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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00004786
|DRA_sample_Accession=CAGE@SAMD00004786
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004786
|HumanCAGEScanFiles=NCig10043;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Intestinal%2520epithelial%2520cells%2520%28polarized%29%252c%2520donor1.NCig10043.11246-116E4.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Intestinal%2520epithelial%2520cells%2520%28polarized%29%252c%2520donor1.NCig10043.11246-116E4.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Intestinal%2520epithelial%2520cells%2520%28polarized%29%252c%2520donor1.NCig10043.11246-116E4.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Intestinal%2520epithelial%2520cells%2520%28polarized%29%252c%2520donor1.NCig10043.11246-116E4.hg19.GCTATA.pairs.bed.gz
|HumanCAGEScanFiles=NCig10043;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Intestinal%2520epithelial%2520cells%2520%28polarized%29%252c%2520donor1.NCig10043.11246-116E4.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Intestinal%2520epithelial%2520cells%2520%28polarized%29%252c%2520donor1.NCig10043.11246-116E4.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Intestinal%2520epithelial%2520cells%2520%28polarized%29%252c%2520donor1.NCig10043.11246-116E4.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Intestinal%2520epithelial%2520cells%2520%28polarized%29%252c%2520donor1.NCig10043.11246-116E4.hg19.GCTATA.pairs.bed.gz
|accession_numbers=CAGE;DRX008310;DRR009182;DRZ000607;DRZ001992
|accession_numbers=CAGE;DRX008310;DRR009182;DRZ000607;DRZ001992;DRZ011957;DRZ013342
|accession_numbers_RNASeq=sRNA-Seq;DRX036993;DRR041359;DRZ007001
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000160,UBERON:0000483,UBERON:0001242,UBERON:0000479,UBERON:0001007,UBERON:0000344,UBERON:0000064,UBERON:0004119,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0005911,UBERON:0004923,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0000060,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0001262,UBERON:0004786,UBERON:0000485,UBERON:0003350,UBERON:0003929,UBERON:0004808,UBERON:0001277,UBERON:0010317,UBERON:0001555,UBERON:0005409
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|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0002563,CL:0000255,CL:0002076,CL:0002251
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0002563,CL:0000255,CL:0002076,CL:0002251
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|library_id=CNhs10875
|library_id=CNhs10875
|library_id_phase_based=2:CNhs10875
|library_id_phase_based=2:CNhs10875
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11246
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10002.GCCAAT.11246
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11246
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10002.GCCAAT.11246
|name=Intestinal epithelial cells (polarized), donor1
|name=Intestinal epithelial cells (polarized), donor1
|namespace=FANTOM5
|namespace=FANTOM5
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|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=SRhi10002,,,
|profile_srnaseq=SRhi10002,,,
|refex=http://refex.dbcls.jp/genelist.php?lang=en&db=human&roku_valid=1&rk[]=&order_key=score
|refex=http://refex.dbcls.jp/genelist.php?lang
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|sample_category=primary cells
Line 98: Line 107:
|top_motifs=HNF1A:4.88835935984;HNF4A_NR2F1,2:4.82229222128;SNAI1..3:2.49493833079;FOXA2:2.01438286729;ZEB1:1.93758529799;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.81648778893;FOX{F1,F2,J1}:1.77574581186;ESRRA:1.50437014925;NFY{A,B,C}:1.4425449436;MYOD1:1.32429836437;LEF1_TCF7_TCF7L1,2:1.26674692883;bHLH_family:1.21711568017;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.16189307656;ONECUT1,2:1.13270469854;LHX3,4:1.11192178367;NKX3-2:1.09313597131;RBPJ:1.08753157445;T:1.08696681104;ELK1,4_GABP{A,B1}:0.995427630601;PDX1:0.995035757386;HOX{A6,A7,B6,B7}:0.989369161307;SP1:0.968497638825;FOX{D1,D2}:0.959060894232;NKX2-3_NKX2-5:0.938560200754;GATA6:0.91579646744;ADNP_IRX_SIX_ZHX:0.746686131239;NR6A1:0.712936507265;ESR1:0.70039178976;E2F1..5:0.688992762231;TBP:0.662550827987;TEAD1:0.634374599354;PBX1:0.624489488794;LMO2:0.615917218362;SREBF1,2:0.597790283863;NRF1:0.565119829652;STAT1,3:0.563955279919;TBX4,5:0.534411838879;GFI1:0.531605952582;XCPE1{core}:0.468747918968;SOX{8,9,10}:0.45947197621;FOXM1:0.450336093804;EVI1:0.44327066253;HLF:0.425979311145;FOXN1:0.408556355915;RORA:0.38192068004;SOX17:0.330495766258;EN1,2:0.317396060913;ZNF143:0.297724739441;FOXQ1:0.278326566653;ATF6:0.258121124828;MAZ:0.238267062207;VSX1,2:0.221873905656;FOXD3:0.217318252268;YY1:0.199552683861;CEBPA,B_DDIT3:0.187589307946;HOX{A5,B5}:0.159374261374;ALX4:0.159174783369;HAND1,2:0.131312423694;ZNF148:0.128690778816;ATF4:0.117795228692;TOPORS:0.0760219092834;PAX5:0.0711382093775;HOXA9_MEIS1:0.0654949243073;CRX:0.0435057018617;PAX3,7:0.0412808183953;MED-1{core}:0.0148444027062;FOXO1,3,4:0.000322065797099;MYB:-0.00595350793319;PATZ1:-0.0109685397265;IKZF2:-0.0306958133976;SOX5:-0.0332297133846;PITX1..3:-0.0342285600721;TFDP1:-0.0631133240045;ZFP161:-0.0873633719946;STAT5{A,B}:-0.0898417248617;IRF7:-0.0950185154114;AIRE:-0.0952850543045;ALX1:-0.0960136679145;HIC1:-0.0974870138491;ATF2:-0.107322968004;MTF1:-0.110963780513;STAT2,4,6:-0.141582453815;NFIL3:-0.180129384145;FOSL2:-0.184163149265;NR5A1,2:-0.193926218517;TFCP2:-0.19501014714;TEF:-0.195783729026;RXR{A,B,G}:-0.212693998681;IRF1,2:-0.22026220469;SOX2:-0.223328370145;MTE{core}:-0.225528387267;FOS_FOS{B,L1}_JUN{B,D}:-0.243432139519;RXRA_VDR{dimer}:-0.244751535862;NFKB1_REL_RELA:-0.256583797898;IKZF1:-0.263352514604;CUX2:-0.27234022627;POU6F1:-0.273106184269;ELF1,2,4:-0.279384281996;DBP:-0.280589084085;ARID5B:-0.284691867427;PAX2:-0.292041838231;NFE2:-0.296140337224;CDX1,2,4:-0.305485795864;TFAP2{A,C}:-0.31252287933;UFEwm:-0.328430686003;FOXP1:-0.331951371304;EBF1:-0.349266337614;POU2F1..3:-0.373324364634;ATF5_CREB3:-0.374523641091;ZNF384:-0.40442194314;KLF4:-0.411036115653;TP53:-0.413087474747;HOX{A4,D4}:-0.418383310486;NHLH1,2:-0.440607748022;BACH2:-0.444228415276;TFAP2B:-0.456253647726;HSF1,2:-0.464057773747;RFX2..5_RFXANK_RFXAP:-0.471891803734;DMAP1_NCOR{1,2}_SMARC:-0.495511762921;ZBTB6:-0.495549119333;MYBL2:-0.511091649711;BREu{core}:-0.531752048311;GTF2A1,2:-0.547054409687;TAL1_TCF{3,4,12}:-0.563682568823;NFE2L2:-0.564983758624;PRRX1,2:-0.565814479886;RREB1:-0.56634294178;TLX2:-0.569884911644;PAX4:-0.573164806885;JUN:-0.57476157043;NFIX:-0.58880342758;REST:-0.593035565494;OCT4_SOX2{dimer}:-0.603360651925;PAX1,9:-0.6129735823;FOXP3:-0.629843412109;XBP1:-0.671473045924;MYFfamily:-0.680057926392;POU5F1:-0.693201824466;MEF2{A,B,C,D}:-0.697622480319;SPI1:-0.698179655936;SPIB:-0.724554924149;NR3C1:-0.735944093491;FOX{I1,J2}:-0.744405270892;ZBTB16:-0.747670935335;MAFB:-0.778524060925;PPARG:-0.78058614556;GTF2I:-0.783977630456;TLX1..3_NFIC{dimer}:-0.799623249846;POU1F1:-0.817288033352;HES1:-0.823803083537;EP300:-0.83732366666;AHR_ARNT_ARNT2:-0.838703115491;ETS1,2:-0.84070351625;CDC5L:-0.842277179944;NANOG:-0.845916723349;POU3F1..4:-0.863022620981;PRDM1:-0.864686730331;MZF1:-0.870462039767;HMGA1,2:-0.887128989717;RUNX1..3:-0.897941518752;ZIC1..3:-0.910472299098;ZNF238:-0.915564131281;GZF1:-0.915848079457;SPZ1:-0.916393870183;FOXL1:-0.918521104483;GFI1B:-0.923027412555;EGR1..3:-0.92358664601;RFX1:-0.928942161069;PAX8:-0.938757429378;TFAP4:-0.95721880937;SRF:-0.992502592444;AR:-1.02137562701;NR1H4:-1.11545415516;ZNF423:-1.11902211212;NANOG{mouse}:-1.13328289362;CREB1:-1.15554703209;GLI1..3:-1.21531694014;NKX6-1,2:-1.23295375558;TGIF1:-1.23743705408;BPTF:-1.27970145612;PAX6:-1.28890470862;NKX2-1,4:-1.29571152893;GCM1,2:-1.31374556469;HBP1_HMGB_SSRP1_UBTF:-1.33792311686;HIF1A:-1.3497167218;NKX3-1:-1.44722800322;HMX1:-1.55182415421;GATA4:-1.63064798004;NKX2-2,8:-1.64070220919;SMAD1..7,9:-1.67685450194;NFATC1..3:-1.70707269326;NFE2L1:-1.73282466025
|top_motifs=HNF1A:4.88835935984;HNF4A_NR2F1,2:4.82229222128;SNAI1..3:2.49493833079;FOXA2:2.01438286729;ZEB1:1.93758529799;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.81648778893;FOX{F1,F2,J1}:1.77574581186;ESRRA:1.50437014925;NFY{A,B,C}:1.4425449436;MYOD1:1.32429836437;LEF1_TCF7_TCF7L1,2:1.26674692883;bHLH_family:1.21711568017;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.16189307656;ONECUT1,2:1.13270469854;LHX3,4:1.11192178367;NKX3-2:1.09313597131;RBPJ:1.08753157445;T:1.08696681104;ELK1,4_GABP{A,B1}:0.995427630601;PDX1:0.995035757386;HOX{A6,A7,B6,B7}:0.989369161307;SP1:0.968497638825;FOX{D1,D2}:0.959060894232;NKX2-3_NKX2-5:0.938560200754;GATA6:0.91579646744;ADNP_IRX_SIX_ZHX:0.746686131239;NR6A1:0.712936507265;ESR1:0.70039178976;E2F1..5:0.688992762231;TBP:0.662550827987;TEAD1:0.634374599354;PBX1:0.624489488794;LMO2:0.615917218362;SREBF1,2:0.597790283863;NRF1:0.565119829652;STAT1,3:0.563955279919;TBX4,5:0.534411838879;GFI1:0.531605952582;XCPE1{core}:0.468747918968;SOX{8,9,10}:0.45947197621;FOXM1:0.450336093804;EVI1:0.44327066253;HLF:0.425979311145;FOXN1:0.408556355915;RORA:0.38192068004;SOX17:0.330495766258;EN1,2:0.317396060913;ZNF143:0.297724739441;FOXQ1:0.278326566653;ATF6:0.258121124828;MAZ:0.238267062207;VSX1,2:0.221873905656;FOXD3:0.217318252268;YY1:0.199552683861;CEBPA,B_DDIT3:0.187589307946;HOX{A5,B5}:0.159374261374;ALX4:0.159174783369;HAND1,2:0.131312423694;ZNF148:0.128690778816;ATF4:0.117795228692;TOPORS:0.0760219092834;PAX5:0.0711382093775;HOXA9_MEIS1:0.0654949243073;CRX:0.0435057018617;PAX3,7:0.0412808183953;MED-1{core}:0.0148444027062;FOXO1,3,4:0.000322065797099;MYB:-0.00595350793319;PATZ1:-0.0109685397265;IKZF2:-0.0306958133976;SOX5:-0.0332297133846;PITX1..3:-0.0342285600721;TFDP1:-0.0631133240045;ZFP161:-0.0873633719946;STAT5{A,B}:-0.0898417248617;IRF7:-0.0950185154114;AIRE:-0.0952850543045;ALX1:-0.0960136679145;HIC1:-0.0974870138491;ATF2:-0.107322968004;MTF1:-0.110963780513;STAT2,4,6:-0.141582453815;NFIL3:-0.180129384145;FOSL2:-0.184163149265;NR5A1,2:-0.193926218517;TFCP2:-0.19501014714;TEF:-0.195783729026;RXR{A,B,G}:-0.212693998681;IRF1,2:-0.22026220469;SOX2:-0.223328370145;MTE{core}:-0.225528387267;FOS_FOS{B,L1}_JUN{B,D}:-0.243432139519;RXRA_VDR{dimer}:-0.244751535862;NFKB1_REL_RELA:-0.256583797898;IKZF1:-0.263352514604;CUX2:-0.27234022627;POU6F1:-0.273106184269;ELF1,2,4:-0.279384281996;DBP:-0.280589084085;ARID5B:-0.284691867427;PAX2:-0.292041838231;NFE2:-0.296140337224;CDX1,2,4:-0.305485795864;TFAP2{A,C}:-0.31252287933;UFEwm:-0.328430686003;FOXP1:-0.331951371304;EBF1:-0.349266337614;POU2F1..3:-0.373324364634;ATF5_CREB3:-0.374523641091;ZNF384:-0.40442194314;KLF4:-0.411036115653;TP53:-0.413087474747;HOX{A4,D4}:-0.418383310486;NHLH1,2:-0.440607748022;BACH2:-0.444228415276;TFAP2B:-0.456253647726;HSF1,2:-0.464057773747;RFX2..5_RFXANK_RFXAP:-0.471891803734;DMAP1_NCOR{1,2}_SMARC:-0.495511762921;ZBTB6:-0.495549119333;MYBL2:-0.511091649711;BREu{core}:-0.531752048311;GTF2A1,2:-0.547054409687;TAL1_TCF{3,4,12}:-0.563682568823;NFE2L2:-0.564983758624;PRRX1,2:-0.565814479886;RREB1:-0.56634294178;TLX2:-0.569884911644;PAX4:-0.573164806885;JUN:-0.57476157043;NFIX:-0.58880342758;REST:-0.593035565494;OCT4_SOX2{dimer}:-0.603360651925;PAX1,9:-0.6129735823;FOXP3:-0.629843412109;XBP1:-0.671473045924;MYFfamily:-0.680057926392;POU5F1:-0.693201824466;MEF2{A,B,C,D}:-0.697622480319;SPI1:-0.698179655936;SPIB:-0.724554924149;NR3C1:-0.735944093491;FOX{I1,J2}:-0.744405270892;ZBTB16:-0.747670935335;MAFB:-0.778524060925;PPARG:-0.78058614556;GTF2I:-0.783977630456;TLX1..3_NFIC{dimer}:-0.799623249846;POU1F1:-0.817288033352;HES1:-0.823803083537;EP300:-0.83732366666;AHR_ARNT_ARNT2:-0.838703115491;ETS1,2:-0.84070351625;CDC5L:-0.842277179944;NANOG:-0.845916723349;POU3F1..4:-0.863022620981;PRDM1:-0.864686730331;MZF1:-0.870462039767;HMGA1,2:-0.887128989717;RUNX1..3:-0.897941518752;ZIC1..3:-0.910472299098;ZNF238:-0.915564131281;GZF1:-0.915848079457;SPZ1:-0.916393870183;FOXL1:-0.918521104483;GFI1B:-0.923027412555;EGR1..3:-0.92358664601;RFX1:-0.928942161069;PAX8:-0.938757429378;TFAP4:-0.95721880937;SRF:-0.992502592444;AR:-1.02137562701;NR1H4:-1.11545415516;ZNF423:-1.11902211212;NANOG{mouse}:-1.13328289362;CREB1:-1.15554703209;GLI1..3:-1.21531694014;NKX6-1,2:-1.23295375558;TGIF1:-1.23743705408;BPTF:-1.27970145612;PAX6:-1.28890470862;NKX2-1,4:-1.29571152893;GCM1,2:-1.31374556469;HBP1_HMGB_SSRP1_UBTF:-1.33792311686;HIF1A:-1.3497167218;NKX3-1:-1.44722800322;HMX1:-1.55182415421;GATA4:-1.63064798004;NKX2-2,8:-1.64070220919;SMAD1..7,9:-1.67685450194;NFATC1..3:-1.70707269326;NFE2L1:-1.73282466025
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11246-116E4;search_select_hide=table117:FF:11246-116E4
}}
}}

Latest revision as of 16:27, 3 June 2020

Name:Intestinal epithelial cells (polarized), donor1
Species:Human (Homo sapiens)
Library ID:CNhs10875
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuesmall intestine
dev stage19 years old adult
sexunknown
age19
cell typeepithelial cell, intestinal
cell lineNA
companyCell systems
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberN/A
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004786
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10875 CAGE DRX008310 DRR009182
Accession ID Hg19

Library idBAMCTSS
CNhs10875 DRZ000607 DRZ001992
Accession ID Hg38

Library idBAMCTSS
CNhs10875 DRZ011957 DRZ013342
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload
HumanCAGEScan Download raw sequence, BAM & CTSS

Library id3prime-FASTQ5prime-FASTQBAMCTSS
NCig10043downloaddownloaddownloaddownload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00004786
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10002.GCCAAT sRNA-Seq DRX036993 DRR041359
Accession ID Hg19

Library idBAMCTSS
SRhi10002.GCCAAT DRZ007001


Relative expression to median (log10)


Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample


JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10875



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10875



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10875


FANTOM5 (FF) ontology


Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0002563 (intestinal epithelial cell)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002251 (epithelial cell of alimentary canal)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000160 (intestine)
0000483 (epithelium)
0001242 (intestinal mucosa)
0000479 (tissue)
0001007 (digestive system)
0000344 (mucosa)
0000064 (organ part)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0005911 (endo-epithelium)
0004923 (organ component layer)
0004921 (subdivision of digestive tract)
0000477 (anatomical cluster)
0000467 (anatomical system)
0000060 (anatomical wall)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0001262 (wall of intestine)
0004786 (gastrointestinal system mucosa)
0000485 (simple columnar epithelium)
0003350 (epithelium of mucosa)
0003929 (gut epithelium)
0004808 (gastrointestinal system epithelium)
0001277 (intestinal epithelium)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0005409 (gastrointestinal system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000080 (human intestinal epithelial cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000223 (endodermal cell)