FFCP PHASE1:Mm9::chr9:99776617..99776631,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 mm9::chr9:99776617..99776631,- to FFCP PHASE1:Mm9::chr9:99776617..99776631,-: NSchange) |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=20669 | |EntrezGene=20669 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=224 | |||
|TSSclassifier=NA | |||
|UniProt=Q04892,Q3UUP3,Q497H4,Q7TNS9 | |UniProt=Q04892,Q3UUP3,Q497H4,Q7TNS9 | ||
|association_with_transcript=-28bp_to_NM_011440,uc012gzb.1_5end | |||
|cluster_id=chr9:99776617..99776631,- | |||
|description=CAGE_peak_2_at_Sox14_5end | |||
|id=chr9:99776617..99776631,- | |||
|ontology_enrichment_celltype=CL:0000117!3.35e-13!23;CL:0000337!3.35e-13!23;CL:0000540!6.45e-08!33;CL:0000047!6.45e-08!33;CL:0000031!6.45e-08!33;CL:0000404!6.45e-08!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.08e-20,23;CL:0000337,2.08e-20,23;CL:0000120,1.28e-16,3;CL:0002613,1.63e-15,3;CL:0000540,8.29e-14,33;CL:0000047,8.29e-14,33;CL:0000031,8.29e-14,33;CL:0000404,8.29e-14,33;CL:0000393,1.82e-11,39;CL:0000211,1.82e-11,39;CL:0002319,2.88e-10,43;CL:0000221,5.31e-10,44;CL:0000133,5.31e-10,44;CL:0002612,1.53e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001894!2.40e-09!10;UBERON:0006222!2.40e-09!10;UBERON:0001017!2.10e-08!73;UBERON:0005743!2.10e-08!73;UBERON:0000073!5.41e-08!75;UBERON:0001016!5.41e-08!75;UBERON:0001049!1.86e-07!52;UBERON:0005068!1.86e-07!52;UBERON:0006241!1.86e-07!52;UBERON:0007135!1.86e-07!52;UBERON:0000007!3.47e-07!8;UBERON:0003296!3.47e-07!8;UBERON:0010133!3.47e-07!8;UBERON:0002616!5.89e-07!49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.17e-11,73;UBERON:0001016,4.99e-11,75;UBERON:0000369,1.59e-09,5;UBERON:0002435,1.59e-09,5;UBERON:0000204,1.59e-09,5;UBERON:0010082,1.59e-09,5;UBERON:0000073,1.99e-09,54;UBERON:0001948,2.37e-09,5;UBERON:0002315,2.37e-09,5;UBERON:0004121,2.99e-08,95;UBERON:0000924,2.99e-08,95;UBERON:0006601,2.99e-08,95;UBERON:0001049,4.15e-08,52;UBERON:0005068,4.15e-08,52;UBERON:0006241,4.15e-08,52;UBERON:0007135,4.15e-08,52;UBERON:0002240,7.10e-08,6;UBERON:0005174,7.10e-08,6;UBERON:0001137,7.10e-08,6;UBERON:0002257,1.53e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340173160604279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,29.7405197463609,33.3264316941381,16.4796164911607,0,0,0,0,0,0,0,0,0,0,1.14260393761521,0.662605622854841,0,0,0,1.10115880999389,0.127687338085188,0.921639199537461,3.56092976871523,4.29991924931325,1.04182674111352,0,0.56276261003168,0.916789486660861,0,1.99320353118744,2.42319279572891,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.41889341362691,0,0,0,0,3.14560342750128,0,0,0,0,0.62336413367868,0.324482526135515,0,0,0,0,0.130120442962704,0,0,0.60281927134286,0.136072998302656,0,0,0,0.215567992932842,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321101179975584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.96134406868882,2.71653235943784,0.643011105094777,0.886701168211368,1.07021290561242,0.987294123612726,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.56369293868419,0,0,0,0,0,0.117357238645754,0,0,0,0.864090018773596,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.518936737920883,1.19707462020309,1.53660245178721,0.243106717068294,0.838452650511929,0.367687016900028,0,0.206035057238894,0,0.252697211763798,1.2673964994512,0.565879024158229,0.561849044819294,0.320125762024346,0.402048282689293,0,0.115884325944855,0,0.412085900803307,0.147198920134397,0,0.354951612318675,0.476872379894642,0.290692833264657,0.376437521661322,0.0846146078916765,0.182927972872773,0.263069711437843,0.271608227691724,0,0,0.492522411877817,0,0.619747364743864,0.385813221962283,1.74867404556562,0,0.214871054048298,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340173160604279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,29.7405197463609,33.3264316941381,16.4796164911607,0,0,0,0,0,0,0,0,0,0,1.14260393761521,0.662605622854841,0,0,0,1.10115880999389,0.127687338085188,0.921639199537461,3.56092976871523,4.29991924931325,1.04182674111352,0,0.56276261003168,0.916789486660861,0,1.99320353118744,2.42319279572891,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.41889341362691,0,0,0,0,3.14560342750128,0,0,0,0,0.62336413367868,0.324482526135515,0,0,0,0,0.130120442962704,0,0,0.60281927134286,0.136072998302656,0,0,0,0.215567992932842,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321101179975584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.96134406868882,2.71653235943784,0.643011105094777,0.886701168211368,1.07021290561242,0.987294123612726,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.56369293868419,0,0,0,0,0,0.117357238645754,0,0,0,0.864090018773596,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.518936737920883,1.19707462020309,1.53660245178721,0.243106717068294,0.838452650511929,0.367687016900028,0,0.206035057238894,0,0.252697211763798,1.2673964994512,0.565879024158229,0.561849044819294,0.320125762024346,0.402048282689293,0,0.115884325944855,0,0.412085900803307,0.147198920134397,0,0.354951612318675,0.476872379894642,0.290692833264657,0.376437521661322,0.0846146078916765,0.182927972872773,0.263069711437843,0.271608227691724,0,0,0.492522411877817,0,0.619747364743864,0.385813221962283,1.74867404556562,0,0.214871054048298,0,0,0 | ||
|short_description=p2@Sox14 | |||
}} | }} |
Latest revision as of 07:50, 27 September 2015
Short description: | p2@Sox14 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Sox14_5end |
Coexpression cluster: | MCL_coexpression_mm9:224 |
Association with transcript: | -28bp_to_NM_011440, uc012gzb.1_5end |
EntrezGene: | Sox14 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.08e-20 | 23 |
neuroblast (sensu Vertebrata) | 2.08e-20 | 23 |
granule cell | 1.28e-16 | 3 |
striatum neuron | 1.63e-15 | 3 |
neuron | 8.29e-14 | 33 |
neuronal stem cell | 8.29e-14 | 33 |
neuroblast | 8.29e-14 | 33 |
electrically signaling cell | 8.29e-14 | 33 |
electrically responsive cell | 1.82e-11 | 39 |
electrically active cell | 1.82e-11 | 39 |
neural cell | 2.88e-10 | 43 |
ectodermal cell | 5.31e-10 | 44 |
neurectodermal cell | 5.31e-10 | 44 |
neuron of the ventral spinal cord | 1.53e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 2.17e-11 | 73 |
nervous system | 4.99e-11 | 75 |
corpus striatum | 1.59e-09 | 5 |
striatum | 1.59e-09 | 5 |
ventral part of telencephalon | 1.59e-09 | 5 |
future corpus striatum | 1.59e-09 | 5 |
regional part of nervous system | 1.99e-09 | 54 |
regional part of spinal cord | 2.37e-09 | 5 |
gray matter of spinal cord | 2.37e-09 | 5 |
ectoderm-derived structure | 2.99e-08 | 95 |
ectoderm | 2.99e-08 | 95 |
presumptive ectoderm | 2.99e-08 | 95 |
neural tube | 4.15e-08 | 52 |
neural rod | 4.15e-08 | 52 |
future spinal cord | 4.15e-08 | 52 |
neural keel | 4.15e-08 | 52 |
spinal cord | 7.10e-08 | 6 |
dorsal region element | 7.10e-08 | 6 |
dorsum | 7.10e-08 | 6 |
ventral horn of spinal cord | 1.53e-07 | 3 |