKX3-1:-0.8693811308;T:-0.893747660673;VSX1,2:-0.903503720708;SOX{8,9,10}:-0.906511172007;FOXO1,3,4:-0.909458322117;NHLH1,2:-0.91103007576;CDC5L:-0.938233626557;GLI1..3:-0.942345446132;SOX17:-0.957835165034;AHR_ARNT_ARNT2:-0.961937328508;TFCP2:-0.964437537038;ZNF143:-0.965495611201;NRF1:-1.00490286349;ATF6:-1.01973606215;FOSL2:-1.0337112137;MAZ:-1.04315148492;SMAD1..7,9:-1.04721369259;ZNF238:-1.07697687458;PATZ1:-1.08567821851;POU2F1..3:-1.08975429844;POU5F1:-1.09826782277;AR:-1.10216018122;TBX4,5:-1.10976980914;FOX{I1,J2}:-1.11316691625;MAFB:-1.12091268194;RFX1:-1.12863340234;HES1:-1.13329811121;GTF2I:-1.13972582188;MED-1{core}:-1.14210582663;HMX1:-1.14228199089;EGR1..3:-1.177102278;PRRX1,2:-1.22769502584;FOS_FOS{B,L1}_JUN{B,D}:-1.22974616158;BREu{core}:-1.23057953221;ZFP161:-1.24600993025;CRX:-1.26338684661;PRDM1:-1.29091773629;MZF1:-1.30085596778;ATF4:-1.38494588952;GTF2A1,2:-1.39818356511;ESR1:-1.40918338889;TFDP1:-1.44315381213;HIC1:-1.45390433506;MTE{core}:-1.47364681334;JUN:-1.50751780748;TFAP2B:-1.50788394418;ATF2:-1.54774988021;ZNF384:-1.58822980786;NKX2-1,4:-1.61102138907;SOX2:-1.62910495769;NFATC1..3:-1.73097852738;FOXN1:-1.80514382773;RFX2..5_RFXANK_RFXAP:-1.83287012645;TFAP2{A,C}:-1.83418755727;ALX1:-2.00567495784;SPZ1:-2.04966703258;NANOG:-2.14591472887;EP300:-2.18710511972;HBP1_HMGB_SSRP1_UBTF:-3.50736532772
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:1345-25G2;search_select_hide=table117:1345-25G2
 }}

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FF:1345-25G2: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:59, 4 June 2020

CNhs11123

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0