Personal tools

FF:10477-106I9: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(4 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005653
|DRA_sample_Accession=CAGE@SAMD00005653
|accession_numbers=CAGE;DRX007994;DRR008866;DRZ000291;DRZ001676
|accession_numbers=CAGE;DRX007994;DRR008866;DRZ000291;DRZ001676;DRZ011641;DRZ013026
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
Line 40: Line 40:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/rhabdomyosarcoma%2520cell%2520line%253aRMS-YM.CNhs11269.10477-106I9.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/rhabdomyosarcoma%2520cell%2520line%253aRMS-YM.CNhs11269.10477-106I9.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/rhabdomyosarcoma%2520cell%2520line%253aRMS-YM.CNhs11269.10477-106I9.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/rhabdomyosarcoma%2520cell%2520line%253aRMS-YM.CNhs11269.10477-106I9.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/rhabdomyosarcoma%2520cell%2520line%253aRMS-YM.CNhs11269.10477-106I9.hg38.nobarcode.ctss.bed.gz
|id=FF:10477-106I9
|id=FF:10477-106I9
|is_a=EFO:0002091;;FF:0000210;;FF:0102267
|is_a=EFO:0002091;;FF:0000210;;FF:0102267
Line 45: Line 50:
|library_id=CNhs11269
|library_id=CNhs11269
|library_id_phase_based=2:CNhs11269
|library_id_phase_based=2:CNhs11269
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10477
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10477
|name=rhabdomyosarcoma cell line:RMS-YM
|name=rhabdomyosarcoma cell line:RMS-YM
|namespace=FANTOM5
|namespace=FANTOM5
Line 52: Line 61:
|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang=en&db=human&roku_valid=1&rk[]=&order_key=score
|refex=http://refex.dbcls.jp/genelist.php?lang
|repeat_enrich_byfamily=0,0,0,0,0,0.378555268462101,0,-0.160318030086386,0,0.127939742149042,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0837073455258756,0,0.52572364096961,0,0.570967957872225,0,0.0316406635435373,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0.994175087746767,-0.138514453517023,0,0,0,0,0,0,0,0,0.111623478382175,0,0,0,0,0,0.0374244226261074,0,0.0326061985689897,0,0,0.131937027673558,0,0,0,0,0,0,0,0,0.129598559811595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00185188117968971,0.069615664822552,0,0,0.0711517329997697,0.0281307857924029,0.0911466558927155,0.069615664822552,0.034807832411276,0,-0.0980353512377064,-0.103669368389619,0,0,0,0,0,0,0.069615664822552,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0.069615664822552,0,0,0,-0.0777763431678603,0,0,0,0,0,0.0381090953351158
|repeat_enrich_byfamily=0,0,0,0,0,0.378555268462101,0,-0.160318030086386,0,0.127939742149042,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0837073455258756,0,0.52572364096961,0,0.570967957872225,0,0.0316406635435373,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0.994175087746767,-0.138514453517023,0,0,0,0,0,0,0,0,0.111623478382175,0,0,0,0,0,0.0374244226261074,0,0.0326061985689897,0,0,0.131937027673558,0,0,0,0,0,0,0,0,0.129598559811595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00185188117968971,0.069615664822552,0,0,0.0711517329997697,0.0281307857924029,0.0911466558927155,0.069615664822552,0.034807832411276,0,-0.0980353512377064,-0.103669368389619,0,0,0,0,0,0,0.069615664822552,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0.069615664822552,0,0,0,-0.0777763431678603,0,0,0,0,0,0.0381090953351158
|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0,0,0.310300174151125,0.069615664822552,0,0.069615664822552,0.069615664822552,0,0.069615664822552,0,0,0.368713221157599,0.0911466558927155,0.794484393989684,-0.143515142523472,0.034807832411276,0,0.301937024725422,0,0,0,0,0.069615664822552,0,0.129598559811595,0.129598559811595,0,-0.128119866952565,0,0.07918600822228,0.069615664822552,0,0,0,0,-0.305472230898407,0,-0.00137444021758714,0.113949050708063,0,0.069615664822552,0,0,-0.270240669334324,0,-0.120879483793741,0.146560486563237,0.945646907333123,0.0574759363370414,-0.055712496781182,0,0,0,-0.4333687469917,-0.580853049409435,0,0,0.0827405043251215,0.0981772317425595,0,0,0.792406868286913,0,0.223911910123599,-0.128034189342326,0,0.243832031053268,0,0,0,0,0,0,0,0,0,0,0,0.115390154110486,0.0187786451848763,0,0.069615664822552,0.489438035783885,0,-0.689058980216799,0,0,-0.303670491134015,-0.269631976484861,0.0989216801274815,0.883910489226366,0,-0.172791167198318,-0.0259947346262154,-0.00880363598021799,-0.280861969366494,-0.147401849371139,-0.120366054727295,0,0.0606661996462212,0.184315835053339,0.181038132780754,0.00185188117968971,0.0699811881060004,-0.252814656515434,-0.0454548245189101,0,0.129598559811595,0,-0.356103075083438,0,0,0.265315970101759,0.162381918377675,-0.0287143375880524,0.159146312336342,-0.0062617557881153,0.0090363774943667,0.453833222336493,-0.185759453906576,-0.0154878352591399,-0.0157825592852103,0.0481847789963267,0.069615664822552,0,0.073608669000137,0.223304513816412,-0.0381353837463427,0,0.0518248287667065,0.00127140374518386,0.218647030881505,0.0235606431414425,0.0561003279585457,0,0,0.0184341084987937,0,0,0,0,0,0.0218643330277835,-0.409893583218572,-0.163239896732993,0.0597259338880447,0.073767267006275,0.0309248743123055,-0.07852314836086,0,0.506004034116346,-0.132555096788253,0,0.017666369554889,0,0.0668257263394711,-0.207223833164228,-0.00501690141306854,-0.0133540932377462,0.0711517329997697,0.24812191799594,-0.0745783042494977,0.200581404058749,0.0506124184901093,0.153333589210178,-0.0881268324752877,0,0.181113664675274,-0.609882466798972,0,-0.20297238684262,0,-0.101469430989836,0,0.215713593810314,0,-0.151900068029178,-0.311153096586585,0.157921964789519,-0.389931625139643,0,-0.145729106911399,-0.409575669311874,0,-0.0490368341716507,0,0.805474109238106,0.385435207243048,0.03037009612511,0.128708427707416,-0.0130349683752031,0,-0.232828786211623,0,0,-0.190912323461372,-0.006195382877734,0.182293311785431,0.127275336331427,0.118863148424296,0.0467871021002907,0.0663222383504969,0,0,-0.645700337992725,0,0.182293311785431,-0.60592806381803,0.0362967452118448,0.527564308900632,-0.183710676664204,0.0121398608616718,0.227242864330402,0,0.069615664822552,-0.0479292061535808,0,0.535984633616862,0,0,0.158159269623952,0,0,0.477060457671076,0,-0.0401156034822018,0,0,0,0,0.0647992799057975,0,0,0.0957901376541883,0.34402724096421,0.129598559811595,0.104600917948352,0,0,0,0,0,-0.0518936523429076,0,0.069615664822552,0.213419341355259,0.0441652227238319,-0.0534017508538682,0.0647992799057975,0,0.034807832411276,0,0.0559535964365437,-0.0209432503092928,0,-0.0622470416750796,0.229280654886655,0,0,0.229280654886655,0.185536009200807,0,0,0.034807832411276,0,0.0718681027579308,-0.085538905426621,0,0,0,-0.27695440160179,0,0,0,0.000740394647386735,0.292489417404276,0,0,-0.161166771069144,0,-0.059595521775246,0.264185362317004,0,-0.209939624012619,-0.444417000627114,-0.0705041900927166,0,0.069615664822552,0.176178732193565,0,0,-0.0193978861372108,0,0.069615664822552,0.286316483129818,0,0,0,0,0.182293311785431,0,0.484546058780902,0,0,0.00358763009576715,0,0,0.069615664822552,0,0,0,0,0,-0.556590693134958,-0.0226083918359583,0,0,0,0.069615664822552,0,0,0,-0.0241060230789031,0.472011104342232,0,0,0,0,0,0.129598559811595,0,0,0.196122614581465,0,0,0,0,0,0.0326061985689897,0,0,0,0,-0.564807121153884,0,0,0.356440215307314,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255236182426653,0.127939742149042,0,0.069615664822552,0,0,0,0,0,-0.27483329820609,0,0,0,0,0.0157141861026177,0,0,0,0.562752169455551,0,-0.160318030086386,0.378555268462101,0,0.069615664822552,0,0,0,0.218762931991727,0,0,0,0,0,0,0,0,0,0,0,0.034807832411276,0,0,-0.0920703116903536,0,-0.0608905107599893,0.129598559811595,0,0,0.065977317052061,0,0,0,0,0,0,-0.031340424028527,0.0693646689237193,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.069615664822552,0,0,0,0,0,0,-5.02113938123385e-05,0,0,0,0,0,0,0,0.0316406635435373,0,0,-0.0920328098005262,0,0,0,0,0.069615664822552,0,-0.173336513213382,0.03819817353237,0.107207340638215,0,0,0.345767241863845,0.118498048449467,0,0,0.0381381997961014,0,-0.0667773874189013,0,0,0,0,0,0,0,0,0.271676998990018,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0837073455258756,0,0,0,0,0,0,0,0,0,0,0,0,0.034807832411276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.069615664822552,0.0647992799057975,0,0,0.129598559811595,0,0,0,0.230018913549221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,0.437916913638542,0,0.994175087746767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.069615664822552,0,0,0,0,0,0,0,0.069615664822552,0,0,0,0,0,0,0,0,0,0,0,-0.17614821206374,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0213935895834979,0,-0.0843766322300271,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.240203868364587,0,0,0,0,-0.0476371106609188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.183994943465953,0,0,-0.253229198817157,0,0,0,0,0,0.0145081658935904,0,0,0,0,0,0,0.0682783806614685,0,0,0,0,0,0,0,0,0,0,-0.0484300422256687,0,0,0,0,0,0,0,0,0,0,0.271676998990018,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0190565720011155,-0.0777763431678603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.034807832411276,0,0.142363467765985,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0614497335200395,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.034807832411276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14193591574445,0,0,0,0,0,0,0.034807832411276,0,0,0,0,0,0,0,0,0,0,0,-0.438103106964173,0,0,0,0,0,0,0,0,0.182293311785431,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.034807832411276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.192747187844922,0,0,0,0.52572364096961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.114640327443327,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.157236414286507,0,0,0,0,0,0,0,0.00690256281459395,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0110680488937142,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0317165860483832,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189277634231051,0,0,0,-0.010126333842426,0,0,0,0,0,0,0,0,0,0,0,0,0.034807832411276,0,0,0,0,0,0.131937027673558,0,0.0647992799057975,0,0,0,0,0,0,0,0,0,0,0,0,0,0.271676998990018,0,0,0,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.034807832411276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0194395219823153,0,0,0,0,0,0,0,0,0,0.034807832411276,0,0,0,-0.0499379825215864,0,0,0,0,0,0,0,0,0,0,-0.0412500915278073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.034807832411276,0,0.109508565402149,0,0.034807832411276,-0.0422874684771159,0,0,0,0,0,0,0,0,0.0381090953351158,0,0,0,0,0,0,0,0,0,0.069615664822552,0.142217064060899,0,0,0.113140324514442,0,0,0,0,0,0,0.069615664822552,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0984831731391347,0,0,0.236727658978813,0,0,-0.258476934965522,0,0,0,0,0,-0.105377230267747,0.171814544587627,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0516507163222762,0.069615664822552,0,0,0.0127567186599529,-0.269475635594569,0,-0.149555599463769,0,0,0.421820680630393,0,0.0647992799057975,0,0.48173138205875
|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0,0,0.310300174151125,0.069615664822552,0,0.069615664822552,0.069615664822552,0,0.069615664822552,0,0,0.368713221157599,0.0911466558927155,0.794484393989684,-0.143515142523472,0.034807832411276,0,0.301937024725422,0,0,0,0,0.069615664822552,0,0.129598559811595,0.129598559811595,0,-0.128119866952565,0,0.07918600822228,0.069615664822552,0,0,0,0,-0.305472230898407,0,-0.00137444021758714,0.113949050708063,0,0.069615664822552,0,0,-0.270240669334324,0,-0.120879483793741,0.146560486563237,0.945646907333123,0.0574759363370414,-0.055712496781182,0,0,0,-0.4333687469917,-0.580853049409435,0,0,0.0827405043251215,0.0981772317425595,0,0,0.792406868286913,0,0.223911910123599,-0.128034189342326,0,0.243832031053268,0,0,0,0,0,0,0,0,0,0,0,0.115390154110486,0.0187786451848763,0,0.069615664822552,0.489438035783885,0,-0.689058980216799,0,0,-0.303670491134015,-0.269631976484861,0.0989216801274815,0.883910489226366,0,-0.172791167198318,-0.0259947346262154,-0.00880363598021799,-0.280861969366494,-0.147401849371139,-0.120366054727295,0,0.0606661996462212,0.184315835053339,0.181038132780754,0.00185188117968971,0.0699811881060004,-0.252814656515434,-0.0454548245189101,0,0.129598559811595,0,-0.356103075083438,0,0,0.265315970101759,0.162381918377675,-0.0287143375880524,0.159146312336342,-0.0062617557881153,0.0090363774943667,0.453833222336493,-0.185759453906576,-0.0154878352591399,-0.0157825592852103,0.0481847789963267,0.069615664822552,0,0.073608669000137,0.223304513816412,-0.0381353837463427,0,0.0518248287667065,0.00127140374518386,0.218647030881505,0.0235606431414425,0.0561003279585457,0,0,0.0184341084987937,0,0,0,0,0,0.0218643330277835,-0.409893583218572,-0.163239896732993,0.0597259338880447,0.073767267006275,0.0309248743123055,-0.07852314836086,0,0.506004034116346,-0.132555096788253,0,0.017666369554889,0,0.0668257263394711,-0.207223833164228,-0.00501690141306854,-0.0133540932377462,0.0711517329997697,0.24812191799594,-0.0745783042494977,0.200581404058749,0.0506124184901093,0.153333589210178,-0.0881268324752877,0,0.181113664675274,-0.609882466798972,0,-0.20297238684262,0,-0.101469430989836,0,0.215713593810314,0,-0.151900068029178,-0.311153096586585,0.157921964789519,-0.389931625139643,0,-0.145729106911399,-0.409575669311874,0,-0.0490368341716507,0,0.805474109238106,0.385435207243048,0.03037009612511,0.128708427707416,-0.0130349683752031,0,-0.232828786211623,0,0,-0.190912323461372,-0.006195382877734,0.182293311785431,0.127275336331427,0.118863148424296,0.0467871021002907,0.0663222383504969,0,0,-0.645700337992725,0,0.182293311785431,-0.60592806381803,0.0362967452118448,0.527564308900632,-0.183710676664204,0.0121398608616718,0.227242864330402,0,0.069615664822552,-0.0479292061535808,0,0.535984633616862,0,0,0.158159269623952,0,0,0.477060457671076,0,-0.0401156034822018,0,0,0,0,0.0647992799057975,0,0,0.0957901376541883,0.34402724096421,0.129598559811595,0.104600917948352,0,0,0,0,0,-0.0518936523429076,0,0.069615664822552,0.213419341355259,0.0441652227238319,-0.0534017508538682,0.0647992799057975,0,0.034807832411276,0,0.0559535964365437,-0.0209432503092928,0,-0.0622470416750796,0.229280654886655,0,0,0.229280654886655,0.185536009200807,0,0,0.034807832411276,0,0.0718681027579308,-0.085538905426621,0,0,0,-0.27695440160179,0,0,0,0.000740394647386735,0.292489417404276,0,0,-0.161166771069144,0,-0.059595521775246,0.264185362317004,0,-0.209939624012619,-0.444417000627114,-0.0705041900927166,0,0.069615664822552,0.176178732193565,0,0,-0.0193978861372108,0,0.069615664822552,0.286316483129818,0,0,0,0,0.182293311785431,0,0.484546058780902,0,0,0.00358763009576715,0,0,0.069615664822552,0,0,0,0,0,-0.556590693134958,-0.0226083918359583,0,0,0,0.069615664822552,0,0,0,-0.0241060230789031,0.472011104342232,0,0,0,0,0,0.129598559811595,0,0,0.196122614581465,0,0,0,0,0,0.0326061985689897,0,0,0,0,-0.564807121153884,0,0,0.356440215307314,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255236182426653,0.127939742149042,0,0.069615664822552,0,0,0,0,0,-0.27483329820609,0,0,0,0,0.0157141861026177,0,0,0,0.562752169455551,0,-0.160318030086386,0.378555268462101,0,0.069615664822552,0,0,0,0.218762931991727,0,0,0,0,0,0,0,0,0,0,0,0.034807832411276,0,0,-0.0920703116903536,0,-0.0608905107599893,0.129598559811595,0,0,0.065977317052061,0,0,0,0,0,0,-0.031340424028527,0.0693646689237193,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.069615664822552,0,0,0,0,0,0,-5.02113938123385e-05,0,0,0,0,0,0,0,0.0316406635435373,0,0,-0.0920328098005262,0,0,0,0,0.069615664822552,0,-0.173336513213382,0.03819817353237,0.107207340638215,0,0,0.345767241863845,0.118498048449467,0,0,0.0381381997961014,0,-0.0667773874189013,0,0,0,0,0,0,0,0,0.271676998990018,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0837073455258756,0,0,0,0,0,0,0,0,0,0,0,0,0.034807832411276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.069615664822552,0.0647992799057975,0,0,0.129598559811595,0,0,0,0.230018913549221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,0.437916913638542,0,0.994175087746767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.069615664822552,0,0,0,0,0,0,0,0.069615664822552,0,0,0,0,0,0,0,0,0,0,0,-0.17614821206374,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0213935895834979,0,-0.0843766322300271,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.240203868364587,0,0,0,0,-0.0476371106609188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.183994943465953,0,0,-0.253229198817157,0,0,0,0,0,0.0145081658935904,0,0,0,0,0,0,0.0682783806614685,0,0,0,0,0,0,0,0,0,0,-0.0484300422256687,0,0,0,0,0,0,0,0,0,0,0.271676998990018,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0190565720011155,-0.0777763431678603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.034807832411276,0,0.142363467765985,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0614497335200395,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.034807832411276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14193591574445,0,0,0,0,0,0,0.034807832411276,0,0,0,0,0,0,0,0,0,0,0,-0.438103106964173,0,0,0,0,0,0,0,0,0.182293311785431,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.034807832411276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.192747187844922,0,0,0,0.52572364096961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.114640327443327,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.157236414286507,0,0,0,0,0,0,0,0.00690256281459395,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0110680488937142,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0317165860483832,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189277634231051,0,0,0,-0.010126333842426,0,0,0,0,0,0,0,0,0,0,0,0,0.034807832411276,0,0,0,0,0,0.131937027673558,0,0.0647992799057975,0,0,0,0,0,0,0,0,0,0,0,0,0,0.271676998990018,0,0,0,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.034807832411276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0194395219823153,0,0,0,0,0,0,0,0,0,0.034807832411276,0,0,0,-0.0499379825215864,0,0,0,0,0,0,0,0,0,0,-0.0412500915278073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.034807832411276,0,0.109508565402149,0,0.034807832411276,-0.0422874684771159,0,0,0,0,0,0,0,0,0.0381090953351158,0,0,0,0,0,0,0,0,0,0.069615664822552,0.142217064060899,0,0,0.113140324514442,0,0,0,0,0,0,0.069615664822552,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0984831731391347,0,0,0.236727658978813,0,0,-0.258476934965522,0,0,0,0,0,-0.105377230267747,0.171814544587627,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0516507163222762,0.069615664822552,0,0,0.0127567186599529,-0.269475635594569,0,-0.149555599463769,0,0,0.421820680630393,0,0.0647992799057975,0,0.48173138205875
Line 90: Line 99:
|top_motifs=SOX5:2.05097737452;E2F1..5:1.98226739798;POU2F1..3:1.93140335193;PITX1..3:1.91693690451;POU1F1:1.91491934959;ADNP_IRX_SIX_ZHX:1.8884588937;PATZ1:1.83803401409;NKX2-1,4:1.81193835295;PAX4:1.80199409813;NR6A1:1.70992312667;TFDP1:1.64524115238;GFI1:1.61212493544;MZF1:1.58319446248;CDC5L:1.54110208362;RORA:1.51150652771;CDX1,2,4:1.42605686536;RBPJ:1.41295074195;RXR{A,B,G}:1.38914901583;PBX1:1.32164423469;SOX17:1.29817503936;EN1,2:1.28818650457;RREB1:1.28231136039;FOXP1:1.27400626386;MYBL2:1.27381243136;HMGA1,2:1.2570777978;TOPORS:1.24571870939;PAX1,9:1.20826522097;POU6F1:1.20683043305;NFY{A,B,C}:1.1933821383;AIRE:1.19081353337;DBP:1.18531683682;IKZF2:1.17686159518;MYB:1.13256889581;NANOG:1.08619166482;ZNF143:1.0325796583;PAX8:1.02498271241;BPTF:1.02236974532;T:0.974693240395;BREu{core}:0.973038925362;NKX6-1,2:0.938963619011;LEF1_TCF7_TCF7L1,2:0.918841674613;ZNF384:0.907833237414;FOX{I1,J2}:0.904655450573;CUX2:0.883349182753;ZNF238:0.87755429008;PDX1:0.847808438188;CRX:0.834565551351;MEF2{A,B,C,D}:0.833864964108;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.808337535646;MED-1{core}:0.785026661506;EVI1:0.77910224165;TGIF1:0.7787422326;PAX3,7:0.769105197349;AHR_ARNT_ARNT2:0.759418526478;NRF1:0.752695420712;MAZ:0.737240128622;PRRX1,2:0.734929997528;FOXA2:0.725726282678;HOXA9_MEIS1:0.717908314027;ELK1,4_GABP{A,B1}:0.671777859757;FOXQ1:0.661372223265;STAT1,3:0.646856750653;PRDM1:0.640186577479;TEF:0.636983577009;YY1:0.605297858406;FOXL1:0.596947290996;NKX2-3_NKX2-5:0.591013806161;GTF2I:0.578548737232;HOX{A5,B5}:0.550531990196;GATA4:0.543021343728;TFAP4:0.542382120396;TEAD1:0.539291033946;EGR1..3:0.53588028052;ZBTB16:0.522189572867;IKZF1:0.478669138547;POU5F1:0.466728434581;POU3F1..4:0.462453858355;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.452284043966;FOXD3:0.442885315963;DMAP1_NCOR{1,2}_SMARC:0.437432679253;KLF4:0.415128819832;NFIL3:0.412508120826;ZIC1..3:0.366556126047;TLX1..3_NFIC{dimer}:0.365638293026;HAND1,2:0.351424960539;GFI1B:0.346734800892;OCT4_SOX2{dimer}:0.327890077684;NKX2-2,8:0.271123707101;NFIX:0.257539669936;GCM1,2:0.244940838927;HOX{A6,A7,B6,B7}:0.243760779963;TBP:0.238374644309;LHX3,4:0.232642351405;SOX{8,9,10}:0.221411649684;NHLH1,2:0.20890506137;STAT5{A,B}:0.189086076435;VSX1,2:0.162698030924;NR5A1,2:0.157664203439;HOX{A4,D4}:0.155314755597;ZNF148:0.137240018148;TAL1_TCF{3,4,12}:0.0940128620439;ATF4:0.0866189339175;SOX2:0.0801062655785;MYFfamily:0.0720061603605;FOXP3:0.059045551198;AR:0.047282781327;NKX3-2:0.0200511214394;GTF2A1,2:0.017936543554;GLI1..3:0.0107940514051;ZFP161:0.00591422068711;ONECUT1,2:-0.00646026868903;RFX1:-0.0172605039437;HIC1:-0.0400664591745;LMO2:-0.0412958391316;PAX6:-0.0513461892214;ESRRA:-0.0556047553543;SPZ1:-0.0626083898646;NR3C1:-0.0697116951089;GZF1:-0.0748417114633;bHLH_family:-0.0930447678275;TFAP2B:-0.101488774224;HNF4A_NR2F1,2:-0.129812283422;RFX2..5_RFXANK_RFXAP:-0.148251114013;GATA6:-0.162053090724;MYOD1:-0.169422849202;XCPE1{core}:-0.1759571939;HNF1A:-0.18337326776;NKX3-1:-0.212731085519;FOXM1:-0.221182910057;TP53:-0.240230978166;FOXN1:-0.252439229115;UFEwm:-0.25640018414;MTE{core}:-0.259003335933;CEBPA,B_DDIT3:-0.265310471207;TFAP2{A,C}:-0.325229396056;REST:-0.403844533701;ATF2:-0.430326821111;HSF1,2:-0.434796975549;RUNX1..3:-0.438117881871;JUN:-0.453048240585;ELF1,2,4:-0.45930268481;HLF:-0.461402998564;NANOG{mouse}:-0.466240863093;SNAI1..3:-0.470829555644;NFKB1_REL_RELA:-0.477315152968;NFE2:-0.48306848935;HES1:-0.4914862931;TLX2:-0.492093584296;SP1:-0.501280889127;ALX1:-0.501695036523;FOSL2:-0.521881249408;SPI1:-0.534066383635;IRF1,2:-0.550297226815;ATF6:-0.556918433632;SREBF1,2:-0.56375455522;ATF5_CREB3:-0.571985395555;PAX2:-0.572893496266;NFATC1..3:-0.576473129441;FOXO1,3,4:-0.582261241884;IRF7:-0.586818838478;HBP1_HMGB_SSRP1_UBTF:-0.594215253894;FOS_FOS{B,L1}_JUN{B,D}:-0.607188359925;SPIB:-0.629140829667;PAX5:-0.635515014143;NFE2L2:-0.681495783316;TBX4,5:-0.683212902125;SMAD1..7,9:-0.684375222135;BACH2:-0.691137410353;ZBTB6:-0.71998478729;ZEB1:-0.726297201178;FOX{D1,D2}:-0.760006209281;XBP1:-0.764440983962;MTF1:-0.774983251456;EBF1:-0.784238279002;STAT2,4,6:-0.785493086869;CREB1:-0.827633950937;ALX4:-0.844167318774;ETS1,2:-0.847790241218;FOX{F1,F2,J1}:-0.84980988192;ARID5B:-0.858491752825;SRF:-0.898300177686;NR1H4:-0.961320560377;ZNF423:-1.07149551404;EP300:-1.20441089674;PPARG:-1.21258022522;HMX1:-1.30844588295;TFCP2:-1.37917042374;MAFB:-1.56736791931;NFE2L1:-1.73658981201;HIF1A:-1.76388171627;RXRA_VDR{dimer}:-1.84355048326;ESR1:-1.86686912521
|top_motifs=SOX5:2.05097737452;E2F1..5:1.98226739798;POU2F1..3:1.93140335193;PITX1..3:1.91693690451;POU1F1:1.91491934959;ADNP_IRX_SIX_ZHX:1.8884588937;PATZ1:1.83803401409;NKX2-1,4:1.81193835295;PAX4:1.80199409813;NR6A1:1.70992312667;TFDP1:1.64524115238;GFI1:1.61212493544;MZF1:1.58319446248;CDC5L:1.54110208362;RORA:1.51150652771;CDX1,2,4:1.42605686536;RBPJ:1.41295074195;RXR{A,B,G}:1.38914901583;PBX1:1.32164423469;SOX17:1.29817503936;EN1,2:1.28818650457;RREB1:1.28231136039;FOXP1:1.27400626386;MYBL2:1.27381243136;HMGA1,2:1.2570777978;TOPORS:1.24571870939;PAX1,9:1.20826522097;POU6F1:1.20683043305;NFY{A,B,C}:1.1933821383;AIRE:1.19081353337;DBP:1.18531683682;IKZF2:1.17686159518;MYB:1.13256889581;NANOG:1.08619166482;ZNF143:1.0325796583;PAX8:1.02498271241;BPTF:1.02236974532;T:0.974693240395;BREu{core}:0.973038925362;NKX6-1,2:0.938963619011;LEF1_TCF7_TCF7L1,2:0.918841674613;ZNF384:0.907833237414;FOX{I1,J2}:0.904655450573;CUX2:0.883349182753;ZNF238:0.87755429008;PDX1:0.847808438188;CRX:0.834565551351;MEF2{A,B,C,D}:0.833864964108;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.808337535646;MED-1{core}:0.785026661506;EVI1:0.77910224165;TGIF1:0.7787422326;PAX3,7:0.769105197349;AHR_ARNT_ARNT2:0.759418526478;NRF1:0.752695420712;MAZ:0.737240128622;PRRX1,2:0.734929997528;FOXA2:0.725726282678;HOXA9_MEIS1:0.717908314027;ELK1,4_GABP{A,B1}:0.671777859757;FOXQ1:0.661372223265;STAT1,3:0.646856750653;PRDM1:0.640186577479;TEF:0.636983577009;YY1:0.605297858406;FOXL1:0.596947290996;NKX2-3_NKX2-5:0.591013806161;GTF2I:0.578548737232;HOX{A5,B5}:0.550531990196;GATA4:0.543021343728;TFAP4:0.542382120396;TEAD1:0.539291033946;EGR1..3:0.53588028052;ZBTB16:0.522189572867;IKZF1:0.478669138547;POU5F1:0.466728434581;POU3F1..4:0.462453858355;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.452284043966;FOXD3:0.442885315963;DMAP1_NCOR{1,2}_SMARC:0.437432679253;KLF4:0.415128819832;NFIL3:0.412508120826;ZIC1..3:0.366556126047;TLX1..3_NFIC{dimer}:0.365638293026;HAND1,2:0.351424960539;GFI1B:0.346734800892;OCT4_SOX2{dimer}:0.327890077684;NKX2-2,8:0.271123707101;NFIX:0.257539669936;GCM1,2:0.244940838927;HOX{A6,A7,B6,B7}:0.243760779963;TBP:0.238374644309;LHX3,4:0.232642351405;SOX{8,9,10}:0.221411649684;NHLH1,2:0.20890506137;STAT5{A,B}:0.189086076435;VSX1,2:0.162698030924;NR5A1,2:0.157664203439;HOX{A4,D4}:0.155314755597;ZNF148:0.137240018148;TAL1_TCF{3,4,12}:0.0940128620439;ATF4:0.0866189339175;SOX2:0.0801062655785;MYFfamily:0.0720061603605;FOXP3:0.059045551198;AR:0.047282781327;NKX3-2:0.0200511214394;GTF2A1,2:0.017936543554;GLI1..3:0.0107940514051;ZFP161:0.00591422068711;ONECUT1,2:-0.00646026868903;RFX1:-0.0172605039437;HIC1:-0.0400664591745;LMO2:-0.0412958391316;PAX6:-0.0513461892214;ESRRA:-0.0556047553543;SPZ1:-0.0626083898646;NR3C1:-0.0697116951089;GZF1:-0.0748417114633;bHLH_family:-0.0930447678275;TFAP2B:-0.101488774224;HNF4A_NR2F1,2:-0.129812283422;RFX2..5_RFXANK_RFXAP:-0.148251114013;GATA6:-0.162053090724;MYOD1:-0.169422849202;XCPE1{core}:-0.1759571939;HNF1A:-0.18337326776;NKX3-1:-0.212731085519;FOXM1:-0.221182910057;TP53:-0.240230978166;FOXN1:-0.252439229115;UFEwm:-0.25640018414;MTE{core}:-0.259003335933;CEBPA,B_DDIT3:-0.265310471207;TFAP2{A,C}:-0.325229396056;REST:-0.403844533701;ATF2:-0.430326821111;HSF1,2:-0.434796975549;RUNX1..3:-0.438117881871;JUN:-0.453048240585;ELF1,2,4:-0.45930268481;HLF:-0.461402998564;NANOG{mouse}:-0.466240863093;SNAI1..3:-0.470829555644;NFKB1_REL_RELA:-0.477315152968;NFE2:-0.48306848935;HES1:-0.4914862931;TLX2:-0.492093584296;SP1:-0.501280889127;ALX1:-0.501695036523;FOSL2:-0.521881249408;SPI1:-0.534066383635;IRF1,2:-0.550297226815;ATF6:-0.556918433632;SREBF1,2:-0.56375455522;ATF5_CREB3:-0.571985395555;PAX2:-0.572893496266;NFATC1..3:-0.576473129441;FOXO1,3,4:-0.582261241884;IRF7:-0.586818838478;HBP1_HMGB_SSRP1_UBTF:-0.594215253894;FOS_FOS{B,L1}_JUN{B,D}:-0.607188359925;SPIB:-0.629140829667;PAX5:-0.635515014143;NFE2L2:-0.681495783316;TBX4,5:-0.683212902125;SMAD1..7,9:-0.684375222135;BACH2:-0.691137410353;ZBTB6:-0.71998478729;ZEB1:-0.726297201178;FOX{D1,D2}:-0.760006209281;XBP1:-0.764440983962;MTF1:-0.774983251456;EBF1:-0.784238279002;STAT2,4,6:-0.785493086869;CREB1:-0.827633950937;ALX4:-0.844167318774;ETS1,2:-0.847790241218;FOX{F1,F2,J1}:-0.84980988192;ARID5B:-0.858491752825;SRF:-0.898300177686;NR1H4:-0.961320560377;ZNF423:-1.07149551404;EP300:-1.20441089674;PPARG:-1.21258022522;HMX1:-1.30844588295;TFCP2:-1.37917042374;MAFB:-1.56736791931;NFE2L1:-1.73658981201;HIF1A:-1.76388171627;RXRA_VDR{dimer}:-1.84355048326;ESR1:-1.86686912521
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10477-106I9;search_select_hide=table117:FF:10477-106I9
}}
}}

Latest revision as of 14:26, 3 June 2020

Name:rhabdomyosarcoma cell line:RMS-YM
Species:Human (Homo sapiens)
Library ID:CNhs11269
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueskeletal muscle
dev stageNA
sexmale
age2
cell typeskeletal muscle cell
cell lineRMS-YM
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005653
CollapseLibrary accession numbers

Library idMethodExp. accession idRun accession id
CNhs11269 CAGE DRX007994 DRR008866
CollapseAccession ID Hg19

Library idBAMCTSS
CNhs11269 DRZ000291 DRZ001676
CollapseAccession ID Hg38

Library idBAMCTSS
CNhs11269 DRZ011641 DRZ013026
Download raw sequence, BAM & CTSS
CollapseHg19
FastaBAMCTSS
downloaddownloaddonwload
CollapseHg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11269



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11269



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11269


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
1115 (sarcoma)

UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100400 (sarcoma cell line sample)
0102267 (rhabdomyosarcoma cell line sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=FF:10477-106I9&oldid=4576067"