FFCP PHASE1:Mm9::chr9:75531881..75531890,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=20255 | |EntrezGene=20255 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1 | |MCL_coexpression_id=1 | ||
|TSSclassifier=NA | |||
|UniProt=Q3UTT1,Q8R1D7,P47867 | |UniProt=Q3UTT1,Q8R1D7,P47867 | ||
|association_with_transcript=-18bp_to_NM_001164790,NM_009130,uc009qss.2,uc009qst.2_5end | |association_with_transcript=-18bp_to_NM_001164790,NM_009130,uc009qss.2,uc009qst.2_5end | ||
|cluster_id=chr9:75531881..75531890,- | |||
|description=CAGE_peak_3_at_Scg3_5end | |description=CAGE_peak_3_at_Scg3_5end | ||
|id=chr9:75531881..75531890,- | |id=chr9:75531881..75531890,- | ||
|ontology_enrichment_celltype=CL:0002319!1.31e-17!43;CL:0000117!5.55e-17!23;CL:0000337!5.55e-17!23;CL:0000221!6.96e-17!44;CL:0000133!6.96e-17!44;CL:0000540!9.54e-15!33;CL:0000047!9.54e-15!33;CL:0000031!9.54e-15!33;CL:0000404!9.54e-15!33;CL:0000055!3.33e-13!50;CL:0000393!8.04e-11!39;CL:0000211!8.04e-11!39 | |ontology_enrichment_celltype=CL:0002319!1.31e-17!43;CL:0000117!5.55e-17!23;CL:0000337!5.55e-17!23;CL:0000221!6.96e-17!44;CL:0000133!6.96e-17!44;CL:0000540!9.54e-15!33;CL:0000047!9.54e-15!33;CL:0000031!9.54e-15!33;CL:0000404!9.54e-15!33;CL:0000055!3.33e-13!50;CL:0000393!8.04e-11!39;CL:0000211!8.04e-11!39 | ||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.82e-28,23;CL:0000337,1.82e-28,23;CL:0002319,2.75e-21,43;CL:0000221,1.28e-20,44;CL:0000133,1.28e-20,44;CL:0000540,7.46e-18,33;CL:0000047,7.46e-18,33;CL:0000031,7.46e-18,33;CL:0000404,7.46e-18,33;CL:0000393,3.92e-14,39;CL:0000211,3.92e-14,39;CL:0002321,4.39e-10,70;CL:0002609,9.24e-07,6 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!4.39e-42!75;UBERON:0001016!4.39e-42!75;UBERON:0001017!1.73e-41!73;UBERON:0005743!1.73e-41!73;UBERON:0002346!6.15e-38!71;UBERON:0003075!6.15e-38!71;UBERON:0007284!6.15e-38!71;UBERON:0004121!2.29e-37!102;UBERON:0000924!2.29e-37!102;UBERON:0006601!2.29e-37!102;UBERON:0001049!9.05e-36!52;UBERON:0005068!9.05e-36!52;UBERON:0006241!9.05e-36!52;UBERON:0007135!9.05e-36!52;UBERON:0000955!5.01e-34!50;UBERON:0006238!5.01e-34!50;UBERON:0002616!3.05e-33!49;UBERON:0000033!9.75e-33!63;UBERON:0003056!4.74e-28!49;UBERON:0003080!5.41e-27!40;UBERON:0002020!1.72e-26!34;UBERON:0002780!4.20e-26!39;UBERON:0001890!4.20e-26!39;UBERON:0006240!4.20e-26!39;UBERON:0002791!2.48e-22!29;UBERON:0003528!2.48e-22!29;UBERON:0001893!2.48e-22!29;UBERON:0007811!5.55e-18!86;UBERON:0000956!1.56e-16!21;UBERON:0001869!1.56e-16!21;UBERON:0000203!1.56e-16!21;UBERON:0000153!1.11e-14!94;UBERON:0002619!3.29e-14!17;UBERON:0002021!9.48e-10!10;UBERON:0000411!9.48e-10!10;UBERON:0001950!9.48e-10!10;UBERON:0003076!6.93e-09!12;UBERON:0003057!6.93e-09!12;UBERON:0002420!6.20e-07!8;UBERON:0007245!6.20e-07!8;UBERON:0010009!6.20e-07!8;UBERON:0010011!6.20e-07!8;UBERON:0000454!6.20e-07!8 | |ontology_enrichment_uberon=UBERON:0000073!4.39e-42!75;UBERON:0001016!4.39e-42!75;UBERON:0001017!1.73e-41!73;UBERON:0005743!1.73e-41!73;UBERON:0002346!6.15e-38!71;UBERON:0003075!6.15e-38!71;UBERON:0007284!6.15e-38!71;UBERON:0004121!2.29e-37!102;UBERON:0000924!2.29e-37!102;UBERON:0006601!2.29e-37!102;UBERON:0001049!9.05e-36!52;UBERON:0005068!9.05e-36!52;UBERON:0006241!9.05e-36!52;UBERON:0007135!9.05e-36!52;UBERON:0000955!5.01e-34!50;UBERON:0006238!5.01e-34!50;UBERON:0002616!3.05e-33!49;UBERON:0000033!9.75e-33!63;UBERON:0003056!4.74e-28!49;UBERON:0003080!5.41e-27!40;UBERON:0002020!1.72e-26!34;UBERON:0002780!4.20e-26!39;UBERON:0001890!4.20e-26!39;UBERON:0006240!4.20e-26!39;UBERON:0002791!2.48e-22!29;UBERON:0003528!2.48e-22!29;UBERON:0001893!2.48e-22!29;UBERON:0007811!5.55e-18!86;UBERON:0000956!1.56e-16!21;UBERON:0001869!1.56e-16!21;UBERON:0000203!1.56e-16!21;UBERON:0000153!1.11e-14!94;UBERON:0002619!3.29e-14!17;UBERON:0002021!9.48e-10!10;UBERON:0000411!9.48e-10!10;UBERON:0001950!9.48e-10!10;UBERON:0003076!6.93e-09!12;UBERON:0003057!6.93e-09!12;UBERON:0002420!6.20e-07!8;UBERON:0007245!6.20e-07!8;UBERON:0010009!6.20e-07!8;UBERON:0010011!6.20e-07!8;UBERON:0000454!6.20e-07!8 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,9.33e-60,54;UBERON:0001017,1.16e-58,73;UBERON:0001016,9.86e-57,75;UBERON:0001049,2.47e-56,52;UBERON:0005068,2.47e-56,52;UBERON:0006241,2.47e-56,52;UBERON:0007135,2.47e-56,52;UBERON:0002346,1.81e-49,64;UBERON:0003075,1.81e-49,64;UBERON:0007284,1.81e-49,64;UBERON:0000955,3.14e-48,47;UBERON:0006238,3.14e-48,47;UBERON:0004121,5.07e-47,95;UBERON:0000924,5.07e-47,95;UBERON:0006601,5.07e-47,95;UBERON:0002616,6.65e-47,46;UBERON:0002020,3.92e-45,34;UBERON:0010371,8.95e-42,73;UBERON:0003080,1.18e-40,40;UBERON:0002780,3.92e-39,39;UBERON:0001890,3.92e-39,39;UBERON:0006240,3.92e-39,39;UBERON:0003528,7.71e-38,29;UBERON:0002791,7.71e-38,29;UBERON:0001893,7.71e-38,29;UBERON:0003056,4.56e-37,49;UBERON:0010314,1.78e-30,92;UBERON:0000956,1.11e-27,21;UBERON:0001869,1.11e-27,21;UBERON:0000203,1.11e-27,21;UBERON:0002619,1.29e-23,17;UBERON:0000025,6.68e-19,114;UBERON:0004111,7.44e-17,122;UBERON:0002021,7.87e-16,10;UBERON:0000411,7.87e-16,10;UBERON:0001950,7.87e-16,10;UBERON:0003076,8.18e-15,12;UBERON:0003057,8.18e-15,12;UBERON:0011216,1.83e-13,194;UBERON:0002420,6.17e-11,8;UBERON:0007245,6.17e-11,8;UBERON:0010009,6.17e-11,8;UBERON:0010011,6.17e-11,8;UBERON:0000454,6.17e-11,8;UBERON:0000483,4.21e-10,174;UBERON:0000119,7.60e-10,176;UBERON:0002240,1.07e-09,6;UBERON:0005174,1.07e-09,6;UBERON:0001137,1.07e-09,6;UBERON:0001954,3.21e-09,7;UBERON:0003022,3.21e-09,7;UBERON:0002421,3.21e-09,7;UBERON:0000349,3.21e-09,7;UBERON:0002600,3.21e-09,7;UBERON:0001948,4.11e-08,5;UBERON:0002315,4.11e-08,5;UBERON:0002950,5.72e-07,4;UBERON:0001891,5.72e-07,4;UBERON:0009616,5.72e-07,4;UBERON:0010286,5.72e-07,4;UBERON:0000369,6.07e-07,5;UBERON:0002435,6.07e-07,5;UBERON:0000204,6.07e-07,5;UBERON:0010082,6.07e-07,5;UBERON:0004733,8.73e-07,6;UBERON:0004732,8.73e-07,6;UBERON:0002028,8.73e-07,6;UBERON:0007277,8.73e-07,6 | |||
|phase1_expression=0.320297694209588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.680346321208558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.05235218932625,4.17403747195497,3.69416808241138,1.53985063787899,0,0,0,0,0,0,0,3.84401275633236,2.11596391708813,5.07065122804943,0,0,0,0,0,3.59520132622086,6.91592949578798,1.24427534770173,1.62007125998029,1.47227472945967,5.42736870367227,5.96345060569357,1.95985278743926,1.82106394934649,1.83843757322004,6.60695285996332,7.02280359468532,8.1411462625809,3.69281605644543,3.20206752608434,2.08365348222704,6.70039197603314,5.6276261003168,6.41752640662602,7.36571463684169,7.26095572075425,3.72798891650601,0.075726193333184,0.604572480854284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0.29688427812965,0,0.608930956624282,0.461230994512117,0.301445281105245,0.23517741427141,0.376999773989026,0,0,0,0,0,0,0,5.5628351432194,5.65506108396329,0,0,0,0,6.44099749440738,5.49000723382352,4.90051973240171,6.77914848749878,8.69432554923124,5.40248915854856,6.16516799657479,0.101839363850316,0,0,0.631325567659422,0,0,0.180062129805349,0.452114453507145,1.02054748726992,2.0498195245576,0.843315521037559,1.81092359517311,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.57043814830858,6.07137213037778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0701358198903186,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.9174401191699,8.32202974804643,0,0,0.315508219416257,0,0.861693590931196,0,0,0.283076530788832,0,0.292255857911312,0.790575555893047,4.17717711348349,0,0,0.162886959353576,0,0,0,0.302323556964751,0,0.295301892880773,0,0.258428293168221,0.363533729477506,0.356497378384721,0.316036757935816,0,0,3.06395645178409,0,0.258717367565509,0.643011105094777,1.95074257006501,1.96205699362278,1.48094118541909,0.913394847343798,0,0,0.220528398054962,0,0,0,0,0,0.291480836629851,7.97328798645192,0,0,0,0,0,0,0,0,0,0,0,0.203319467126849,0,0,0,0,0.165306911450672,0,0,0,0,0,0,0,0,0,0,0.13020438484395,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.34177395402186,9.20650473014354,6.30185064783336,6.35856774671644,6.16574267793578,6.0431511791176,6.75022500231806,6.75481804836331,6.34399372577886,7.7664046762773,0.31136204275253,0.798049746802062,0.341467211508268,0.486213434136588,0.419226325255965,0.367687016900028,0.666740183404846,0.618105171716683,0,0.758091635291392,0.50695859978048,0.943131706930381,0.187283014939765,0.320125762024346,0.574354689556133,0.952587382566147,0.463537303779422,0.192909220463705,0.412085900803307,0.588795680537589,2.05721551431249,0.70990322463735,0,0.436039249896986,0.376437521661322,0.423073039458382,0.365855945745545,0,0.271608227691724,0,0.593175090620871,0.689531376628944,0.818462086339379,0.309873682371932,0.964533054905707,0.499621155875892,0.233931608445408,0.214871054048298,0.191288332068843,0,0 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| ||
|short_description=p3@Scg3 | |short_description=p3@Scg3 | ||
}} | }} |
Latest revision as of 03:38, 27 September 2015
Short description: | p3@Scg3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Scg3_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | -18bp_to_NM_001164790, NM_009130, uc009qss.2, uc009qst.2_5end |
EntrezGene: | Scg3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.82e-28 | 23 |
neuroblast (sensu Vertebrata) | 1.82e-28 | 23 |
neural cell | 2.75e-21 | 43 |
ectodermal cell | 1.28e-20 | 44 |
neurectodermal cell | 1.28e-20 | 44 |
neuron | 7.46e-18 | 33 |
neuronal stem cell | 7.46e-18 | 33 |
neuroblast | 7.46e-18 | 33 |
electrically signaling cell | 7.46e-18 | 33 |
electrically responsive cell | 3.92e-14 | 39 |
electrically active cell | 3.92e-14 | 39 |
embryonic cell | 4.39e-10 | 70 |
neuron of cerebral cortex | 9.24e-07 | 6 |