FFCP PHASE1:Mm9::chr11:54336453..54336478,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 mm9::chr11:54336453..54336478,+ to FFCP PHASE1:Mm9::chr11:54336453..54336478,+: NSchange) |
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(7 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=192786 | |EntrezGene=192786 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=7 | |||
|TSSclassifier=NA | |||
|UniProt=B2RUJ6,Q5NCJ5 | |UniProt=B2RUJ6,Q5NCJ5 | ||
|association_with_transcript=5bp_to_ENSMUST00000041060,ENSMUST00000050145_5end | |||
|cluster_id=chr11:54336453..54336478,+ | |||
|description=CAGE_peak_2_at_Rapgef6_5end | |||
|id=chr11:54336453..54336478,+ | |||
|ontology_enrichment_celltype=CL:0000988!1.67e-09!32;CL:0002032!1.67e-09!32;CL:0000037!1.67e-09!32;CL:0000566!1.67e-09!32;CL:0000837!1.67e-09!32;CL:0000838!9.12e-09!12;CL:0000542!2.83e-08!13;CL:0000051!2.83e-08!13;CL:0000084!4.38e-08!11;CL:0000827!4.38e-08!11;CL:0000791!3.01e-07!9;CL:0000789!3.01e-07!9;CL:0002420!3.01e-07!9;CL:0002419!3.01e-07!9;CL:0000790!3.01e-07!9;CL:0002031!8.88e-07!25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,2.73e-11,32;CL:0002032,2.73e-11,32;CL:0000037,2.73e-11,32;CL:0000837,2.73e-11,32;CL:0000838,3.20e-09,12;CL:0000542,1.06e-08,13;CL:0000051,1.06e-08,13;CL:0000084,1.69e-08,11;CL:0000827,1.69e-08,11;CL:0002031,2.65e-08,25;CL:0000791,1.31e-07,9;CL:0000789,1.31e-07,9;CL:0002420,1.31e-07,9;CL:0002419,1.31e-07,9;CL:0000790,1.31e-07,9;CL:0002320,3.84e-07,46;CL:0000134,3.84e-07,46;CL:0000624,5.86e-07,8 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005911!1.67e-12!69;UBERON:0000490!5.31e-11!66;UBERON:0000926!9.61e-11!193;UBERON:0004120!9.61e-11!193;UBERON:0006603!9.61e-11!193;UBERON:0002405!1.45e-10!70;UBERON:0005057!2.03e-10!51;UBERON:0003929!3.13e-10!55;UBERON:0001007!7.91e-09!128;UBERON:0001555!7.91e-09!128;UBERON:0007026!7.91e-09!128;UBERON:0004119!8.89e-09!130;UBERON:0000925!8.89e-09!130;UBERON:0006595!8.89e-09!130;UBERON:0003081!1.94e-08!88;UBERON:0004921!2.40e-08!126;UBERON:0004185!2.40e-08!126;UBERON:0001041!5.44e-08!92;UBERON:0004177!9.63e-08!29;UBERON:0002193!1.65e-07!48;UBERON:0003104!2.44e-07!131;UBERON:0009142!2.44e-07!131;UBERON:0000065!3.47e-07!41;UBERON:0000077!3.67e-07!97;UBERON:0001048!8.87e-07!147;UBERON:0001004!9.22e-07!42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005911,1.73e-12,69;UBERON:0000490,4.07e-11,66;UBERON:0003929,3.15e-10,55;UBERON:0001041,7.87e-10,80;UBERON:0003081,1.33e-09,87;UBERON:0001007,1.90e-09,116;UBERON:0001555,1.90e-09,116;UBERON:0007026,1.90e-09,116;UBERON:0002193,2.82e-09,48;UBERON:0002405,2.82e-09,48;UBERON:0004119,3.10e-09,118;UBERON:0000925,3.10e-09,118;UBERON:0006595,3.10e-09,118;UBERON:0004921,6.26e-09,114;UBERON:0000926,9.83e-09,120;UBERON:0004120,9.83e-09,120;UBERON:0006603,9.83e-09,120;UBERON:0002390,3.48e-08,45;UBERON:0003061,3.48e-08,45;UBERON:0004177,3.82e-08,29;UBERON:0005057,3.82e-08,29;UBERON:0001048,4.62e-08,134;UBERON:0000065,3.18e-07,41;UBERON:0002384,3.84e-07,46 | |||
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| ||
|short_description=p2@Rapgef6 | |||
}} | }} |
Latest revision as of 17:02, 1 October 2015
Short description: | p2@Rapgef6 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Rapgef6_5end |
Coexpression cluster: | MCL_coexpression_mm9:7 |
Association with transcript: | 5bp_to_ENSMUST00000041060, ENSMUST00000050145_5end |
EntrezGene: | Rapgef6 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 2.73e-11 | 32 |
hematopoietic oligopotent progenitor cell | 2.73e-11 | 32 |
hematopoietic stem cell | 2.73e-11 | 32 |
hematopoietic multipotent progenitor cell | 2.73e-11 | 32 |
lymphoid lineage restricted progenitor cell | 3.20e-09 | 12 |
lymphocyte | 1.06e-08 | 13 |
common lymphoid progenitor | 1.06e-08 | 13 |
T cell | 1.69e-08 | 11 |
pro-T cell | 1.69e-08 | 11 |
hematopoietic lineage restricted progenitor cell | 2.65e-08 | 25 |
mature alpha-beta T cell | 1.31e-07 | 9 |
alpha-beta T cell | 1.31e-07 | 9 |
immature T cell | 1.31e-07 | 9 |
mature T cell | 1.31e-07 | 9 |
immature alpha-beta T cell | 1.31e-07 | 9 |
connective tissue cell | 3.84e-07 | 46 |
mesenchymal cell | 3.84e-07 | 46 |
CD4-positive, alpha-beta T cell | 5.86e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
endo-epithelium | 1.73e-12 | 69 |
unilaminar epithelium | 4.07e-11 | 66 |
gut epithelium | 3.15e-10 | 55 |
foregut | 7.87e-10 | 80 |
lateral plate mesoderm | 1.33e-09 | 87 |
digestive system | 1.90e-09 | 116 |
digestive tract | 1.90e-09 | 116 |
primitive gut | 1.90e-09 | 116 |
hemolymphoid system | 2.82e-09 | 48 |
immune system | 2.82e-09 | 48 |
endoderm-derived structure | 3.10e-09 | 118 |
endoderm | 3.10e-09 | 118 |
presumptive endoderm | 3.10e-09 | 118 |
subdivision of digestive tract | 6.26e-09 | 114 |
mesoderm | 9.83e-09 | 120 |
mesoderm-derived structure | 9.83e-09 | 120 |
presumptive mesoderm | 9.83e-09 | 120 |
hematopoietic system | 3.48e-08 | 45 |
blood island | 3.48e-08 | 45 |
hemopoietic organ | 3.82e-08 | 29 |
immune organ | 3.82e-08 | 29 |
primordium | 4.62e-08 | 134 |
respiratory tract | 3.18e-07 | 41 |
connective tissue | 3.84e-07 | 46 |