FFCP PHASE1:Mm9::chr8:108804960..108804973,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=58994 | |EntrezGene=58994 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=3650 | |||
|TSSclassifier=NA | |||
|UniProt=Q9JJY3 | |UniProt=Q9JJY3 | ||
|association_with_transcript=-82bp_to_uc009nfx.1_5end | |association_with_transcript=-82bp_to_uc009nfx.1_5end | ||
|cluster_id=chr8:108804960..108804973,- | |||
|description=CAGE_peak_7_at_Smpd3_5end | |description=CAGE_peak_7_at_Smpd3_5end | ||
|id=chr8:108804960..108804973,- | |id=chr8:108804960..108804973,- | ||
|ontology_enrichment_celltype=CL:0002563!3.92e-08!9;CL:0002251!3.92e-08!9;CL:0000066!8.91e-08!25 | |ontology_enrichment_celltype=CL:0002563!3.92e-08!9;CL:0002251!3.92e-08!9;CL:0000066!8.91e-08!25 | ||
|ontology_enrichment_celltype_v019_2=CL:0002563,2.52e-17,9;CL:0002251,2.52e-17,9;CL:0000239,2.88e-10,6;CL:0000677,2.88e-10,6;CL:0000584,2.88e-10,6;CL:0000066,3.86e-10,25;CL:0002076,7.86e-10,15;CL:0002250,6.88e-09,3;CL:0000075,9.46e-09,7;CL:0000682,7.16e-08,3;CL:0000223,4.99e-07,20 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005409!4.18e-18!59;UBERON:0000160!5.46e-15!43;UBERON:0000344!3.42e-14!15;UBERON:0004119!1.94e-13!130;UBERON:0000925!1.94e-13!130;UBERON:0006595!1.94e-13!130;UBERON:0001007!1.24e-12!128;UBERON:0001555!1.24e-12!128;UBERON:0007026!1.24e-12!128;UBERON:0001242!4.36e-12!13;UBERON:0000060!4.36e-12!13;UBERON:0001262!4.36e-12!13;UBERON:0004786!4.36e-12!13;UBERON:0004921!2.47e-11!126;UBERON:0004185!2.47e-11!126;UBERON:0004923!2.07e-10!24;UBERON:0003350!3.92e-08!9;UBERON:0004808!3.92e-08!9;UBERON:0001277!3.92e-08!9 | |ontology_enrichment_uberon=UBERON:0005409!4.18e-18!59;UBERON:0000160!5.46e-15!43;UBERON:0000344!3.42e-14!15;UBERON:0004119!1.94e-13!130;UBERON:0000925!1.94e-13!130;UBERON:0006595!1.94e-13!130;UBERON:0001007!1.24e-12!128;UBERON:0001555!1.24e-12!128;UBERON:0007026!1.24e-12!128;UBERON:0001242!4.36e-12!13;UBERON:0000060!4.36e-12!13;UBERON:0001262!4.36e-12!13;UBERON:0004786!4.36e-12!13;UBERON:0004921!2.47e-11!126;UBERON:0004185!2.47e-11!126;UBERON:0004923!2.07e-10!24;UBERON:0003350!3.92e-08!9;UBERON:0004808!3.92e-08!9;UBERON:0001277!3.92e-08!9 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0005409,1.60e-41,47;UBERON:0000160,3.31e-37,31;UBERON:0000344,2.71e-31,15;UBERON:0001242,1.98e-26,13;UBERON:0001262,1.98e-26,13;UBERON:0004786,1.98e-26,13;UBERON:0004923,2.72e-21,24;UBERON:0003350,2.52e-17,9;UBERON:0004808,2.52e-17,9;UBERON:0001277,2.52e-17,9;UBERON:0001007,1.41e-15,116;UBERON:0001555,1.41e-15,116;UBERON:0007026,1.41e-15,116;UBERON:0004119,3.38e-15,118;UBERON:0000925,3.38e-15,118;UBERON:0006595,3.38e-15,118;UBERON:0000485,6.43e-14,11;UBERON:0004921,2.67e-13,114;UBERON:0000331,6.48e-09,3;UBERON:0002116,6.48e-09,3;UBERON:0001204,6.48e-09,3;UBERON:0001168,6.48e-09,3;UBERON:0002108,9.28e-07,4;UBERON:0000945,9.68e-07,16;UBERON:0010039,9.68e-07,16 | |||
|phase1_expression=0,1.74487703819681,2.72999543633722,1.51232105653415,0,4.36486106970913,3.27057696833736,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,2.87986361028132,4.5881856213434,1.72269589234506,1.7230479846363,3.66301095566011,2.85035129184561,4.03248207615889,6.65191531965914,0,0,0,3.75507105676657,5.15327400611326,3.06254034393554,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.338844532069132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289864488701678,0,0,0,0.649776417447669,0.896053774194671,0.140444420131752,0.170430322578058,0,0,0,0,0,0,0.649473123033642,0.253359865475099,0,0.34255163915718,0,0,0,0,0,0,0,0,3.46072954828123,0,0,0,0.441683036920787,0.969750506270444,1.86391761218122,0,0,2.81002760729451,0,0,0,0,0,0,0,0,0,0,0,0.124406970610093,0,0,0,0.229902104433473,0,0,0,0,0,0,0,0,0.175951124163949,0.219195732427575,0,0,0,0,0,0,0,0,0,0.180062061461015,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32167513193519,3.43785736662608,0,0,1.41754207454303,1.00841762311671,0.444756087689741,0.570676878337677,0.474529061544512,1.64698954724011,1.50801125280162,1.79060824837036,1.16978452271472,0.898819408654221,3.8904848977445,1.7922714592893,0,0,0,0,0,0,0,0,0,0,0.296452627087149,0,0,0.224862112384854,0,0.241177159752417,0.25462585178142,0,0.810676133875177,0.549122826376163,0,0,0.624075346229121,0.505157755894224,0.717589654087649,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141940085208269,0,0,0.494910368917606,0,0,0,0,0,0,0.258428293168221,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23467170806371,0.21183207086382,0,0,0.161464426695906,0,0,0,0.874442509889552,0,0,0,0,0,0,0,0,0,0,1.90934123603023,0,0.406638934253697,1.51207477150522,3.13632444021703,3.49380101993884,2.83215127408124,3.2234847732881,0.26175594198403,2.07383957266869,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.100966449948148,0,0.100826185136841,0.0974578807397524,0.0962118416403295,0,0,0,0,0,0,0.187682475451182,2.56412273974171,0.428736758158132,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170733605754134,0,0,0,0.222246727801615,0,0,0.252697211763798,0,0,0,0.0640251524048693,0.17230640686684,0,0,0.38581844092741,0,0.294397840268795,0,0.177475806159338,0,0,0,0.25384382367503,0.182927972872773,0.263069711437843,0,0.561142271657738,0.118635018124174,0.29551344712669,0,0.464810523557898,0.385813221962283,0.249810577937946,0.467863216890817,0.214871054048298,0,0.220591419119515,0.463735671240843 | |phase1_expression=0,1.74487703819681,2.72999543633722,1.51232105653415,0,4.36486106970913,3.27057696833736,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,2.87986361028132,4.5881856213434,1.72269589234506,1.7230479846363,3.66301095566011,2.85035129184561,4.03248207615889,6.65191531965914,0,0,0,3.75507105676657,5.15327400611326,3.06254034393554,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.338844532069132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289864488701678,0,0,0,0.649776417447669,0.896053774194671,0.140444420131752,0.170430322578058,0,0,0,0,0,0,0.649473123033642,0.253359865475099,0,0.34255163915718,0,0,0,0,0,0,0,0,3.46072954828123,0,0,0,0.441683036920787,0.969750506270444,1.86391761218122,0,0,2.81002760729451,0,0,0,0,0,0,0,0,0,0,0,0.124406970610093,0,0,0,0.229902104433473,0,0,0,0,0,0,0,0,0.175951124163949,0.219195732427575,0,0,0,0,0,0,0,0,0,0.180062061461015,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32167513193519,3.43785736662608,0,0,1.41754207454303,1.00841762311671,0.444756087689741,0.570676878337677,0.474529061544512,1.64698954724011,1.50801125280162,1.79060824837036,1.16978452271472,0.898819408654221,3.8904848977445,1.7922714592893,0,0,0,0,0,0,0,0,0,0,0.296452627087149,0,0,0.224862112384854,0,0.241177159752417,0.25462585178142,0,0.810676133875177,0.549122826376163,0,0,0.624075346229121,0.505157755894224,0.717589654087649,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141940085208269,0,0,0.494910368917606,0,0,0,0,0,0,0.258428293168221,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23467170806371,0.21183207086382,0,0,0.161464426695906,0,0,0,0.874442509889552,0,0,0,0,0,0,0,0,0,0,1.90934123603023,0,0.406638934253697,1.51207477150522,3.13632444021703,3.49380101993884,2.83215127408124,3.2234847732881,0.26175594198403,2.07383957266869,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.100966449948148,0,0.100826185136841,0.0974578807397524,0.0962118416403295,0,0,0,0,0,0,0.187682475451182,2.56412273974171,0.428736758158132,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170733605754134,0,0,0,0.222246727801615,0,0,0.252697211763798,0,0,0,0.0640251524048693,0.17230640686684,0,0,0.38581844092741,0,0.294397840268795,0,0.177475806159338,0,0,0,0.25384382367503,0.182927972872773,0.263069711437843,0,0.561142271657738,0.118635018124174,0.29551344712669,0,0.464810523557898,0.385813221962283,0.249810577937946,0.467863216890817,0.214871054048298,0,0.220591419119515,0.463735671240843 | ||
|short_description=p7@Smpd3 | |short_description=p7@Smpd3 | ||
}} | }} |
Latest revision as of 08:39, 27 September 2015
Short description: | p7@Smpd3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_7_at_Smpd3_5end |
Coexpression cluster: | MCL_coexpression_mm9:3650 |
Association with transcript: | -82bp_to_uc009nfx.1_5end |
EntrezGene: | Smpd3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 2.52e-17 | 9 |
epithelial cell of alimentary canal | 2.52e-17 | 9 |
brush border epithelial cell | 2.88e-10 | 6 |
gut absorptive cell | 2.88e-10 | 6 |
enterocyte | 2.88e-10 | 6 |
epithelial cell | 3.86e-10 | 25 |
endo-epithelial cell | 7.86e-10 | 15 |
intestinal crypt stem cell | 6.88e-09 | 3 |
columnar/cuboidal epithelial cell | 9.46e-09 | 7 |
M cell of gut | 7.16e-08 | 3 |
endodermal cell | 4.99e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
gastrointestinal system | 1.60e-41 | 47 |
intestine | 3.31e-37 | 31 |
mucosa | 2.71e-31 | 15 |
intestinal mucosa | 1.98e-26 | 13 |
wall of intestine | 1.98e-26 | 13 |
gastrointestinal system mucosa | 1.98e-26 | 13 |
organ component layer | 2.72e-21 | 24 |
epithelium of mucosa | 2.52e-17 | 9 |
gastrointestinal system epithelium | 2.52e-17 | 9 |
intestinal epithelium | 2.52e-17 | 9 |
digestive system | 1.41e-15 | 116 |
digestive tract | 1.41e-15 | 116 |
primitive gut | 1.41e-15 | 116 |
endoderm-derived structure | 3.38e-15 | 118 |
endoderm | 3.38e-15 | 118 |
presumptive endoderm | 3.38e-15 | 118 |
simple columnar epithelium | 6.43e-14 | 11 |
subdivision of digestive tract | 2.67e-13 | 114 |
ileal mucosa | 6.48e-09 | 3 |
ileum | 6.48e-09 | 3 |
mucosa of small intestine | 6.48e-09 | 3 |
wall of small intestine | 6.48e-09 | 3 |
small intestine | 9.28e-07 | 4 |
stomach | 9.68e-07 | 16 |
food storage organ | 9.68e-07 | 16 |