FFCP PHASE1:Mm9::chr6:8898427..8898438,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=18231|HGNC=|MCL_coexpression_id=13|UniProt=|association_with_transcript=0bp_to_ENSMUST00000162942_5end|description=CAGE_peak_10_at_Nxph1_5end|id=chr6:8898427..8898438,+|ontology_enrichment_celltype=CL:0000117!1.43e-21!23;CL:0000337!1.43e-21!23;CL:0000540!5.68e-14!33;CL:0000047!5.68e-14!33;CL:0000031!5.68e-14!33;CL:0000404!5.68e-14!33;CL:0000393!1.05e-10!39;CL:0000211!1.05e-10!39;CL:0002319!4.58e-09!43;CL:0000221!1.05e-08!44;CL:0000133!1.05e-08!44;CL:0002609!4.21e-07!6;CL:0000055!7.02e-07!50|ontology_enrichment_celltype_v019_2=CL:0000117,3.31e-18,23;CL:0000337,3.31e-18,23;CL:0000540,5.53e-12,33;CL:0000047,5.53e-12,33;CL:0000031,5.53e-12,33;CL:0000404,5.53e-12,33;CL:0002612,1.88e-10,3;CL:0000120,2.17e-10,3;CL:0000393,8.74e-10,39;CL:0000211,8.74e-10,39;CL:0002319,1.16e-08,43;CL:0000221,2.06e-08,44;CL:0000133,2.06e-08,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002020!6.14e-30!34;UBERON:0001049!8.85e-26!52;UBERON:0005068!8.85e-26!52;UBERON:0006241!8.85e-26!52;UBERON:0007135!8.85e-26!52;UBERON:0002791!4.37e-24!29;UBERON:0003528!4.37e-24!29;UBERON:0001893!4.37e-24!29;UBERON:0001017!1.51e-23!73;UBERON:0005743!1.51e-23!73;UBERON:0000073!1.59e-22!75;UBERON:0001016!1.59e-22!75;UBERON:0000955!1.05e-21!50;UBERON:0006238!1.05e-21!50;UBERON:0002616!1.50e-20!49;UBERON:0003080!1.05e-19!40;UBERON:0002346!1.39e-19!71;UBERON:0003075!1.39e-19!71;UBERON:0007284!1.39e-19!71;UBERON:0000033!4.75e-19!63;UBERON:0003056!6.74e-19!49;UBERON:0002780!6.86e-19!39;UBERON:0001890!6.86e-19!39;UBERON:0006240!6.86e-19!39;UBERON:0000956!2.85e-16!21;UBERON:0001869!2.85e-16!21;UBERON:0000203!2.85e-16!21;UBERON:0004121!5.20e-16!102;UBERON:0000924!5.20e-16!102;UBERON:0006601!5.20e-16!102;UBERON:0002619!1.15e-12!17;UBERON:0007811!9.52e-11!86;UBERON:0002021!7.70e-10!10;UBERON:0000411!7.70e-10!10;UBERON:0001950!7.70e-10!10;UBERON:0002420!5.46e-09!8;UBERON:0007245!5.46e-09!8;UBERON:0010009!5.46e-09!8;UBERON:0010011!5.46e-09!8;UBERON:0000454!5.46e-09!8;UBERON:0000153!6.94e-09!94;UBERON:0002240!1.44e-07!6;UBERON:0005174!1.44e-07!6;UBERON:0001137!1.44e-07!6;UBERON:0001948!4.85e-07!5;UBERON:0002315!4.85e-07!5|ontology_enrichment_uberon_v019_2=UBERON:0002020,5.58e-38,34;UBERON:0003528,1.28e-28,29;UBERON:0002791,1.28e-28,29;UBERON:0001893,1.28e-28,29;UBERON:0001049,5.22e-26,52;UBERON:0005068,5.22e-26,52;UBERON:0006241,5.22e-26,52;UBERON:0007135,5.22e-26,52;UBERON:0001017,9.81e-26,73;UBERON:0001016,6.32e-25,75;UBERON:0000073,6.89e-25,54;UBERON:0002780,3.80e-23,39;UBERON:0001890,3.80e-23,39;UBERON:0006240,3.80e-23,39;UBERON:0002346,1.72e-22,64;UBERON:0003075,1.72e-22,64;UBERON:0007284,1.72e-22,64;UBERON:0003080,1.78e-22,40;UBERON:0000955,3.85e-21,47;UBERON:0006238,3.85e-21,47;UBERON:0002619,7.24e-21,17;UBERON:0004121,1.79e-20,95;UBERON:0000924,1.79e-20,95;UBERON:0006601,1.79e-20,95;UBERON:0003056,6.28e-20,49;UBERON:0002021,9.94e-20,10;UBERON:0000411,9.94e-20,10;UBERON:0001950,9.94e-20,10;UBERON:0000956,1.25e-19,21;UBERON:0001869,1.25e-19,21;UBERON:0000203,1.25e-19,21;UBERON:0010371,3.55e-19,73;UBERON:0002616,4.51e-19,46;UBERON:0010314,2.68e-14,92;UBERON:0001948,6.46e-11,5;UBERON:0002315,6.46e-11,5;UBERON:0002257,1.88e-10,3;UBERON:0000369,2.06e-10,5;UBERON:0002435,2.06e-10,5;UBERON:0000204,2.06e-10,5;UBERON:0010082,2.06e-10,5;UBERON:0002420,5.02e-10,8;UBERON:0007245,5.02e-10,8;UBERON:0010009,5.02e-10,8;UBERON:0010011,5.02e-10,8;UBERON:0000454,5.02e-10,8;UBERON:0000025,1.63e-09,114;UBERON:0002240,4.17e-09,6;UBERON:0005174,4.17e-09,6;UBERON:0001137,4.17e-09,6;UBERON:0004111,1.33e-08,122|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255129870453209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.23706337375356,1.05798195854407,1.90149421051854,0,0,0,0,0,0,0,0.622137673850866,1.21505344498522,0.630974884054146,2.57085885963423,0.662605622854841,0.979926393719632,1.15014565221884,0.919218786610021,0,0.255374676170375,0.614426133024974,2.2420668914133,1.64677758484337,0.52091337055676,0.279182999001381,2.8138130501584,0.45839474333043,1.17851434189467,2.27794689278565,2.23679334990361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.220841518460394,0,0,0.292780797011547,0.41889341362691,0,0,0,0,0.599162557619291,1.83000241127451,1.00523481690292,0.695297280769106,1.27857728665165,1.87009240103604,0.973447578406546,0,0,0,0.210441855886474,0,0,0,0,0.0680364991513279,0.12811372028485,0,1.55222022443409,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26173969138476,1.9551876352064,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.963303539926752,0,0,0,0,0,0,0,0,0,0,0.292255857911312,0,4.81981974632711,0,0,0,0.164970122972535,0,0,0,0,0,0,0,0.363533729477506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.370850604021019,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.6942555278512,1.38097570952153,4.01026859407578,4.1244763762485,0,1.5107877947794,2.02506750069542,1.35096360967266,0.453142408984205,1.03552062350364,0,0.399024873401031,0,0.729320151204882,0.209613162627982,0.551530525350042,0.666740183404846,0,0.320919209591815,0.252697211763798,0.50695859978048,0.377252682772152,0.468207537349412,0.832326981263301,0.516919220600519,0,0.347652977834566,0,0.824171801606613,0.441596760403192,0,0.354951612318675,0.476872379894642,0.581385666529314,0.188218760830661,0.423073039458382,0.548783918618318,0.526139422875686,0.679020569229309,0.561142271657738,0.355905054372522,0.29551344712669,0,0.619747364743864,0.192906610981141,0.749431733813838,0.467863216890817,0.214871054048298,0.382576664137687,0,0|short_description=p10@Nxph1}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=18231 | |||
|HGNC= | |||
|MCL_coexpression_id=13 | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENSMUST00000162942_5end | |||
|cluster_id=chr6:8898427..8898438,+ | |||
|description=CAGE_peak_10_at_Nxph1_5end | |||
|id=chr6:8898427..8898438,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.43e-21!23;CL:0000337!1.43e-21!23;CL:0000540!5.68e-14!33;CL:0000047!5.68e-14!33;CL:0000031!5.68e-14!33;CL:0000404!5.68e-14!33;CL:0000393!1.05e-10!39;CL:0000211!1.05e-10!39;CL:0002319!4.58e-09!43;CL:0000221!1.05e-08!44;CL:0000133!1.05e-08!44;CL:0002609!4.21e-07!6;CL:0000055!7.02e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,3.31e-18,23;CL:0000337,3.31e-18,23;CL:0000540,5.53e-12,33;CL:0000047,5.53e-12,33;CL:0000031,5.53e-12,33;CL:0000404,5.53e-12,33;CL:0002612,1.88e-10,3;CL:0000120,2.17e-10,3;CL:0000393,8.74e-10,39;CL:0000211,8.74e-10,39;CL:0002319,1.16e-08,43;CL:0000221,2.06e-08,44;CL:0000133,2.06e-08,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002020!6.14e-30!34;UBERON:0001049!8.85e-26!52;UBERON:0005068!8.85e-26!52;UBERON:0006241!8.85e-26!52;UBERON:0007135!8.85e-26!52;UBERON:0002791!4.37e-24!29;UBERON:0003528!4.37e-24!29;UBERON:0001893!4.37e-24!29;UBERON:0001017!1.51e-23!73;UBERON:0005743!1.51e-23!73;UBERON:0000073!1.59e-22!75;UBERON:0001016!1.59e-22!75;UBERON:0000955!1.05e-21!50;UBERON:0006238!1.05e-21!50;UBERON:0002616!1.50e-20!49;UBERON:0003080!1.05e-19!40;UBERON:0002346!1.39e-19!71;UBERON:0003075!1.39e-19!71;UBERON:0007284!1.39e-19!71;UBERON:0000033!4.75e-19!63;UBERON:0003056!6.74e-19!49;UBERON:0002780!6.86e-19!39;UBERON:0001890!6.86e-19!39;UBERON:0006240!6.86e-19!39;UBERON:0000956!2.85e-16!21;UBERON:0001869!2.85e-16!21;UBERON:0000203!2.85e-16!21;UBERON:0004121!5.20e-16!102;UBERON:0000924!5.20e-16!102;UBERON:0006601!5.20e-16!102;UBERON:0002619!1.15e-12!17;UBERON:0007811!9.52e-11!86;UBERON:0002021!7.70e-10!10;UBERON:0000411!7.70e-10!10;UBERON:0001950!7.70e-10!10;UBERON:0002420!5.46e-09!8;UBERON:0007245!5.46e-09!8;UBERON:0010009!5.46e-09!8;UBERON:0010011!5.46e-09!8;UBERON:0000454!5.46e-09!8;UBERON:0000153!6.94e-09!94;UBERON:0002240!1.44e-07!6;UBERON:0005174!1.44e-07!6;UBERON:0001137!1.44e-07!6;UBERON:0001948!4.85e-07!5;UBERON:0002315!4.85e-07!5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002020,5.58e-38,34;UBERON:0003528,1.28e-28,29;UBERON:0002791,1.28e-28,29;UBERON:0001893,1.28e-28,29;UBERON:0001049,5.22e-26,52;UBERON:0005068,5.22e-26,52;UBERON:0006241,5.22e-26,52;UBERON:0007135,5.22e-26,52;UBERON:0001017,9.81e-26,73;UBERON:0001016,6.32e-25,75;UBERON:0000073,6.89e-25,54;UBERON:0002780,3.80e-23,39;UBERON:0001890,3.80e-23,39;UBERON:0006240,3.80e-23,39;UBERON:0002346,1.72e-22,64;UBERON:0003075,1.72e-22,64;UBERON:0007284,1.72e-22,64;UBERON:0003080,1.78e-22,40;UBERON:0000955,3.85e-21,47;UBERON:0006238,3.85e-21,47;UBERON:0002619,7.24e-21,17;UBERON:0004121,1.79e-20,95;UBERON:0000924,1.79e-20,95;UBERON:0006601,1.79e-20,95;UBERON:0003056,6.28e-20,49;UBERON:0002021,9.94e-20,10;UBERON:0000411,9.94e-20,10;UBERON:0001950,9.94e-20,10;UBERON:0000956,1.25e-19,21;UBERON:0001869,1.25e-19,21;UBERON:0000203,1.25e-19,21;UBERON:0010371,3.55e-19,73;UBERON:0002616,4.51e-19,46;UBERON:0010314,2.68e-14,92;UBERON:0001948,6.46e-11,5;UBERON:0002315,6.46e-11,5;UBERON:0002257,1.88e-10,3;UBERON:0000369,2.06e-10,5;UBERON:0002435,2.06e-10,5;UBERON:0000204,2.06e-10,5;UBERON:0010082,2.06e-10,5;UBERON:0002420,5.02e-10,8;UBERON:0007245,5.02e-10,8;UBERON:0010009,5.02e-10,8;UBERON:0010011,5.02e-10,8;UBERON:0000454,5.02e-10,8;UBERON:0000025,1.63e-09,114;UBERON:0002240,4.17e-09,6;UBERON:0005174,4.17e-09,6;UBERON:0001137,4.17e-09,6;UBERON:0004111,1.33e-08,122 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255129870453209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.23706337375356,1.05798195854407,1.90149421051854,0,0,0,0,0,0,0,0.622137673850866,1.21505344498522,0.630974884054146,2.57085885963423,0.662605622854841,0.979926393719632,1.15014565221884,0.919218786610021,0,0.255374676170375,0.614426133024974,2.2420668914133,1.64677758484337,0.52091337055676,0.279182999001381,2.8138130501584,0.45839474333043,1.17851434189467,2.27794689278565,2.23679334990361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.220841518460394,0,0,0.292780797011547,0.41889341362691,0,0,0,0,0.599162557619291,1.83000241127451,1.00523481690292,0.695297280769106,1.27857728665165,1.87009240103604,0.973447578406546,0,0,0,0.210441855886474,0,0,0,0,0.0680364991513279,0.12811372028485,0,1.55222022443409,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26173969138476,1.9551876352064,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.963303539926752,0,0,0,0,0,0,0,0,0,0,0.292255857911312,0,4.81981974632711,0,0,0,0.164970122972535,0,0,0,0,0,0,0,0.363533729477506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.370850604021019,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.6942555278512,1.38097570952153,4.01026859407578,4.1244763762485,0,1.5107877947794,2.02506750069542,1.35096360967266,0.453142408984205,1.03552062350364,0,0.399024873401031,0,0.729320151204882,0.209613162627982,0.551530525350042,0.666740183404846,0,0.320919209591815,0.252697211763798,0.50695859978048,0.377252682772152,0.468207537349412,0.832326981263301,0.516919220600519,0,0.347652977834566,0,0.824171801606613,0.441596760403192,0,0.354951612318675,0.476872379894642,0.581385666529314,0.188218760830661,0.423073039458382,0.548783918618318,0.526139422875686,0.679020569229309,0.561142271657738,0.355905054372522,0.29551344712669,0,0.619747364743864,0.192906610981141,0.749431733813838,0.467863216890817,0.214871054048298,0.382576664137687,0,0 | |||
|short_description=p10@Nxph1 | |||
}} |
Latest revision as of 21:33, 1 October 2015
Short description: | p10@Nxph1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_10_at_Nxph1_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | 0bp_to_ENSMUST00000162942_5end |
EntrezGene: | Nxph1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 3.31e-18 | 23 |
neuroblast (sensu Vertebrata) | 3.31e-18 | 23 |
neuron | 5.53e-12 | 33 |
neuronal stem cell | 5.53e-12 | 33 |
neuroblast | 5.53e-12 | 33 |
electrically signaling cell | 5.53e-12 | 33 |
neuron of the ventral spinal cord | 1.88e-10 | 3 |
granule cell | 2.17e-10 | 3 |
electrically responsive cell | 8.74e-10 | 39 |
electrically active cell | 8.74e-10 | 39 |
neural cell | 1.16e-08 | 43 |
ectodermal cell | 2.06e-08 | 44 |
neurectodermal cell | 2.06e-08 | 44 |